RNA–Protein interactions for RNA: ENST00000548436.5

PRPF40B-208, Transcript of pre-mRNA processing factor 40 homolog B, humanhuman

TSL 2

Gene PRPF40B, Length 2,059 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40B-208ENST00000548436 MOV10Q9HCE1 1003 aaKnown RBP16.87■□□□□ 0.29
PRPF40B-208ENST00000548436 NLKQ9UBE8 527 aa16.87■□□□□ 0.29
PRPF40B-208ENST00000548436 MRTO4Q9UKD2 239 aaKnown RBP16.87■□□□□ 0.29
PRPF40B-208ENST00000548436 DUX1O43812 170 aa16.86■□□□□ 0.29
PRPF40B-208ENST00000548436 UCHL1P09936 223 aa16.86■□□□□ 0.29
PRPF40B-208ENST00000548436 TRAPPC2P0DI81 140 aa16.86■□□□□ 0.29
PRPF40B-208ENST00000548436 TRAPPC2BP0DI82 140 aa16.86■□□□□ 0.29
PRPF40B-208ENST00000548436 RBMS1P29558 406 aaKnown RBP16.86■□□□□ 0.29
PRPF40B-208ENST00000548436 SDHAP31040 664 aa16.86■□□□□ 0.29
PRPF40B-208ENST00000548436 TALDO1P37837 337 aa16.86■□□□□ 0.29
PRPF40B-208ENST00000548436 NR0B1P51843 470 aaKnown RBP16.86■□□□□ 0.29
PRPF40B-208ENST00000548436 IFITM2Q01629 132 aa16.86■□□□□ 0.29
PRPF40B-208ENST00000548436 TOMM34Q15785 309 aaPredicted RBP16.86■□□□□ 0.29
PRPF40B-208ENST00000548436 ZNF57Q68EA5 555 aaPredicted RBP16.86■□□□□ 0.29
PRPF40B-208ENST00000548436 PAMR1Q6UXH9 720 aa16.86■□□□□ 0.29
PRPF40B-208ENST00000548436 JAZF1Q86VZ6 243 aa16.86■□□□□ 0.29
PRPF40B-208ENST00000548436 SCAIQ8N9R8 606 aa16.86■□□□□ 0.29
PRPF40B-208ENST00000548436 SLC7A6Q92536 515 aa16.86■□□□□ 0.29
PRPF40B-208ENST00000548436 TAAR8Q969N4 342 aa16.86■□□□□ 0.29
PRPF40B-208ENST00000548436 DMRTB1Q96MA1 342 aa16.86■□□□□ 0.29
PRPF40B-208ENST00000548436 NPFFR2Q9Y5X5 522 aa16.86■□□□□ 0.29
PRPF40B-208ENST00000548436 ALPK2Q86TB3 2170 aa16.86■□□□□ 0.29
PRPF40B-208ENST00000548436 A0A0B4J203 849 aa16.85■□□□□ 0.29
PRPF40B-208ENST00000548436 FAM240BA0A1B0GVZ2 78 aa16.85■□□□□ 0.29
PRPF40B-208ENST00000548436 CPNE3O75131 537 aaKnown RBP16.85■□□□□ 0.29
PRPF40B-208ENST00000548436 GIMD1P0DJR0 217 aa16.85■□□□□ 0.29
PRPF40B-208ENST00000548436 ATF1P18846 271 aa16.85■□□□□ 0.29
PRPF40B-208ENST00000548436 PITPNBP48739 271 aa16.85■□□□□ 0.29
PRPF40B-208ENST00000548436 INPP1P49441 399 aa16.85■□□□□ 0.29
PRPF40B-208ENST00000548436 RPL18Q07020 188 aaKnown RBP16.85■□□□□ 0.29
PRPF40B-208ENST00000548436 CCDC58Q4VC31 144 aa16.85■□□□□ 0.29
PRPF40B-208ENST00000548436 MARCH3Q86UD3 253 aa16.85■□□□□ 0.29
PRPF40B-208ENST00000548436 GPR135Q8IZ08 494 aa16.85■□□□□ 0.29
PRPF40B-208ENST00000548436 CARFQ8N187 725 aa16.85■□□□□ 0.29
PRPF40B-208ENST00000548436 UBASH3BQ8TF42 649 aa16.85■□□□□ 0.29
PRPF40B-208ENST00000548436 RNF166Q96A37 237 aaPredicted RBP16.85■□□□□ 0.29
PRPF40B-208ENST00000548436 SLC41A2Q96JW4 573 aa16.85■□□□□ 0.29
PRPF40B-208ENST00000548436 HDHD2Q9H0R4 259 aa16.85■□□□□ 0.29
PRPF40B-208ENST00000548436 DCTN6O00399 190 aa16.85■□□□□ 0.29
PRPF40B-208ENST00000548436 HCRTR2O43614 444 aa16.85■□□□□ 0.29
PRPF40B-208ENST00000548436 TSPAN2O60636 221 aa16.85■□□□□ 0.29
PRPF40B-208ENST00000548436 FZD7O75084 574 aa16.85■□□□□ 0.29
PRPF40B-208ENST00000548436 WISP1O95388 367 aa16.85■□□□□ 0.29
PRPF40B-208ENST00000548436 CD1AP06126 327 aa16.85■□□□□ 0.29
PRPF40B-208ENST00000548436 EPXP11678 715 aa16.85■□□□□ 0.29
PRPF40B-208ENST00000548436 APEHP13798 732 aaKnown RBP16.85■□□□□ 0.29
PRPF40B-208ENST00000548436 GLB1P16278 677 aa16.85■□□□□ 0.29
PRPF40B-208ENST00000548436 IL12BP29460 328 aa16.85■□□□□ 0.29
PRPF40B-208ENST00000548436 SLC25A1P53007 311 aa16.85■□□□□ 0.29
PRPF40B-208ENST00000548436 ZNF684Q5T5D7 378 aa16.85■□□□□ 0.29
PRPF40B-208ENST00000548436 OR4D9Q8NGE8 314 aa16.85■□□□□ 0.29
PRPF40B-208ENST00000548436 CAPSLQ8WWF8 208 aa16.85■□□□□ 0.29
PRPF40B-208ENST00000548436 TRIM63Q969Q1 353 aa16.85■□□□□ 0.29
PRPF40B-208ENST00000548436 UPRTQ96BW1 309 aa16.85■□□□□ 0.29
PRPF40B-208ENST00000548436 ABHD1Q96SE0 405 aa16.85■□□□□ 0.29
PRPF40B-208ENST00000548436 THAP7Q9BT49 309 aaPredicted RBP16.85■□□□□ 0.29
PRPF40B-208ENST00000548436 ZCCHC4Q9H5U6 513 aa16.85■□□□□ 0.29
PRPF40B-208ENST00000548436 RXFP3Q9NSD7 469 aa16.85■□□□□ 0.29
PRPF40B-208ENST00000548436 SEMA5BQ9P283 1151 aa16.85■□□□□ 0.29
PRPF40B-208ENST00000548436 SLC6A5Q9Y345 797 aa16.85■□□□□ 0.29
PRPF40B-208ENST00000548436 NOTOA8MTQ0 251 aa16.84■□□□□ 0.29
PRPF40B-208ENST00000548436 SNRPBP14678 240 aaKnown RBP16.84■□□□□ 0.29
PRPF40B-208ENST00000548436 NANOS3P60323 173 aaKnown RBP16.84■□□□□ 0.29
PRPF40B-208ENST00000548436 DCAF7P61962 342 aa16.84■□□□□ 0.29
PRPF40B-208ENST00000548436 HSF2Q03933 536 aa16.84■□□□□ 0.29
PRPF40B-208ENST00000548436 SF3B4Q15427 424 aaKnown RBP eCLIP16.84■□□□□ 0.291e-8■■■■■ 43.8
PRPF40B-208ENST00000548436 TATDN3Q17R31 274 aa16.84■□□□□ 0.29
PRPF40B-208ENST00000548436 ARHGAP40Q5TG30 622 aa16.84■□□□□ 0.29
PRPF40B-208ENST00000548436 UNQ9370/PRO34162Q6UXP9 181 aa16.84■□□□□ 0.29
PRPF40B-208ENST00000548436 SIX5Q8N196 739 aa16.84■□□□□ 0.29
PRPF40B-208ENST00000548436 RPS4Y2Q8TD47 263 aa16.84■□□□□ 0.29
PRPF40B-208ENST00000548436 DNASE2BQ8WZ79 361 aa16.84■□□□□ 0.29
PRPF40B-208ENST00000548436 DNAJA3Q96EY1 480 aa16.84■□□□□ 0.29
PRPF40B-208ENST00000548436 TSPAN32Q96QS1 320 aa16.84■□□□□ 0.29
PRPF40B-208ENST00000548436 DPYSL5Q9BPU6 564 aa16.84■□□□□ 0.29
PRPF40B-208ENST00000548436 VN1R1Q9GZP7 353 aa16.84■□□□□ 0.29
PRPF40B-208ENST00000548436 WWTR1Q9GZV5 400 aa16.84■□□□□ 0.29
PRPF40B-208ENST00000548436 DDX28Q9NUL7 540 aaKnown RBP16.84■□□□□ 0.29
PRPF40B-208ENST00000548436 H7C1C5 153 aa16.84■□□□□ 0.29
PRPF40B-208ENST00000548436 BCAT2O15382 392 aaPredicted RBP16.84■□□□□ 0.29
PRPF40B-208ENST00000548436 FLRT2O43155 660 aa16.84■□□□□ 0.29
PRPF40B-208ENST00000548436 GATBO75879 557 aaKnown RBP16.84■□□□□ 0.29
PRPF40B-208ENST00000548436 ARL6IP5O75915 188 aa16.84■□□□□ 0.29
PRPF40B-208ENST00000548436 TXNDC12O95881 172 aa16.84■□□□□ 0.29
PRPF40B-208ENST00000548436 AFF3P51826 1226 aaKnown RBP16.84■□□□□ 0.29
PRPF40B-208ENST00000548436 AGFG1P52594 562 aaKnown RBP16.84■□□□□ 0.29
PRPF40B-208ENST00000548436 CLDN20P56880 219 aa16.84■□□□□ 0.29
PRPF40B-208ENST00000548436 FOXL2P58012 376 aa16.84■□□□□ 0.29
PRPF40B-208ENST00000548436 LCN6P62502 163 aa16.84■□□□□ 0.29
PRPF40B-208ENST00000548436 MESTQ5EB52 335 aa16.84■□□□□ 0.29
PRPF40B-208ENST00000548436 HLA-DQA1Q5Y7H0 255 aa16.84■□□□□ 0.29
PRPF40B-208ENST00000548436 POMZP3Q6PJE2 187 aa16.84■□□□□ 0.29
PRPF40B-208ENST00000548436 SPEM1Q8N4L4 309 aa16.84■□□□□ 0.29
PRPF40B-208ENST00000548436 DAZLQ92904 295 aaKnown RBP16.84■□□□□ 0.29
PRPF40B-208ENST00000548436 ORAI1Q96D31 301 aa16.84■□□□□ 0.29
PRPF40B-208ENST00000548436 ELF4Q99607 663 aaPredicted RBP16.84■□□□□ 0.29
PRPF40B-208ENST00000548436 TP63Q9H3D4 680 aaPredicted RBP16.84■□□□□ 0.29
PRPF40B-208ENST00000548436 C12orf10Q9HB07 376 aa16.84■□□□□ 0.29
PRPF40B-208ENST00000548436 SRA1Q9HD15 236 aaKnown RBP16.84■□□□□ 0.29
PRPF40B-208ENST00000548436 RANGRFQ9HD47 186 aaPredicted RBP16.84■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 38.6 ms