RNA–Protein interactions for RNA: ENST00000531032.5

VPS28-214, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 1 (best)

Gene VPS28, Length 573 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-214ENST00000531032 IGKV3-15P01624 115 aa9.87□□□□□ -0.83
VPS28-214ENST00000531032 CRYAAP02489 173 aa9.87□□□□□ -0.83
VPS28-214ENST00000531032 CECR9P0C854 216 aa9.87□□□□□ -0.83
VPS28-214ENST00000531032 HNRNPCL4P0DMR1 293 aa9.87□□□□□ -0.83
VPS28-214ENST00000531032 PNMTP11086 282 aa9.87□□□□□ -0.83
VPS28-214ENST00000531032 HOXB1P14653 301 aaPredicted RBP9.87□□□□□ -0.83
VPS28-214ENST00000531032 NCF2P19878 526 aaPredicted RBP9.87□□□□□ -0.83
VPS28-214ENST00000531032 IGFBP5P24593 272 aa9.87□□□□□ -0.83
VPS28-214ENST00000531032 SH3BGRP55822 239 aaPredicted RBP9.87□□□□□ -0.83
VPS28-214ENST00000531032 UBE2NP61088 152 aaKnown RBP9.87□□□□□ -0.83
VPS28-214ENST00000531032 STX1BP61266 288 aa9.87□□□□□ -0.83
VPS28-214ENST00000531032 EGR4Q05215 589 aa9.87□□□□□ -0.83
VPS28-214ENST00000531032 GGTLC2Q14390 218 aa9.87□□□□□ -0.83
VPS28-214ENST00000531032 EFNB3Q15768 340 aa9.87□□□□□ -0.83
VPS28-214ENST00000531032 ADIPOQQ15848 244 aa9.87□□□□□ -0.83
VPS28-214ENST00000531032 GTDC1Q4AE62 458 aa9.87□□□□□ -0.83
VPS28-214ENST00000531032 NIPAL3Q6P499 406 aa9.87□□□□□ -0.83
VPS28-214ENST00000531032 ANKRD16Q6P6B7 361 aa9.87□□□□□ -0.83
VPS28-214ENST00000531032 ARIH2OSQ8N7S6 290 aa9.87□□□□□ -0.83
VPS28-214ENST00000531032 ANKK1Q8NFD2 765 aa9.87□□□□□ -0.83
VPS28-214ENST00000531032 SLC35B4Q969S0 331 aa9.87□□□□□ -0.83
VPS28-214ENST00000531032 VPS33AQ96AX1 596 aa9.87□□□□□ -0.83
VPS28-214ENST00000531032 ITCHQ96J02 903 aa9.87□□□□□ -0.83
VPS28-214ENST00000531032 KCNS3Q9BQ31 491 aa9.87□□□□□ -0.83
VPS28-214ENST00000531032 PRR14Q9BWN1 585 aa9.87□□□□□ -0.83
VPS28-214ENST00000531032 PLK3Q9H4B4 646 aa9.87□□□□□ -0.83
VPS28-214ENST00000531032 ARMC7Q9H6L4 198 aa9.87□□□□□ -0.83
VPS28-214ENST00000531032 RMND5AQ9H871 391 aa9.87□□□□□ -0.83
VPS28-214ENST00000531032 ZIM2Q9NZV7 527 aa9.87□□□□□ -0.83
VPS28-214ENST00000531032 ZNF232Q9UNY5 417 aa9.87□□□□□ -0.83
VPS28-214ENST00000531032 RCE1Q9Y256 329 aa9.87□□□□□ -0.83
VPS28-214ENST00000531032 IFT52Q9Y366 437 aa9.87□□□□□ -0.83
VPS28-214ENST00000531032 A0A096LPE4 126 aa9.86□□□□□ -0.83
VPS28-214ENST00000531032 IGHV4-61A0A0C4DH41 118 aa9.86□□□□□ -0.83
VPS28-214ENST00000531032 A0A1W2PPZ6 126 aa9.86□□□□□ -0.83
VPS28-214ENST00000531032 TMEM247A6NEH6 219 aa9.86□□□□□ -0.83
VPS28-214ENST00000531032 RPL36A-HNRNPH2H7BZ11 118 aa9.86□□□□□ -0.83
VPS28-214ENST00000531032 NR5A2O00482 541 aa9.86□□□□□ -0.83
VPS28-214ENST00000531032 UBDO15205 165 aa9.86□□□□□ -0.83
VPS28-214ENST00000531032 POLR3GO15318 223 aaPredicted RBP9.86□□□□□ -0.83
VPS28-214ENST00000531032 OR4A8P0C604 315 aa9.86□□□□□ -0.83
VPS28-214ENST00000531032 CALCRP30988 508 aa9.86□□□□□ -0.83
VPS28-214ENST00000531032 PPOXP50336 477 aa9.86□□□□□ -0.83
VPS28-214ENST00000531032 TUBA1BP68363 451 aa9.86□□□□□ -0.83
VPS28-214ENST00000531032 TUBA4AP68366 448 aa9.86□□□□□ -0.83
VPS28-214ENST00000531032 ROR2Q01974 943 aaKnown RBP9.86□□□□□ -0.83
VPS28-214ENST00000531032 KRTAP24-1Q3LI83 254 aa9.86□□□□□ -0.83
VPS28-214ENST00000531032 SLC9B1Q4ZJI4 515 aa9.86□□□□□ -0.83
VPS28-214ENST00000531032 FAM166AQ6J272 317 aa9.86□□□□□ -0.83
VPS28-214ENST00000531032 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP9.86□□□□□ -0.835e-7■■■□□ 19.1
VPS28-214ENST00000531032 C6orf89Q6UWU4 347 aa9.86□□□□□ -0.83
VPS28-214ENST00000531032 TUBA1AQ71U36 451 aa9.86□□□□□ -0.83
VPS28-214ENST00000531032 SLC46A3Q7Z3Q1 461 aa9.86□□□□□ -0.83
VPS28-214ENST00000531032 ANKS4BQ8N8V4 417 aa9.86□□□□□ -0.83
VPS28-214ENST00000531032 NUP37Q8NFH4 326 aa9.86□□□□□ -0.83
VPS28-214ENST00000531032 MSI2Q96DH6 328 aaKnown RBP9.86□□□□□ -0.83
VPS28-214ENST00000531032 ATP6V1G3Q96LB4 118 aa9.86□□□□□ -0.83
VPS28-214ENST00000531032 FOXN4Q96NZ1 517 aa9.86□□□□□ -0.83
VPS28-214ENST00000531032 SEC61A2Q9H9S3 476 aa9.86□□□□□ -0.83
VPS28-214ENST00000531032 CACYBPQ9HB71 228 aaKnown RBP9.86□□□□□ -0.83
VPS28-214ENST00000531032 BCL2L10Q9HD36 194 aa9.86□□□□□ -0.83
VPS28-214ENST00000531032 A4GALTQ9NPC4 353 aa9.86□□□□□ -0.83
VPS28-214ENST00000531032 B3GAT1Q9P2W7 334 aa9.86□□□□□ -0.83
VPS28-214ENST00000531032 KCNS2Q9ULS6 477 aa9.86□□□□□ -0.83
VPS28-214ENST00000531032 LOC100289279A0A1B0GTE1 492 aa9.85□□□□□ -0.83
VPS28-214ENST00000531032 SLC35F4A4IF30 521 aa9.85□□□□□ -0.83
VPS28-214ENST00000531032 NUDT7P0C024 238 aa9.85□□□□□ -0.83
VPS28-214ENST00000531032 BMP2P12643 396 aa9.85□□□□□ -0.83
VPS28-214ENST00000531032 APEHP13798 732 aaKnown RBP9.85□□□□□ -0.83
VPS28-214ENST00000531032 ZNF43P17038 809 aa9.85□□□□□ -0.83
VPS28-214ENST00000531032 HOXB9P17482 250 aaPredicted RBP9.85□□□□□ -0.83
VPS28-214ENST00000531032 SRD5A1P18405 259 aa9.85□□□□□ -0.83
VPS28-214ENST00000531032 RPS5P46782 204 aaKnown RBP9.85□□□□□ -0.83
VPS28-214ENST00000531032 POLR2JP52435 117 aaKnown RBP9.85□□□□□ -0.83
VPS28-214ENST00000531032 CLDN17P56750 224 aa9.85□□□□□ -0.83
VPS28-214ENST00000531032 HOXC5Q00444 222 aa9.85□□□□□ -0.83
VPS28-214ENST00000531032 FADDQ13158 208 aa9.85□□□□□ -0.83
VPS28-214ENST00000531032 RGNQ15493 299 aa9.85□□□□□ -0.83
VPS28-214ENST00000531032 ZNF311Q5JNZ3 666 aa9.85□□□□□ -0.83
VPS28-214ENST00000531032 C6orf10Q5SRN2 563 aa9.85□□□□□ -0.83
VPS28-214ENST00000531032 FAM120AOSQ5T036 256 aa9.85□□□□□ -0.83
VPS28-214ENST00000531032 HDXQ7Z353 690 aa9.85□□□□□ -0.83
VPS28-214ENST00000531032 MAVSQ7Z434 540 aa9.85□□□□□ -0.83
VPS28-214ENST00000531032 MYPOPQ86VE0 399 aaPredicted RBP9.85□□□□□ -0.83
VPS28-214ENST00000531032 MIER2Q8N344 545 aa9.85□□□□□ -0.83
VPS28-214ENST00000531032 KDM8Q8N371 416 aa9.85□□□□□ -0.83
VPS28-214ENST00000531032 OR4F15Q8NGB8 312 aa9.85□□□□□ -0.83
VPS28-214ENST00000531032 OR9I1Q8NGQ6 314 aa9.85□□□□□ -0.83
VPS28-214ENST00000531032 GTF2H4Q92759 462 aa9.85□□□□□ -0.83
VPS28-214ENST00000531032 SLC25A36Q96CQ1 311 aa9.85□□□□□ -0.83
VPS28-214ENST00000531032 KTI12Q96EK9 354 aaPredicted RBP9.85□□□□□ -0.83
VPS28-214ENST00000531032 OXGR1Q96P68 337 aa9.85□□□□□ -0.83
VPS28-214ENST00000531032 VRK1Q99986 396 aaPredicted RBP9.85□□□□□ -0.83
VPS28-214ENST00000531032 BPESC1Q9GZL8 116 aa9.85□□□□□ -0.83
VPS28-214ENST00000531032 ZNF442Q9H7R0 627 aa9.85□□□□□ -0.83
VPS28-214ENST00000531032 C12orf10Q9HB07 376 aa9.85□□□□□ -0.83
VPS28-214ENST00000531032 SEC14L4Q9UDX3 406 aa9.85□□□□□ -0.83
VPS28-214ENST00000531032 FBXO9Q9UK97 447 aaPredicted RBP9.85□□□□□ -0.83
VPS28-214ENST00000531032 PCDHB14Q9Y5E9 798 aa9.85□□□□□ -0.83
VPS28-214ENST00000531032 USH1CQ9Y6N9 552 aa9.85□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 34.8 ms