RNA–Protein interactions for RNA: ENST00000531727.5

CPSF1-207, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 3 BASIC

Gene CPSF1, Length 704 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-207ENST00000531727 HMBOX1Q6NT76 420 aa14.66□□□□□ -0.06
CPSF1-207ENST00000531727 ANKRD16Q6P6B7 361 aa14.66□□□□□ -0.06
CPSF1-207ENST00000531727 BLOC1S3Q6QNY0 202 aa14.66□□□□□ -0.06
CPSF1-207ENST00000531727 C5orf46Q6UWT4 87 aa14.66□□□□□ -0.06
CPSF1-207ENST00000531727 MSRB3Q8IXL7 192 aa14.66□□□□□ -0.06
CPSF1-207ENST00000531727 LSMEM1Q8N8F7 131 aa14.66□□□□□ -0.06
CPSF1-207ENST00000531727 SPATA3Q8NHX4 192 aa14.66□□□□□ -0.06
CPSF1-207ENST00000531727 NFKBIDQ8NI38 313 aa14.66□□□□□ -0.06
CPSF1-207ENST00000531727 C10orf105Q8TEF2 133 aa14.66□□□□□ -0.06
CPSF1-207ENST00000531727 NANOS1Q8WY41 292 aaKnown RBP14.66□□□□□ -0.06
CPSF1-207ENST00000531727 PROX1Q92786 737 aa14.66□□□□□ -0.06
CPSF1-207ENST00000531727 FBXO17Q96EF6 278 aa14.66□□□□□ -0.06
CPSF1-207ENST00000531727 RSPO3Q9BXY4 272 aaPredicted RBP14.66□□□□□ -0.06
CPSF1-207ENST00000531727 CRNNQ9UBG3 495 aaPredicted RBP14.66□□□□□ -0.06
CPSF1-207ENST00000531727 SEC14L4Q9UDX3 406 aa14.66□□□□□ -0.06
CPSF1-207ENST00000531727 RCE1Q9Y256 329 aa14.66□□□□□ -0.06
CPSF1-207ENST00000531727 RPL36A-HNRNPH2H7BZ11 118 aa14.65□□□□□ -0.06
CPSF1-207ENST00000531727 NR5A2O00482 541 aa14.65□□□□□ -0.06
CPSF1-207ENST00000531727 OR2T1O43869 369 aa14.65□□□□□ -0.06
CPSF1-207ENST00000531727 ZNF432O94892 652 aa14.65□□□□□ -0.06
CPSF1-207ENST00000531727 F12P00748 615 aaPredicted RBP14.65□□□□□ -0.06
CPSF1-207ENST00000531727 IFNA2P01563 188 aa14.65□□□□□ -0.06
CPSF1-207ENST00000531727 CRYAAP02489 173 aa14.65□□□□□ -0.06
CPSF1-207ENST00000531727 HOXB1P14653 301 aaPredicted RBP14.65□□□□□ -0.06
CPSF1-207ENST00000531727 PPIBP23284 216 aaKnown RBP14.65□□□□□ -0.06
CPSF1-207ENST00000531727 ROR2Q01974 943 aaKnown RBP14.65□□□□□ -0.06
CPSF1-207ENST00000531727 CHRFAM7AQ494W8 412 aa14.65□□□□□ -0.06
CPSF1-207ENST00000531727 GCNT6Q5T4J0 391 aa14.65□□□□□ -0.06
CPSF1-207ENST00000531727 FAM69AQ5T7M9 428 aa14.65□□□□□ -0.06
CPSF1-207ENST00000531727 AGBL2Q5U5Z8 902 aa14.65□□□□□ -0.06
CPSF1-207ENST00000531727 PODNL1Q6PEZ8 512 aa14.65□□□□□ -0.06
CPSF1-207ENST00000531727 DHRS4L2Q6PKH6 230 aa14.65□□□□□ -0.06
CPSF1-207ENST00000531727 KRT73Q86Y46 540 aa14.65□□□□□ -0.06
CPSF1-207ENST00000531727 ANKK1Q8NFD2 765 aa14.65□□□□□ -0.06
CPSF1-207ENST00000531727 SLC38A4Q969I6 547 aa14.65□□□□□ -0.06
CPSF1-207ENST00000531727 SPDL1Q96EA4 605 aa14.65□□□□□ -0.06
CPSF1-207ENST00000531727 OXGR1Q96P68 337 aa14.65□□□□□ -0.06
CPSF1-207ENST00000531727 SPATA5L1Q9BVQ7 753 aa14.65□□□□□ -0.06
CPSF1-207ENST00000531727 NELFAQ9H3P2 528 aa14.65□□□□□ -0.06
CPSF1-207ENST00000531727 MOV10Q9HCE1 1003 aaKnown RBP14.65□□□□□ -0.06
CPSF1-207ENST00000531727 CA10Q9NS85 328 aa14.65□□□□□ -0.06
CPSF1-207ENST00000531727 SLAMF8Q9P0V8 285 aa14.65□□□□□ -0.06
CPSF1-207ENST00000531727 B3GAT1Q9P2W7 334 aa14.65□□□□□ -0.06
CPSF1-207ENST00000531727 FKBP7Q9Y680 259 aa14.65□□□□□ -0.06
CPSF1-207ENST00000531727 YLPM1P49750 1951 aaKnown RBP14.64□□□□□ -0.07
CPSF1-207ENST00000531727 A0A096LPE4 126 aa14.64□□□□□ -0.07
CPSF1-207ENST00000531727 A0A1B0GWA3 101 aa14.64□□□□□ -0.07
CPSF1-207ENST00000531727 A0A1W2PPZ6 126 aa14.64□□□□□ -0.07
CPSF1-207ENST00000531727 M0R082 166 aa14.64□□□□□ -0.07
CPSF1-207ENST00000531727 AIM2O14862 343 aa14.64□□□□□ -0.07
CPSF1-207ENST00000531727 SLC43A1O75387 559 aa14.64□□□□□ -0.07
CPSF1-207ENST00000531727 LY6HO94772 140 aa14.64□□□□□ -0.07
CPSF1-207ENST00000531727 IGLV1-44P01699 117 aa14.64□□□□□ -0.07
CPSF1-207ENST00000531727 CECR9P0C854 216 aa14.64□□□□□ -0.07
CPSF1-207ENST00000531727 HTR2AP28223 471 aa14.64□□□□□ -0.07
CPSF1-207ENST00000531727 IDH3AP50213 366 aa14.64□□□□□ -0.07
CPSF1-207ENST00000531727 SNRPD2P62316 118 aaKnown RBP14.64□□□□□ -0.07
CPSF1-207ENST00000531727 TUBA1BP68363 451 aa14.64□□□□□ -0.07
CPSF1-207ENST00000531727 TUBA4AP68366 448 aa14.64□□□□□ -0.07
CPSF1-207ENST00000531727 NAAAQ02083 359 aa14.64□□□□□ -0.07
CPSF1-207ENST00000531727 PAGE3Q5JUK9 113 aa14.64□□□□□ -0.07
CPSF1-207ENST00000531727 REEP3Q6NUK4 255 aa14.64□□□□□ -0.07
CPSF1-207ENST00000531727 TUBA1AQ71U36 451 aa14.64□□□□□ -0.07
CPSF1-207ENST00000531727 COMTD1Q86VU5 262 aa14.64□□□□□ -0.07
CPSF1-207ENST00000531727 C10orf111Q8N326 155 aa14.64□□□□□ -0.07
CPSF1-207ENST00000531727 FAM169BQ8N8A8 192 aa14.64□□□□□ -0.07
CPSF1-207ENST00000531727 ZNF417Q8TAU3 575 aa14.64□□□□□ -0.07
CPSF1-207ENST00000531727 DNAJA4Q8WW22 397 aaPredicted RBP14.64□□□□□ -0.07
CPSF1-207ENST00000531727 TAAR8Q969N4 342 aa14.64□□□□□ -0.07
CPSF1-207ENST00000531727 SORCS2Q96PQ0 1159 aa14.64□□□□□ -0.07
CPSF1-207ENST00000531727 ZNF587Q96SQ5 575 aaPredicted RBP14.64□□□□□ -0.07
CPSF1-207ENST00000531727 EBF4Q9BQW3 602 aa14.64□□□□□ -0.07
CPSF1-207ENST00000531727 CCDC28BQ9BUN5 200 aa14.64□□□□□ -0.07
CPSF1-207ENST00000531727 SLCO1B3Q9NPD5 702 aa14.64□□□□□ -0.07
CPSF1-207ENST00000531727 SLC52A3Q9NQ40 469 aa14.64□□□□□ -0.07
CPSF1-207ENST00000531727 CCDC167Q9P0B6 97 aa14.64□□□□□ -0.07
CPSF1-207ENST00000531727 VAPAQ9P0L0 249 aa14.64□□□□□ -0.07
CPSF1-207ENST00000531727 GMEB1Q9Y692 573 aa14.64□□□□□ -0.07
CPSF1-207ENST00000531727 SONP18583 2426 aaKnown RBP14.63□□□□□ -0.07
CPSF1-207ENST00000531727 IGKV1D-42A0A075B6H8 117 aa14.63□□□□□ -0.07
CPSF1-207ENST00000531727 TRAV36DV7A0A075B6V5 113 aa14.63□□□□□ -0.07
CPSF1-207ENST00000531727 TRBV5-3A0A0A0MS03 114 aa14.63□□□□□ -0.07
CPSF1-207ENST00000531727 PDE5AO76074 875 aa14.63□□□□□ -0.07
CPSF1-207ENST00000531727 IGKV3-15P01624 115 aa14.63□□□□□ -0.07
CPSF1-207ENST00000531727 USF1P22415 310 aaPredicted RBP14.63□□□□□ -0.07
CPSF1-207ENST00000531727 GRPRP30550 384 aa14.63□□□□□ -0.07
CPSF1-207ENST00000531727 SERPINF1P36955 418 aa14.63□□□□□ -0.07
CPSF1-207ENST00000531727 ARF1P84077 181 aaKnown RBP14.63□□□□□ -0.07
CPSF1-207ENST00000531727 CDK6Q00534 326 aa14.63□□□□□ -0.07
CPSF1-207ENST00000531727 C1DQ13901 141 aaKnown RBP14.63□□□□□ -0.07
CPSF1-207ENST00000531727 ALG10BQ5I7T1 473 aa14.63□□□□□ -0.07
CPSF1-207ENST00000531727 FAM91A1Q658Y4 838 aa14.63□□□□□ -0.07
CPSF1-207ENST00000531727 NET1Q7Z628 596 aaPredicted RBP14.63□□□□□ -0.07
CPSF1-207ENST00000531727 ADPRHL1Q8NDY3 354 aa14.63□□□□□ -0.07
CPSF1-207ENST00000531727 LRRC8CQ8TDW0 803 aa14.63□□□□□ -0.07
CPSF1-207ENST00000531727 GPR35Q9HC97 309 aa14.63□□□□□ -0.07
CPSF1-207ENST00000531727 KLHL14Q9P2G3 628 aa14.63□□□□□ -0.07
CPSF1-207ENST00000531727 TESQ9UGI8 421 aaKnown RBP14.63□□□□□ -0.07
CPSF1-207ENST00000531727 LOC102725191A0A1B0GVB3 256 aa14.62□□□□□ -0.07
CPSF1-207ENST00000531727 VWC2LB2RUY7 222 aa14.62□□□□□ -0.07
Retrieved 100 of 20,778 RNA–protein pairs in 50.6 ms