RNA–Protein interactions for RNA: ENST00000543552.5

RTN3-213, Transcript of reticulon 3, humanhuman

TSL 4

Gene RTN3, Length 529 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-213ENST00000543552 LRIF1Q5T3J3 769 aa11.46□□□□□ -0.57
RTN3-213ENST00000543552 FAM69AQ5T7M9 428 aa11.46□□□□□ -0.57
RTN3-213ENST00000543552 AGBL2Q5U5Z8 902 aa11.46□□□□□ -0.57
RTN3-213ENST00000543552 FAM91A1Q658Y4 838 aa11.46□□□□□ -0.57
RTN3-213ENST00000543552 REEP3Q6NUK4 255 aa11.46□□□□□ -0.57
RTN3-213ENST00000543552 ANKRD16Q6P6B7 361 aa11.46□□□□□ -0.57
RTN3-213ENST00000543552 PODNL1Q6PEZ8 512 aa11.46□□□□□ -0.57
RTN3-213ENST00000543552 BLOC1S3Q6QNY0 202 aa11.46□□□□□ -0.57
RTN3-213ENST00000543552 NET1Q7Z628 596 aaPredicted RBP11.46□□□□□ -0.57
RTN3-213ENST00000543552 EPHX4Q8IUS5 362 aa11.46□□□□□ -0.57
RTN3-213ENST00000543552 GPR137CQ8N3F9 429 aa11.46□□□□□ -0.57
RTN3-213ENST00000543552 ZNF525Q8N782 197 aa11.46□□□□□ -0.57
RTN3-213ENST00000543552 FAM169BQ8N8A8 192 aa11.46□□□□□ -0.57
RTN3-213ENST00000543552 LSMEM1Q8N8F7 131 aa11.46□□□□□ -0.57
RTN3-213ENST00000543552 PROX1Q92786 737 aa11.46□□□□□ -0.57
RTN3-213ENST00000543552 SPDL1Q96EA4 605 aa11.46□□□□□ -0.57
RTN3-213ENST00000543552 TNFRSF13CQ96RJ3 184 aa11.46□□□□□ -0.57
RTN3-213ENST00000543552 ZNF607Q96SK3 696 aa11.46□□□□□ -0.57
RTN3-213ENST00000543552 CCDC28BQ9BUN5 200 aa11.46□□□□□ -0.57
RTN3-213ENST00000543552 EVA1AQ9H8M9 152 aa11.46□□□□□ -0.57
RTN3-213ENST00000543552 TESQ9UGI8 421 aaKnown RBP11.46□□□□□ -0.57
RTN3-213ENST00000543552 CDC42EP3Q9UKI2 254 aa11.46□□□□□ -0.57
RTN3-213ENST00000543552 CHST2Q9Y4C5 530 aa11.46□□□□□ -0.57
RTN3-213ENST00000543552 HEATR1Q9H583 2144 aaKnown RBP11.45□□□□□ -0.58
RTN3-213ENST00000543552 ANK3Q12955 4377 aaKnown RBP11.45□□□□□ -0.58
RTN3-213ENST00000543552 TRAV36DV7A0A075B6V5 113 aa11.45□□□□□ -0.58
RTN3-213ENST00000543552 IGHV1-18A0A0C4DH31 117 aa11.45□□□□□ -0.58
RTN3-213ENST00000543552 NDUFS8O00217 210 aa11.45□□□□□ -0.58
RTN3-213ENST00000543552 SERPINB7O75635 380 aa11.45□□□□□ -0.58
RTN3-213ENST00000543552 PDE5AO76074 875 aa11.45□□□□□ -0.58
RTN3-213ENST00000543552 F12P00748 615 aaPredicted RBP11.45□□□□□ -0.58
RTN3-213ENST00000543552 NUDT7P0C024 238 aa11.45□□□□□ -0.58
RTN3-213ENST00000543552 SLC6A2P23975 617 aa11.45□□□□□ -0.58
RTN3-213ENST00000543552 CLDN17P56750 224 aa11.45□□□□□ -0.58
RTN3-213ENST00000543552 VLDLRP98155 873 aa11.45□□□□□ -0.58
RTN3-213ENST00000543552 CDK6Q00534 326 aa11.45□□□□□ -0.58
RTN3-213ENST00000543552 IL1RL1Q01638 556 aa11.45□□□□□ -0.58
RTN3-213ENST00000543552 ROR2Q01974 943 aaKnown RBP11.45□□□□□ -0.58
RTN3-213ENST00000543552 TMEM249Q2WGJ8 235 aa11.45□□□□□ -0.58
RTN3-213ENST00000543552 CHRFAM7AQ494W8 412 aa11.45□□□□□ -0.58
RTN3-213ENST00000543552 ALG10BQ5I7T1 473 aa11.45□□□□□ -0.58
RTN3-213ENST00000543552 C6orf52Q5T4I8 152 aa11.45□□□□□ -0.58
RTN3-213ENST00000543552 ULK3Q6PHR2 472 aa11.45□□□□□ -0.58
RTN3-213ENST00000543552 DHRS4L2Q6PKH6 230 aa11.45□□□□□ -0.58
RTN3-213ENST00000543552 SLC46A3Q7Z3Q1 461 aa11.45□□□□□ -0.58
RTN3-213ENST00000543552 HIPK1Q86Z02 1210 aa11.45□□□□□ -0.58
RTN3-213ENST00000543552 CCDC36Q8IYA8 594 aa11.45□□□□□ -0.58
RTN3-213ENST00000543552 ADPRHL1Q8NDY3 354 aa11.45□□□□□ -0.58
RTN3-213ENST00000543552 PIK3C3Q8NEB9 887 aa11.45□□□□□ -0.58
RTN3-213ENST00000543552 OR4F15Q8NGB8 312 aa11.45□□□□□ -0.58
RTN3-213ENST00000543552 NFKBIDQ8NI38 313 aa11.45□□□□□ -0.58
RTN3-213ENST00000543552 DYDC1Q8WWB3 177 aa11.45□□□□□ -0.58
RTN3-213ENST00000543552 BCL2L2Q92843 193 aaPredicted RBP11.45□□□□□ -0.58
RTN3-213ENST00000543552 FBXO17Q96EF6 278 aa11.45□□□□□ -0.58
RTN3-213ENST00000543552 KTI12Q96EK9 354 aaPredicted RBP11.45□□□□□ -0.58
RTN3-213ENST00000543552 SLC47A1Q96FL8 570 aa11.45□□□□□ -0.58
RTN3-213ENST00000543552 OXGR1Q96P68 337 aa11.45□□□□□ -0.58
RTN3-213ENST00000543552 EPYCQ99645 322 aa11.45□□□□□ -0.58
RTN3-213ENST00000543552 PTDSS2Q9BVG9 487 aa11.45□□□□□ -0.58
RTN3-213ENST00000543552 RABEP2Q9H5N1 569 aa11.45□□□□□ -0.58
RTN3-213ENST00000543552 MYOZ1Q9NP98 299 aaPredicted RBP11.45□□□□□ -0.58
RTN3-213ENST00000543552 CCDC167Q9P0B6 97 aa11.45□□□□□ -0.58
RTN3-213ENST00000543552 ADAM21Q9UKJ8 722 aa11.45□□□□□ -0.58
RTN3-213ENST00000543552 CORINQ9Y5Q5 1042 aa11.45□□□□□ -0.58
RTN3-213ENST00000543552 GMEB1Q9Y692 573 aa11.45□□□□□ -0.58
RTN3-213ENST00000543552 LOC102725191A0A1B0GVB3 256 aa11.44□□□□□ -0.58
RTN3-213ENST00000543552 A0A1B0GWA3 101 aa11.44□□□□□ -0.58
RTN3-213ENST00000543552 RPL36A-HNRNPH2H7BZ11 118 aa11.44□□□□□ -0.58
RTN3-213ENST00000543552 FZD7O75084 574 aa11.44□□□□□ -0.58
RTN3-213ENST00000543552 ERCC1P07992 297 aaPredicted RBP11.44□□□□□ -0.58
RTN3-213ENST00000543552 VIMP08670 466 aaKnown RBP11.44□□□□□ -0.58
RTN3-213ENST00000543552 NQO1P15559 274 aaKnown RBP11.44□□□□□ -0.58
RTN3-213ENST00000543552 HOXB9P17482 250 aaPredicted RBP11.44□□□□□ -0.58
RTN3-213ENST00000543552 SERPINF1P36955 418 aa11.44□□□□□ -0.58
RTN3-213ENST00000543552 IDH3AP50213 366 aa11.44□□□□□ -0.58
RTN3-213ENST00000543552 PDLIM4P50479 330 aa11.44□□□□□ -0.58
RTN3-213ENST00000543552 ATP4BP51164 291 aa11.44□□□□□ -0.58
RTN3-213ENST00000543552 RGS8P57771 180 aaPredicted RBP11.44□□□□□ -0.58
RTN3-213ENST00000543552 HOXC5Q00444 222 aa11.44□□□□□ -0.58
RTN3-213ENST00000543552 EGR4Q05215 589 aa11.44□□□□□ -0.58
RTN3-213ENST00000543552 SWT1Q5T5J6 900 aaKnown RBP11.44□□□□□ -0.58
RTN3-213ENST00000543552 H1FNTQ75WM6 255 aaPredicted RBP11.44□□□□□ -0.58
RTN3-213ENST00000543552 CXXC5Q7LFL8 322 aaKnown RBP11.44□□□□□ -0.58
RTN3-213ENST00000543552 RANBP3LQ86VV4 465 aaPredicted RBP11.44□□□□□ -0.58
RTN3-213ENST00000543552 SNX32Q86XE0 403 aa11.44□□□□□ -0.58
RTN3-213ENST00000543552 SPATA3Q8NHX4 192 aa11.44□□□□□ -0.58
RTN3-213ENST00000543552 C10orf105Q8TEF2 133 aa11.44□□□□□ -0.58
RTN3-213ENST00000543552 MDFIQ99750 246 aa11.44□□□□□ -0.58
RTN3-213ENST00000543552 PIMREGQ9BSJ6 248 aa11.44□□□□□ -0.58
RTN3-213ENST00000543552 TMEM38AQ9H6F2 299 aa11.44□□□□□ -0.58
RTN3-213ENST00000543552 TMEM27Q9HBJ8 222 aa11.44□□□□□ -0.58
RTN3-213ENST00000543552 CA10Q9NS85 328 aa11.44□□□□□ -0.58
RTN3-213ENST00000543552 SLC25A37Q9NYZ2 338 aa11.44□□□□□ -0.58
RTN3-213ENST00000543552 CRNNQ9UBG3 495 aaPredicted RBP11.44□□□□□ -0.58
RTN3-213ENST00000543552 NIPSNAP3AQ9UFN0 247 aaPredicted RBP11.44□□□□□ -0.58
RTN3-213ENST00000543552 A0A096LNT2 108 aa11.43□□□□□ -0.58
RTN3-213ENST00000543552 B9A039 149 aa11.43□□□□□ -0.58
RTN3-213ENST00000543552 M0R082 166 aa11.43□□□□□ -0.58
RTN3-213ENST00000543552 UPK3AO75631 287 aa11.43□□□□□ -0.58
RTN3-213ENST00000543552 ZNF432O94892 652 aa11.43□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 170.2 ms