RNA–Protein interactions for RNA: ENST00000530983.5

VPS28-213, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 2,337 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-213ENST00000530983 COL28A1Q2UY09 1125 aa17.6■□□□□ 0.41
VPS28-213ENST00000530983 GPR139Q6DWJ6 353 aa17.6■□□□□ 0.41
VPS28-213ENST00000530983 OR4C3Q8NH37 302 aa17.6■□□□□ 0.41
VPS28-213ENST00000530983 HRASLSQ9HDD0 168 aa17.6■□□□□ 0.41
VPS28-213ENST00000530983 ZNF281Q9Y2X9 895 aa17.6■□□□□ 0.41
VPS28-213ENST00000530983 ZNF337Q9Y3M9 751 aa17.6■□□□□ 0.41
VPS28-213ENST00000530983 NPTNQ9Y639 398 aa17.6■□□□□ 0.41
VPS28-213ENST00000530983 SPTBP11277 2137 aa17.6■□□□□ 0.41
VPS28-213ENST00000530983 EFCAB7A8K855 629 aa17.6■□□□□ 0.41
VPS28-213ENST00000530983 G3V3Q6 166 aa17.6■□□□□ 0.41
VPS28-213ENST00000530983 CDC123O75794 336 aaPredicted RBP17.6■□□□□ 0.41
VPS28-213ENST00000530983 DNASE1P24855 282 aa17.6■□□□□ 0.41
VPS28-213ENST00000530983 ZNF684Q5T5D7 378 aa17.6■□□□□ 0.41
VPS28-213ENST00000530983 LINC01590Q5TEZ4 76 aa17.6■□□□□ 0.41
VPS28-213ENST00000530983 STPG1Q5TH74 334 aa17.6■□□□□ 0.41
VPS28-213ENST00000530983 SEZ6L2Q6UXD5 910 aa17.6■□□□□ 0.41
VPS28-213ENST00000530983 KIAA1324Q6UXG2 1013 aaKnown RBP17.6■□□□□ 0.41
VPS28-213ENST00000530983 ZNF433Q8N7K0 673 aaPredicted RBP17.6■□□□□ 0.41
VPS28-213ENST00000530983 OR52I2Q8NH67 350 aa17.6■□□□□ 0.41
VPS28-213ENST00000530983 SLC37A2Q8TED4 501 aa17.6■□□□□ 0.41
VPS28-213ENST00000530983 C3orf49Q96BT1 292 aa17.6■□□□□ 0.41
VPS28-213ENST00000530983 DPCDQ9BVM2 203 aaPredicted RBP17.6■□□□□ 0.41
VPS28-213ENST00000530983 LIN7BQ9HAP6 207 aa17.6■□□□□ 0.41
VPS28-213ENST00000530983 A0A1B0GVT2 93 aa17.59■□□□□ 0.41
VPS28-213ENST00000530983 FAM171A2A8MVW0 826 aa17.59■□□□□ 0.41
VPS28-213ENST00000530983 PPM1BO75688 479 aa17.59■□□□□ 0.41
VPS28-213ENST00000530983 CSTAP01040 98 aa17.59■□□□□ 0.41
VPS28-213ENST00000530983 CELA2BP08218 269 aaPredicted RBP17.59■□□□□ 0.41
VPS28-213ENST00000530983 CT45A8P0DMV1 189 aa17.59■□□□□ 0.41
VPS28-213ENST00000530983 CT45A9P0DMV2 189 aa17.59■□□□□ 0.41
VPS28-213ENST00000530983 ST6GAL1P15907 406 aa17.59■□□□□ 0.41
VPS28-213ENST00000530983 CTRB1P17538 263 aa17.59■□□□□ 0.41
VPS28-213ENST00000530983 SELENOPP49908 381 aa17.59■□□□□ 0.41
VPS28-213ENST00000530983 CLDN12P56749 244 aa17.59■□□□□ 0.41
VPS28-213ENST00000530983 AANATQ16613 207 aa17.59■□□□□ 0.41
VPS28-213ENST00000530983 CT45A2Q5DJT8 189 aa17.59■□□□□ 0.41
VPS28-213ENST00000530983 FAM69AQ5T7M9 428 aa17.59■□□□□ 0.41
VPS28-213ENST00000530983 CTRB2Q6GPI1 263 aa17.59■□□□□ 0.41
VPS28-213ENST00000530983 Q6ZSR6 202 aa17.59■□□□□ 0.41
VPS28-213ENST00000530983 FCRLAQ7L513 359 aa17.59■□□□□ 0.41
VPS28-213ENST00000530983 SERPINA12Q8IW75 414 aa17.59■□□□□ 0.41
VPS28-213ENST00000530983 RBM18Q96H35 190 aaKnown RBP17.59■□□□□ 0.41
VPS28-213ENST00000530983 B3GNT4Q9C0J1 378 aa17.59■□□□□ 0.41
VPS28-213ENST00000530983 HCN3Q9P1Z3 774 aa17.59■□□□□ 0.41
VPS28-213ENST00000530983 SCP2D1Q9UJQ7 156 aa17.59■□□□□ 0.41
VPS28-213ENST00000530983 A0A0A6YYC8 382 aaPredicted RBP17.59■□□□□ 0.41
VPS28-213ENST00000530983 I3L1I5 382 aaPredicted RBP17.59■□□□□ 0.41
VPS28-213ENST00000530983 PDCD5O14737 125 aa17.59■□□□□ 0.41
VPS28-213ENST00000530983 KHNYNO15037 678 aaKnown RBP17.59■□□□□ 0.41
VPS28-213ENST00000530983 SERPINI2O75830 405 aa17.59■□□□□ 0.41
VPS28-213ENST00000530983 SSTR2P30874 369 aa17.59■□□□□ 0.41
VPS28-213ENST00000530983 HSF2Q03933 536 aa17.59■□□□□ 0.41
VPS28-213ENST00000530983 ZSWIM7Q19AV6 140 aa17.59■□□□□ 0.41
VPS28-213ENST00000530983 ISXQ2M1V0 245 aa17.59■□□□□ 0.41
VPS28-213ENST00000530983 MOSPD2Q8NHP6 518 aa17.59■□□□□ 0.41
VPS28-213ENST00000530983 GPBAR1Q8TDU6 330 aa17.59■□□□□ 0.41
VPS28-213ENST00000530983 MRPL48Q96GC5 212 aaKnown RBP17.59■□□□□ 0.41
VPS28-213ENST00000530983 GPR174Q9BXC1 333 aa17.59■□□□□ 0.41
VPS28-213ENST00000530983 TSPAN10Q9H1Z9 355 aaPredicted RBP17.59■□□□□ 0.41
VPS28-213ENST00000530983 Q9N2J8 555 aa17.59■□□□□ 0.41
VPS28-213ENST00000530983 RABL2AQ9UBK7 228 aaPredicted RBP17.59■□□□□ 0.41
VPS28-213ENST00000530983 ZNF346Q9UL40 294 aaKnown RBP17.59■□□□□ 0.41
VPS28-213ENST00000530983 RABL2BQ9UNT1 228 aa17.59■□□□□ 0.41
VPS28-213ENST00000530983 IGKV1D-42A0A075B6H8 117 aa17.58■□□□□ 0.41
VPS28-213ENST00000530983 A0A1B0GTQ1 180 aa17.58■□□□□ 0.41
VPS28-213ENST00000530983 OR2W5A6NFC9 320 aa17.58■□□□□ 0.41
VPS28-213ENST00000530983 SERINC4A6NH21 518 aa17.58■□□□□ 0.41
VPS28-213ENST00000530983 A8MUA0 341 aa17.58■□□□□ 0.41
VPS28-213ENST00000530983 GABARAPH6UMI1 98 aa17.58■□□□□ 0.41
VPS28-213ENST00000530983 GLCEO94923 617 aa17.58■□□□□ 0.41
VPS28-213ENST00000530983 MPC2O95563 127 aa17.58■□□□□ 0.41
VPS28-213ENST00000530983 ZNF81P51508 661 aa17.58■□□□□ 0.41
VPS28-213ENST00000530983 YPEL5P62699 121 aa17.58■□□□□ 0.41
VPS28-213ENST00000530983 STX4Q12846 297 aa17.58■□□□□ 0.41
VPS28-213ENST00000530983 EXOSC2Q13868 293 aaKnown RBP17.58■□□□□ 0.41
VPS28-213ENST00000530983 HDDC2Q7Z4H3 204 aa17.58■□□□□ 0.41
VPS28-213ENST00000530983 CDH24Q86UP0 819 aa17.58■□□□□ 0.41
VPS28-213ENST00000530983 SLC22A18ASQ8N1D0 253 aa17.58■□□□□ 0.41
VPS28-213ENST00000530983 ESX1Q8N693 406 aa17.58■□□□□ 0.41
VPS28-213ENST00000530983 GALNT11Q8NCW6 608 aa17.58■□□□□ 0.41
VPS28-213ENST00000530983 GPX7Q96SL4 187 aaPredicted RBP17.58■□□□□ 0.41
VPS28-213ENST00000530983 G6PC3Q9BUM1 346 aa17.58■□□□□ 0.41
VPS28-213ENST00000530983 ALG12Q9BV10 488 aa17.58■□□□□ 0.41
VPS28-213ENST00000530983 ZNF436Q9C0F3 470 aaPredicted RBP17.58■□□□□ 0.41
VPS28-213ENST00000530983 SPRTNQ9H040 489 aaPredicted RBP17.58■□□□□ 0.41
VPS28-213ENST00000530983 C12orf4Q9NQ89 552 aa17.58■□□□□ 0.41
VPS28-213ENST00000530983 ZNF224Q9NZL3 707 aa17.58■□□□□ 0.41
VPS28-213ENST00000530983 EMC3Q9P0I2 261 aa17.58■□□□□ 0.41
VPS28-213ENST00000530983 KLK11Q9UBX7 282 aa17.58■□□□□ 0.41
VPS28-213ENST00000530983 PSMB1P20618 241 aaKnown RBP17.58■□□□□ 0.4
VPS28-213ENST00000530983 CDKN2AP42771 156 aaKnown RBP17.58■□□□□ 0.4
VPS28-213ENST00000530983 PTH2RP49190 550 aa17.58■□□□□ 0.4
VPS28-213ENST00000530983 VEGFCP49767 419 aa17.58■□□□□ 0.4
VPS28-213ENST00000530983 TPMTP51580 245 aa17.58■□□□□ 0.4
VPS28-213ENST00000530983 SNTA1Q13424 505 aa17.58■□□□□ 0.4
VPS28-213ENST00000530983 IL10RAQ13651 578 aa17.58■□□□□ 0.4
VPS28-213ENST00000530983 LEG1Q6P5S2 330 aa17.58■□□□□ 0.4
VPS28-213ENST00000530983 Q6ZTK2 550 aa17.58■□□□□ 0.4
VPS28-213ENST00000530983 SLC35F3Q8IY50 421 aa17.58■□□□□ 0.4
VPS28-213ENST00000530983 BCORP1Q8N888 145 aa17.58■□□□□ 0.4
Retrieved 100 of 20,778 RNA–protein pairs in 30.4 ms