RNA–Protein interactions for RNA: ENST00000527889.5

CD44-226, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 543 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-226ENST00000527889 CENPNQ96H22 339 aaPredicted RBP3.81□□□□□ -1.8
CD44-226ENST00000527889 WDYHV1Q96HA8 205 aa3.81□□□□□ -1.8
CD44-226ENST00000527889 CEP19Q96LK0 163 aa3.81□□□□□ -1.8
CD44-226ENST00000527889 ZNF570Q96NI8 536 aa3.81□□□□□ -1.8
CD44-226ENST00000527889 DGAT2Q96PD7 388 aa3.81□□□□□ -1.8
CD44-226ENST00000527889 WFDC6Q9BQY6 131 aa3.81□□□□□ -1.8
CD44-226ENST00000527889 RSPO3Q9BXY4 272 aaPredicted RBP3.81□□□□□ -1.8
CD44-226ENST00000527889 RIBC2Q9H4K1 309 aa3.81□□□□□ -1.8
CD44-226ENST00000527889 OPA3Q9H6K4 179 aa3.81□□□□□ -1.8
CD44-226ENST00000527889 MAGIXQ9H6Y5 334 aa3.81□□□□□ -1.8
CD44-226ENST00000527889 NTN4Q9HB63 628 aa3.81□□□□□ -1.8
CD44-226ENST00000527889 FOLH1BQ9HBA9 442 aa3.81□□□□□ -1.8
CD44-226ENST00000527889 PARD6AQ9NPB6 346 aa3.81□□□□□ -1.8
CD44-226ENST00000527889 SLC22A11Q9NSA0 550 aa3.81□□□□□ -1.8
CD44-226ENST00000527889 PTGFRNQ9P2B2 879 aa3.81□□□□□ -1.8
CD44-226ENST00000527889 P2RX2Q9UBL9 471 aa3.81□□□□□ -1.8
CD44-226ENST00000527889 DNAJB9Q9UBS3 223 aa3.81□□□□□ -1.8
CD44-226ENST00000527889 CDC14AQ9UNH5 594 aa3.81□□□□□ -1.8
CD44-226ENST00000527889 ERVK-19Q9WJR5 959 aa3.81□□□□□ -1.8
CD44-226ENST00000527889 DTX4Q9Y2E6 619 aa3.81□□□□□ -1.8
CD44-226ENST00000527889 U3KQV3 271 aa3.81□□□□□ -1.8
CD44-226ENST00000527889 TLN1Q9Y490 2541 aaKnown RBP3.8□□□□□ -1.8
CD44-226ENST00000527889 SPG11Q96JI7 2443 aa3.8□□□□□ -1.8
CD44-226ENST00000527889 IGHV3-20A0A0C4DH32 117 aa3.8□□□□□ -1.8
CD44-226ENST00000527889 CENPVL1A0A0U1RR11 272 aa3.8□□□□□ -1.8
CD44-226ENST00000527889 hCG_1809904A0A1W2PP81 198 aa3.8□□□□□ -1.8
CD44-226ENST00000527889 A0A1W2PPE2 198 aa3.8□□□□□ -1.8
CD44-226ENST00000527889 A0A1W2PR64 198 aa3.8□□□□□ -1.8
CD44-226ENST00000527889 C17orf105B2RV13 164 aa3.8□□□□□ -1.8
CD44-226ENST00000527889 TEX22C9J3V5 150 aa3.8□□□□□ -1.8
CD44-226ENST00000527889 H0Y8G0 127 aa3.8□□□□□ -1.8
CD44-226ENST00000527889 GNGT2O14610 69 aa3.8□□□□□ -1.8
CD44-226ENST00000527889 EI24O14681 340 aa3.8□□□□□ -1.8
CD44-226ENST00000527889 ACOX3O15254 700 aa3.8□□□□□ -1.8
CD44-226ENST00000527889 IDH3BO43837 385 aa3.8□□□□□ -1.8
CD44-226ENST00000527889 PEX1O43933 1283 aa3.8□□□□□ -1.8
CD44-226ENST00000527889 CNOT3O75175 753 aaKnown RBP3.8□□□□□ -1.8
CD44-226ENST00000527889 PDE9AO76083 593 aa3.8□□□□□ -1.8
CD44-226ENST00000527889 MFN2O95140 757 aa3.8□□□□□ -1.8
CD44-226ENST00000527889 SNAP29O95721 258 aa3.8□□□□□ -1.8
CD44-226ENST00000527889 CLPSP04118 112 aa3.8□□□□□ -1.8
CD44-226ENST00000527889 ALPPP05187 535 aa3.8□□□□□ -1.8
CD44-226ENST00000527889 FABP3P05413 133 aa3.8□□□□□ -1.8
CD44-226ENST00000527889 GP1BAP07359 652 aa3.8□□□□□ -1.8
CD44-226ENST00000527889 SPARCP09486 303 aa3.8□□□□□ -1.8
CD44-226ENST00000527889 LYL1P12980 280 aa3.8□□□□□ -1.8
CD44-226ENST00000527889 ACADSP16219 412 aa3.8□□□□□ -1.8
CD44-226ENST00000527889 ZNF26P17031 533 aaPredicted RBP3.8□□□□□ -1.8
CD44-226ENST00000527889 TNNI3P19429 210 aa3.8□□□□□ -1.8
CD44-226ENST00000527889 ITIH1P19827 911 aa3.8□□□□□ -1.8
CD44-226ENST00000527889 ATP6V1C1P21283 382 aa3.8□□□□□ -1.8
CD44-226ENST00000527889 PRKACGP22612 351 aa3.8□□□□□ -1.8
CD44-226ENST00000527889 S100A1P23297 94 aa3.8□□□□□ -1.8
CD44-226ENST00000527889 GABRA3P34903 492 aa3.8□□□□□ -1.8
CD44-226ENST00000527889 DCTP40126 519 aa3.8□□□□□ -1.8
CD44-226ENST00000527889 MAGEA2P43356 314 aa3.8□□□□□ -1.8
CD44-226ENST00000527889 HSPA13P48723 471 aa3.8□□□□□ -1.8
CD44-226ENST00000527889 STARP49675 285 aa3.8□□□□□ -1.8
CD44-226ENST00000527889 EMDP50402 254 aa3.8□□□□□ -1.8
CD44-226ENST00000527889 CRISP3P54108 245 aa3.8□□□□□ -1.8
CD44-226ENST00000527889 ATP12AP54707 1039 aa3.8□□□□□ -1.8
CD44-226ENST00000527889 SELENOWP63302 87 aa3.8□□□□□ -1.8
CD44-226ENST00000527889 HPCAP84074 193 aa3.8□□□□□ -1.8
CD44-226ENST00000527889 SPIBQ01892 262 aa3.8□□□□□ -1.8
CD44-226ENST00000527889 ZFP36L1Q07352 338 aaKnown RBP3.8□□□□□ -1.8
CD44-226ENST00000527889 FOXL1Q12952 345 aa3.8□□□□□ -1.8
CD44-226ENST00000527889 TRA2AQ13595 282 aaKnown RBP eCLIP3.8□□□□□ -1.8
CD44-226ENST00000527889 CBFBQ13951 182 aa3.8□□□□□ -1.8
CD44-226ENST00000527889 GANABQ14697 944 aaKnown RBP3.8□□□□□ -1.8
CD44-226ENST00000527889 AANATQ16613 207 aa3.8□□□□□ -1.8
CD44-226ENST00000527889 IQCCQ4KMZ1 466 aa3.8□□□□□ -1.8
CD44-226ENST00000527889 NKAIN1Q4KMZ8 207 aa3.8□□□□□ -1.8
CD44-226ENST00000527889 IFI44LQ53G44 452 aa3.8□□□□□ -1.8
CD44-226ENST00000527889 C6orf52Q5T4I8 152 aa3.8□□□□□ -1.8
CD44-226ENST00000527889 ATAD3BQ5T9A4 648 aa3.8□□□□□ -1.8
CD44-226ENST00000527889 WLSQ5T9L3 541 aa3.8□□□□□ -1.8
CD44-226ENST00000527889 FAM69BQ5VUD6 431 aa3.8□□□□□ -1.8
CD44-226ENST00000527889 MLIPQ5VWP3 458 aa3.8□□□□□ -1.8
CD44-226ENST00000527889 B3GNTL1Q67FW5 361 aaPredicted RBP3.8□□□□□ -1.8
CD44-226ENST00000527889 OR2T5Q6IEZ7 315 aa3.8□□□□□ -1.8
CD44-226ENST00000527889 ETFRF1Q6IPR1 90 aa3.8□□□□□ -1.8
CD44-226ENST00000527889 HEPHL1Q6MZM0 1159 aa3.8□□□□□ -1.8
CD44-226ENST00000527889 RHBDD2Q6NTF9 364 aa3.8□□□□□ -1.8
CD44-226ENST00000527889 MTFR2Q6P444 385 aa3.8□□□□□ -1.8
CD44-226ENST00000527889 ACSM6Q6P461 480 aa3.8□□□□□ -1.8
CD44-226ENST00000527889 NPSR1Q6W5P4 371 aa3.8□□□□□ -1.8
CD44-226ENST00000527889 DEF8Q6ZN54 512 aa3.8□□□□□ -1.8
CD44-226ENST00000527889 RBM44Q6ZP01 1051 aaKnown RBP3.8□□□□□ -1.8
CD44-226ENST00000527889 QSOX2Q6ZRP7 698 aa3.8□□□□□ -1.8
CD44-226ENST00000527889 TSEN54Q7Z6J9 526 aaKnown RBP3.8□□□□□ -1.8
CD44-226ENST00000527889 AKAP14Q86UN6 197 aa3.8□□□□□ -1.8
CD44-226ENST00000527889 CARM1Q86X55 608 aa3.8□□□□□ -1.8
CD44-226ENST00000527889 VRK2Q86Y07 508 aa3.8□□□□□ -1.8
CD44-226ENST00000527889 RBM45Q8IUH3 476 aaKnown RBP3.8□□□□□ -1.8
CD44-226ENST00000527889 LACC1Q8IV20 430 aa3.8□□□□□ -1.8
CD44-226ENST00000527889 SLC43A2Q8N370 569 aa3.8□□□□□ -1.8
CD44-226ENST00000527889 BMPERQ8N8U9 685 aa3.8□□□□□ -1.8
CD44-226ENST00000527889 POMGNT2Q8NAT1 580 aa3.8□□□□□ -1.8
CD44-226ENST00000527889 OR4N2Q8NGD1 307 aa3.8□□□□□ -1.8
CD44-226ENST00000527889 OR4D11Q8NGI4 311 aa3.8□□□□□ -1.8
Retrieved 100 of 20,778 RNA–protein pairs in 28.9 ms