RNA–Protein interactions for RNA: ENST00000531480.2

CPSF1-206, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 3

Gene CPSF1, Length 789 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-206ENST00000531480 M0R082 166 aa12.85□□□□□ -0.35
CPSF1-206ENST00000531480 GPR171O14626 319 aa12.85□□□□□ -0.35
CPSF1-206ENST00000531480 ENTPD5O75356 428 aa12.85□□□□□ -0.35
CPSF1-206ENST00000531480 PLGP00747 810 aaPredicted RBP12.85□□□□□ -0.35
CPSF1-206ENST00000531480 H1F0P07305 194 aaKnown RBP12.85□□□□□ -0.35
CPSF1-206ENST00000531480 RAP2AP10114 183 aa12.85□□□□□ -0.35
CPSF1-206ENST00000531480 GRPRP30550 384 aa12.85□□□□□ -0.35
CPSF1-206ENST00000531480 NTF4P34130 210 aa12.85□□□□□ -0.35
CPSF1-206ENST00000531480 LIMS1P48059 325 aa12.85□□□□□ -0.35
CPSF1-206ENST00000531480 ASCL1P50553 236 aa12.85□□□□□ -0.35
CPSF1-206ENST00000531480 PRKCDQ05655 676 aa12.85□□□□□ -0.35
CPSF1-206ENST00000531480 CHRNB3Q05901 458 aa12.85□□□□□ -0.35
CPSF1-206ENST00000531480 MS4A18Q3C1V0 323 aa12.85□□□□□ -0.35
CPSF1-206ENST00000531480 MCEMP1Q8IX19 187 aa12.85□□□□□ -0.35
CPSF1-206ENST00000531480 PAPD5Q8NDF8 572 aaKnown RBP12.85□□□□□ -0.35
CPSF1-206ENST00000531480 PFN4Q8NHR9 129 aa12.85□□□□□ -0.35
CPSF1-206ENST00000531480 ZNF417Q8TAU3 575 aa12.85□□□□□ -0.35
CPSF1-206ENST00000531480 RNF217Q8TC41 542 aa12.85□□□□□ -0.35
CPSF1-206ENST00000531480 TMEM45BQ96B21 275 aa12.85□□□□□ -0.35
CPSF1-206ENST00000531480 ZNF587Q96SQ5 575 aaPredicted RBP12.85□□□□□ -0.35
CPSF1-206ENST00000531480 KCNJ16Q9NPI9 418 aa12.85□□□□□ -0.35
CPSF1-206ENST00000531480 C20orf141Q9NUB4 165 aa12.85□□□□□ -0.35
CPSF1-206ENST00000531480 EMC3Q9P0I2 261 aa12.85□□□□□ -0.35
CPSF1-206ENST00000531480 C6orf203Q9P0P8 240 aaPredicted RBP12.85□□□□□ -0.35
CPSF1-206ENST00000531480 SEC14L4Q9UDX3 406 aa12.85□□□□□ -0.35
CPSF1-206ENST00000531480 CLEC4AQ9UMR7 237 aa12.85□□□□□ -0.35
CPSF1-206ENST00000531480 MED31Q9Y3C7 131 aa12.85□□□□□ -0.35
CPSF1-206ENST00000531480 AP4S1Q9Y587 144 aa12.85□□□□□ -0.35
CPSF1-206ENST00000531480 FLVCR1Q9Y5Y0 555 aa12.85□□□□□ -0.35
CPSF1-206ENST00000531480 DHRS12A0PJE2 317 aa12.84□□□□□ -0.35
CPSF1-206ENST00000531480 NKX2-6A6NCS4 301 aa12.84□□□□□ -0.35
CPSF1-206ENST00000531480 ENO4A6NNW6 628 aa12.84□□□□□ -0.35
CPSF1-206ENST00000531480 LRRN3E7EW58 273 aa12.84□□□□□ -0.35
CPSF1-206ENST00000531480 PLPP3O14495 311 aa12.84□□□□□ -0.35
CPSF1-206ENST00000531480 DIRAS1O95057 198 aa12.84□□□□□ -0.35
CPSF1-206ENST00000531480 ATP6V1G2O95670 118 aa12.84□□□□□ -0.35
CPSF1-206ENST00000531480 SMIM11AP58511 58 aa12.84□□□□□ -0.35
CPSF1-206ENST00000531480 LSM11P83369 360 aaKnown RBP eCLIP12.84□□□□□ -0.358e-7■■■□□ 17
CPSF1-206ENST00000531480 ZP4Q12836 540 aa12.84□□□□□ -0.35
CPSF1-206ENST00000531480 TMEM201Q5SNT2 666 aa12.84□□□□□ -0.35
CPSF1-206ENST00000531480 PPP4R4Q6NUP7 873 aa12.84□□□□□ -0.35
CPSF1-206ENST00000531480 ZNF474Q6S9Z5 364 aaPredicted RBP12.84□□□□□ -0.35
CPSF1-206ENST00000531480 TFAP2EQ6VUC0 442 aa12.84□□□□□ -0.35
CPSF1-206ENST00000531480 MBOAT2Q6ZWT7 520 aa12.84□□□□□ -0.35
CPSF1-206ENST00000531480 NUFIP2Q7Z417 695 aaKnown RBP12.84□□□□□ -0.35
CPSF1-206ENST00000531480 CNEP1R1Q8N9A8 125 aa12.84□□□□□ -0.35
CPSF1-206ENST00000531480 OR9K2Q8NGE7 335 aa12.84□□□□□ -0.35
CPSF1-206ENST00000531480 OR5J2Q8NH18 312 aa12.84□□□□□ -0.35
CPSF1-206ENST00000531480 CANT1Q8WVQ1 401 aa12.84□□□□□ -0.35
CPSF1-206ENST00000531480 SLC25A36Q96CQ1 311 aa12.84□□□□□ -0.35
CPSF1-206ENST00000531480 DUS3LQ96G46 650 aaKnown RBP12.84□□□□□ -0.35
CPSF1-206ENST00000531480 OXGR1Q96P68 337 aa12.84□□□□□ -0.35
CPSF1-206ENST00000531480 SEPHS2Q99611 448 aa12.84□□□□□ -0.35
CPSF1-206ENST00000531480 VCXQ9H320 206 aa12.84□□□□□ -0.35
CPSF1-206ENST00000531480 RNPEPL1Q9HAU8 725 aa12.84□□□□□ -0.35
CPSF1-206ENST00000531480 S100A14Q9HCY8 104 aa12.84□□□□□ -0.35
CPSF1-206ENST00000531480 NPDC1Q9NQX5 325 aaPredicted RBP12.84□□□□□ -0.35
CPSF1-206ENST00000531480 C8orf4Q9NR00 106 aa12.84□□□□□ -0.35
CPSF1-206ENST00000531480 NANSQ9NR45 359 aa12.84□□□□□ -0.35
CPSF1-206ENST00000531480 STX18Q9P2W9 335 aaKnown RBP12.84□□□□□ -0.35
CPSF1-206ENST00000531480 FOXD3Q9UJU5 478 aaPredicted RBP12.84□□□□□ -0.35
CPSF1-206ENST00000531480 TRBV4-1A0A0J9YWV2 114 aa12.83□□□□□ -0.36
CPSF1-206ENST00000531480 FAM90A27PA6NNH2 459 aa12.83□□□□□ -0.36
CPSF1-206ENST00000531480 KRT36O76013 467 aa12.83□□□□□ -0.36
CPSF1-206ENST00000531480 OR7A10O76100 309 aa12.83□□□□□ -0.36
CPSF1-206ENST00000531480 CNOT4O95628 575 aaKnown RBP12.83□□□□□ -0.36
CPSF1-206ENST00000531480 BAG2O95816 211 aa12.83□□□□□ -0.36
CPSF1-206ENST00000531480 CH25HO95992 272 aa12.83□□□□□ -0.36
CPSF1-206ENST00000531480 PTNP21246 168 aa12.83□□□□□ -0.36
CPSF1-206ENST00000531480 COL8A1P27658 744 aa12.83□□□□□ -0.36
CPSF1-206ENST00000531480 OR3A2P47893 321 aa12.83□□□□□ -0.36
CPSF1-206ENST00000531480 RPS4XP62701 263 aaKnown RBP12.83□□□□□ -0.36
CPSF1-206ENST00000531480 SIRPAP78324 504 aa12.83□□□□□ -0.36
CPSF1-206ENST00000531480 SLC34A1Q06495 639 aa12.83□□□□□ -0.36
CPSF1-206ENST00000531480 FHL1Q13642 323 aa12.83□□□□□ -0.36
CPSF1-206ENST00000531480 TMEM225Q6GV28 225 aa12.83□□□□□ -0.36
CPSF1-206ENST00000531480 PODNL1Q6PEZ8 512 aa12.83□□□□□ -0.36
CPSF1-206ENST00000531480 TMPRSS11FQ6ZWK6 438 aa12.83□□□□□ -0.36
CPSF1-206ENST00000531480 CREB3L2Q70SY1 520 aa12.83□□□□□ -0.36
CPSF1-206ENST00000531480 PXKQ7Z7A4 578 aa12.83□□□□□ -0.36
CPSF1-206ENST00000531480 GALNT5Q7Z7M9 940 aa12.83□□□□□ -0.36
CPSF1-206ENST00000531480 EPHX4Q8IUS5 362 aa12.83□□□□□ -0.36
CPSF1-206ENST00000531480 NRMQ8IXM6 262 aa12.83□□□□□ -0.36
CPSF1-206ENST00000531480 RNASE6Q93091 150 aaKnown RBP12.83□□□□□ -0.36
CPSF1-206ENST00000531480 BPIFA2Q96DR5 249 aa12.83□□□□□ -0.36
CPSF1-206ENST00000531480 SGTBQ96EQ0 304 aa12.83□□□□□ -0.36
CPSF1-206ENST00000531480 ASPNQ9BXN1 380 aa12.83□□□□□ -0.36
CPSF1-206ENST00000531480 ENKD1Q9H0I2 346 aa12.83□□□□□ -0.36
CPSF1-206ENST00000531480 CCM2LQ9NUG4 571 aaPredicted RBP12.83□□□□□ -0.36
CPSF1-206ENST00000531480 TAS2R5Q9NYW4 299 aa12.83□□□□□ -0.36
CPSF1-206ENST00000531480 PROCRQ9UNN8 238 aa12.83□□□□□ -0.36
CPSF1-206ENST00000531480 LYVE1Q9Y5Y7 322 aa12.83□□□□□ -0.36
CPSF1-206ENST00000531480 SH3PXD2BA1X283 911 aa12.82□□□□□ -0.36
CPSF1-206ENST00000531480 C19orf84I3L1E1 186 aa12.82□□□□□ -0.36
CPSF1-206ENST00000531480 KPNA4O00629 521 aaPredicted RBP12.82□□□□□ -0.36
CPSF1-206ENST00000531480 KLF4O43474 513 aa12.82□□□□□ -0.36
CPSF1-206ENST00000531480 TRAF3IP2O43734 574 aaPredicted RBP12.82□□□□□ -0.36
CPSF1-206ENST00000531480 PIP5K1CO60331 668 aa12.82□□□□□ -0.36
CPSF1-206ENST00000531480 ZNF432O94892 652 aa12.82□□□□□ -0.36
CPSF1-206ENST00000531480 GADD45GO95257 159 aa12.82□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 44.5 ms