RNA–Protein interactions for RNA: ENST00000544301.6

VIM-209, Transcript of vimentin, humanhuman

APPRIS P1 TSL 1 (best)

Gene VIM, Length 2,135 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-209ENST00000544301 TSSK2Q96PF2 358 aa16.41■□□□□ 0.22
VIM-209ENST00000544301 GAL3ST4Q96RP7 486 aa16.41■□□□□ 0.22
VIM-209ENST00000544301 LPAR4Q99677 370 aa16.41■□□□□ 0.22
VIM-209ENST00000544301 NUDT9Q9BW91 350 aa16.41■□□□□ 0.22
VIM-209ENST00000544301 LAT2Q9GZY6 243 aa16.41■□□□□ 0.22
VIM-209ENST00000544301 ABRACLQ9P1F3 81 aa16.41■□□□□ 0.22
VIM-209ENST00000544301 ZNF346Q9UL40 294 aaKnown RBP16.41■□□□□ 0.22
VIM-209ENST00000544301 IGHV1OR21-1A0A087WYE8 117 aa16.4■□□□□ 0.22
VIM-209ENST00000544301 A0A0B4J203 849 aa16.4■□□□□ 0.22
VIM-209ENST00000544301 IDSB3KWA1 339 aa16.4■□□□□ 0.22
VIM-209ENST00000544301 EEF1E1O43324 174 aaKnown RBP16.4■□□□□ 0.22
VIM-209ENST00000544301 GPRIN2O60269 458 aa16.4■□□□□ 0.22
VIM-209ENST00000544301 CPNE3O75131 537 aaKnown RBP16.4■□□□□ 0.22
VIM-209ENST00000544301 PIAS2O75928 621 aa16.4■□□□□ 0.22
VIM-209ENST00000544301 F13BP05160 661 aa16.4■□□□□ 0.22
VIM-209ENST00000544301 AHCYP23526 432 aa16.4■□□□□ 0.22
VIM-209ENST00000544301 TACR3P29371 465 aa16.4■□□□□ 0.22
VIM-209ENST00000544301 SDHAP31040 664 aa16.4■□□□□ 0.22
VIM-209ENST00000544301 CSNK1EP49674 416 aaKnown RBP16.4■□□□□ 0.22
VIM-209ENST00000544301 CFHR1Q03591 330 aa16.4■□□□□ 0.22
VIM-209ENST00000544301 ELAVL1Q15717 326 aaKnown RBP16.4■□□□□ 0.22
VIM-209ENST00000544301 ZNF684Q5T5D7 378 aa16.4■□□□□ 0.22
VIM-209ENST00000544301 ZNF511Q8NB15 262 aa16.4■□□□□ 0.22
VIM-209ENST00000544301 OR4D9Q8NGE8 314 aa16.4■□□□□ 0.22
VIM-209ENST00000544301 ZNF563Q8TA94 476 aa16.4■□□□□ 0.22
VIM-209ENST00000544301 NRSN2Q9GZP1 204 aa16.4■□□□□ 0.22
VIM-209ENST00000544301 ADAM19Q9H013 955 aa16.4■□□□□ 0.22
VIM-209ENST00000544301 TMEM165Q9HC07 324 aa16.4■□□□□ 0.22
VIM-209ENST00000544301 RXFP3Q9NSD7 469 aa16.4■□□□□ 0.22
VIM-209ENST00000544301 TCRBV16S1A1N1A0A5B0 115 aa16.4■□□□□ 0.22
VIM-209ENST00000544301 PSMD9O00233 223 aa16.4■□□□□ 0.22
VIM-209ENST00000544301 ORC5O43913 435 aa16.4■□□□□ 0.22
VIM-209ENST00000544301 TXNDC12O95881 172 aa16.4■□□□□ 0.22
VIM-209ENST00000544301 SLC6A1P30531 599 aa16.4■□□□□ 0.22
VIM-209ENST00000544301 MRPS15P82914 257 aaKnown RBP16.4■□□□□ 0.22
VIM-209ENST00000544301 ZNF117Q03924 483 aa16.4■□□□□ 0.22
VIM-209ENST00000544301 HSD17B12Q53GQ0 312 aa16.4■□□□□ 0.22
VIM-209ENST00000544301 SNAP47Q5SQN1 464 aa16.4■□□□□ 0.22
VIM-209ENST00000544301 SLC7A5P1Q8MH63 180 aa16.4■□□□□ 0.22
VIM-209ENST00000544301 RNF166Q96A37 237 aaPredicted RBP16.4■□□□□ 0.22
VIM-209ENST00000544301 FOXQ1Q9C009 403 aa16.4■□□□□ 0.22
VIM-209ENST00000544301 AK6Q9Y3D8 172 aaKnown RBP16.4■□□□□ 0.22
VIM-209ENST00000544301 EML5Q05BV3 1969 aa16.4■□□□□ 0.22
VIM-209ENST00000544301 ZP2Q05996 745 aa16.39■□□□□ 0.21
VIM-209ENST00000544301 RPL18Q07020 188 aaKnown RBP16.39■□□□□ 0.21
VIM-209ENST00000544301 EBPQ15125 230 aaKnown RBP16.39■□□□□ 0.21
VIM-209ENST00000544301 SLC16A9Q7RTY1 509 aa16.39■□□□□ 0.21
VIM-209ENST00000544301 NOXA1Q86UR1 476 aa16.39■□□□□ 0.21
VIM-209ENST00000544301 C9orf40Q8IXQ3 194 aa16.39■□□□□ 0.21
VIM-209ENST00000544301 TAAR8Q969N4 342 aa16.39■□□□□ 0.21
VIM-209ENST00000544301 CREB3L1Q96BA8 519 aa16.39■□□□□ 0.21
VIM-209ENST00000544301 C12orf10Q9HB07 376 aa16.39■□□□□ 0.21
VIM-209ENST00000544301 BRD7Q9NPI1 651 aa16.39■□□□□ 0.21
VIM-209ENST00000544301 CLEC4AQ9UMR7 237 aa16.39■□□□□ 0.21
VIM-209ENST00000544301 MOKQ9UQ07 419 aa16.39■□□□□ 0.21
VIM-209ENST00000544301 CDC14CA4D256 554 aa16.39■□□□□ 0.21
VIM-209ENST00000544301 FAM172BPA6NC97 362 aa16.39■□□□□ 0.21
VIM-209ENST00000544301 GMFGO60234 142 aa16.39■□□□□ 0.21
VIM-209ENST00000544301 TRIM3O75382 744 aaPredicted RBP16.39■□□□□ 0.21
VIM-209ENST00000544301 FOLR1P15328 257 aa16.39■□□□□ 0.21
VIM-209ENST00000544301 SLC6A8P48029 635 aa16.39■□□□□ 0.21
VIM-209ENST00000544301 NANOS3P60323 173 aaKnown RBP16.39■□□□□ 0.21
VIM-209ENST00000544301 DCAF7P61962 342 aa16.39■□□□□ 0.21
VIM-209ENST00000544301 VWA2Q5GFL6 755 aa16.39■□□□□ 0.21
VIM-209ENST00000544301 CARFQ8N187 725 aa16.39■□□□□ 0.21
VIM-209ENST00000544301 PHYHIPQ92561 330 aa16.39■□□□□ 0.21
VIM-209ENST00000544301 ABCG5Q9H222 651 aa16.39■□□□□ 0.21
VIM-209ENST00000544301 UBE2ZQ9H832 354 aaPredicted RBP16.39■□□□□ 0.21
VIM-209ENST00000544301 NOX4Q9NPH5 578 aa16.39■□□□□ 0.21
VIM-209ENST00000544301 ZNF879B4DU55 563 aa16.38■□□□□ 0.21
VIM-209ENST00000544301 INMT-MINDY4F8WBC2 141 aa16.38■□□□□ 0.21
VIM-209ENST00000544301 PIN1P1O15428 100 aa16.38■□□□□ 0.21
VIM-209ENST00000544301 FBLP22087 321 aaKnown RBP16.38■□□□□ 0.21
VIM-209ENST00000544301 IL12BP29460 328 aa16.38■□□□□ 0.21
VIM-209ENST00000544301 LCN1P31025 176 aa16.38■□□□□ 0.21
VIM-209ENST00000544301 PLA1AQ53H76 456 aa16.38■□□□□ 0.21
VIM-209ENST00000544301 HACD4Q5VWC8 232 aa16.38■□□□□ 0.21
VIM-209ENST00000544301 NUP54Q7Z3B4 507 aa16.38■□□□□ 0.21
VIM-209ENST00000544301 NANOGNBQ7Z5D8 188 aa16.38■□□□□ 0.21
VIM-209ENST00000544301 PLXDC1Q8IUK5 500 aa16.38■□□□□ 0.21
VIM-209ENST00000544301 SLC35F3Q8IY50 421 aa16.38■□□□□ 0.21
VIM-209ENST00000544301 TCTE3Q8IZS6 198 aa16.38■□□□□ 0.21
VIM-209ENST00000544301 ABCA7Q8IZY2 2146 aa16.38■□□□□ 0.21
VIM-209ENST00000544301 D2HGDHQ8N465 521 aa16.38■□□□□ 0.21
VIM-209ENST00000544301 HAVCR2Q8TDQ0 301 aa16.38■□□□□ 0.21
VIM-209ENST00000544301 TSPAN32Q96QS1 320 aa16.38■□□□□ 0.21
VIM-209ENST00000544301 ZNF304Q9HCX3 659 aa16.38■□□□□ 0.21
VIM-209ENST00000544301 GRHPRQ9UBQ7 328 aa16.38■□□□□ 0.21
VIM-209ENST00000544301 ZNF281Q9Y2X9 895 aa16.38■□□□□ 0.21
VIM-209ENST00000544301 SPAG17Q6Q759 2223 aa16.38■□□□□ 0.21
VIM-209ENST00000544301 C17orf51A8MQB3 221 aa16.37■□□□□ 0.21
VIM-209ENST00000544301 DCTN6O00399 190 aa16.37■□□□□ 0.21
VIM-209ENST00000544301 HCRTR2O43614 444 aa16.37■□□□□ 0.21
VIM-209ENST00000544301 NUDT21O43809 227 aaKnown RBP16.37■□□□□ 0.21
VIM-209ENST00000544301 TSPAN2O60636 221 aa16.37■□□□□ 0.21
VIM-209ENST00000544301 ARSBP15848 533 aa16.37■□□□□ 0.21
VIM-209ENST00000544301 SRMP19623 302 aa16.37■□□□□ 0.21
VIM-209ENST00000544301 NR0B1P51843 470 aaKnown RBP16.37■□□□□ 0.21
VIM-209ENST00000544301 CDK10Q15131 360 aa16.37■□□□□ 0.21
VIM-209ENST00000544301 NSDHLQ15738 373 aa16.37■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 28.3 ms