RNA–Protein interactions for RNA: ENST00000520755.5

LSM1-203, Transcript of LSM1 homolog, mRNA degradation associated, humanhuman

TSL 1 (best) BASIC

Gene LSM1, Length 975 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1-203ENST00000520755 ZNF587Q96SQ5 575 aaPredicted RBP13.68□□□□□ -0.22
LSM1-203ENST00000520755 C9orf16Q9BUW7 83 aa13.68□□□□□ -0.22
LSM1-203ENST00000520755 OSBPL10Q9BXB5 764 aa13.68□□□□□ -0.22
LSM1-203ENST00000520755 USE1Q9NZ43 259 aa13.68□□□□□ -0.22
LSM1-203ENST00000520755 REV1Q9UBZ9 1251 aa13.68□□□□□ -0.22
LSM1-203ENST00000520755 ZNF229Q9UJW7 825 aa13.68□□□□□ -0.22
LSM1-203ENST00000520755 MGAT4BQ9UQ53 548 aa13.68□□□□□ -0.22
LSM1-203ENST00000520755 TRAPPC4Q9Y296 219 aa13.68□□□□□ -0.22
LSM1-203ENST00000520755 ZNF175Q9Y473 711 aa13.68□□□□□ -0.22
LSM1-203ENST00000520755 TRAV27A0A087WT01 109 aa13.67□□□□□ -0.22
LSM1-203ENST00000520755 IGHV3-15A0A0B4J1V0 119 aa13.67□□□□□ -0.22
LSM1-203ENST00000520755 MBD3L4A6NDZ8 208 aaPredicted RBP13.67□□□□□ -0.22
LSM1-203ENST00000520755 MBD3L3A6NE82 208 aaPredicted RBP13.67□□□□□ -0.22
LSM1-203ENST00000520755 MBD3L5A6NJ08 208 aaPredicted RBP13.67□□□□□ -0.22
LSM1-203ENST00000520755 SMAD9O15198 467 aaKnown RBP13.67□□□□□ -0.22
LSM1-203ENST00000520755 OR2T1O43869 369 aa13.67□□□□□ -0.22
LSM1-203ENST00000520755 TOXO94900 526 aa13.67□□□□□ -0.22
LSM1-203ENST00000520755 AKR7A3O95154 331 aa13.67□□□□□ -0.22
LSM1-203ENST00000520755 IL2RAP01589 272 aa13.67□□□□□ -0.22
LSM1-203ENST00000520755 SAGP10523 405 aaPredicted RBP13.67□□□□□ -0.22
LSM1-203ENST00000520755 ANXA8P13928 327 aa13.67□□□□□ -0.22
LSM1-203ENST00000520755 UQCRC1P31930 480 aa13.67□□□□□ -0.22
LSM1-203ENST00000520755 ARHGDIAP52565 204 aa13.67□□□□□ -0.22
LSM1-203ENST00000520755 CSNK2A1P68400 391 aaPredicted RBP13.67□□□□□ -0.22
LSM1-203ENST00000520755 H3F3AP84243 136 aa13.67□□□□□ -0.22
LSM1-203ENST00000520755 ZNF620Q6ZNG0 422 aa13.67□□□□□ -0.22
LSM1-203ENST00000520755 C10orf53Q8N6V4 93 aa13.67□□□□□ -0.22
LSM1-203ENST00000520755 MBD3L2Q8NHZ7 208 aaPredicted RBP13.67□□□□□ -0.22
LSM1-203ENST00000520755 ROBO4Q8WZ75 1007 aa13.67□□□□□ -0.22
LSM1-203ENST00000520755 WNT2BQ93097 391 aa13.67□□□□□ -0.22
LSM1-203ENST00000520755 EME1Q96AY2 570 aa13.67□□□□□ -0.22
LSM1-203ENST00000520755 TM9SF2Q99805 663 aa13.67□□□□□ -0.22
LSM1-203ENST00000520755 PLA2G12AQ9BZM1 189 aa13.67□□□□□ -0.22
LSM1-203ENST00000520755 MCCC2Q9HCC0 563 aa13.67□□□□□ -0.22
LSM1-203ENST00000520755 NANSQ9NR45 359 aa13.67□□□□□ -0.22
LSM1-203ENST00000520755 SIGLEC7Q9Y286 467 aa13.67□□□□□ -0.22
LSM1-203ENST00000520755 A0A0G2JNJ9 132 aa13.66□□□□□ -0.22
LSM1-203ENST00000520755 HTR3EA5X5Y0 456 aa13.66□□□□□ -0.22
LSM1-203ENST00000520755 UNC119BA6NIH7 251 aa13.66□□□□□ -0.22
LSM1-203ENST00000520755 DLGAP1O14490 977 aa13.66□□□□□ -0.22
LSM1-203ENST00000520755 AQP8O94778 261 aa13.66□□□□□ -0.22
LSM1-203ENST00000520755 HPRP00739 348 aa13.66□□□□□ -0.22
LSM1-203ENST00000520755 IGFBP1P08833 259 aaPredicted RBP13.66□□□□□ -0.22
LSM1-203ENST00000520755 FCGR2AP12318 317 aa13.66□□□□□ -0.22
LSM1-203ENST00000520755 ENPP1P22413 925 aa13.66□□□□□ -0.22
LSM1-203ENST00000520755 TIMP3P35625 211 aa13.66□□□□□ -0.22
LSM1-203ENST00000520755 IFNGR2P38484 337 aa13.66□□□□□ -0.22
LSM1-203ENST00000520755 SLC9A3P48764 834 aa13.66□□□□□ -0.22
LSM1-203ENST00000520755 ALDH3A2P51648 485 aa13.66□□□□□ -0.22
LSM1-203ENST00000520755 SMSP52788 366 aa13.66□□□□□ -0.22
LSM1-203ENST00000520755 RAC3P60763 192 aa13.66□□□□□ -0.22
LSM1-203ENST00000520755 SLC35A1P78382 337 aa13.66□□□□□ -0.22
LSM1-203ENST00000520755 RIPPLY2Q5TAB7 128 aa13.66□□□□□ -0.22
LSM1-203ENST00000520755 ABLIM2Q6H8Q1 611 aa13.66□□□□□ -0.22
LSM1-203ENST00000520755 CD300LDQ6UXZ3 194 aa13.66□□□□□ -0.22
LSM1-203ENST00000520755 THSD4Q6ZMP0 1018 aa13.66□□□□□ -0.22
LSM1-203ENST00000520755 ZBTB49Q6ZSB9 765 aa13.66□□□□□ -0.22
LSM1-203ENST00000520755 MAMDC2Q7Z304 686 aaPredicted RBP13.66□□□□□ -0.22
LSM1-203ENST00000520755 CCDC71Q8IV32 467 aaPredicted RBP13.66□□□□□ -0.22
LSM1-203ENST00000520755 GCNT2Q8N0V5 402 aa13.66□□□□□ -0.22
LSM1-203ENST00000520755 TMEM99Q8N816 258 aa13.66□□□□□ -0.22
LSM1-203ENST00000520755 SCAIQ8N9R8 606 aa13.66□□□□□ -0.22
LSM1-203ENST00000520755 ATG16L2Q8NAA4 619 aa13.66□□□□□ -0.22
LSM1-203ENST00000520755 NAXEQ8NCW5 288 aa13.66□□□□□ -0.22
LSM1-203ENST00000520755 OR8D4Q8NGM9 314 aa13.66□□□□□ -0.22
LSM1-203ENST00000520755 OR5J2Q8NH18 312 aa13.66□□□□□ -0.22
LSM1-203ENST00000520755 MOSPD2Q8NHP6 518 aa13.66□□□□□ -0.22
LSM1-203ENST00000520755 SDCCAG3Q96C92 435 aa13.66□□□□□ -0.22
LSM1-203ENST00000520755 ZHX1-C8orf76Q96EF9 292 aa13.66□□□□□ -0.22
LSM1-203ENST00000520755 RBM4BQ9BQ04 359 aaKnown RBP13.66□□□□□ -0.22
LSM1-203ENST00000520755 RBM4Q9BWF3 364 aaKnown RBP13.66□□□□□ -0.22
LSM1-203ENST00000520755 TAPBPLQ9BX59 468 aa13.66□□□□□ -0.22
LSM1-203ENST00000520755 CHST11Q9NPF2 352 aa13.66□□□□□ -0.22
LSM1-203ENST00000520755 KRCC1Q9NPI7 259 aaPredicted RBP13.66□□□□□ -0.22
LSM1-203ENST00000520755 MRPL39Q9NYK5 338 aaKnown RBP13.66□□□□□ -0.22
LSM1-203ENST00000520755 COQ3Q9NZJ6 369 aa13.66□□□□□ -0.22
LSM1-203ENST00000520755 KIF17Q9P2E2 1029 aa13.66□□□□□ -0.22
LSM1-203ENST00000520755 B3GAT1Q9P2W7 334 aa13.66□□□□□ -0.22
LSM1-203ENST00000520755 Q9UFV3 132 aa13.66□□□□□ -0.22
LSM1-203ENST00000520755 RNF6Q9Y252 685 aa13.66□□□□□ -0.22
LSM1-203ENST00000520755 HIF3AQ9Y2N7 669 aa13.66□□□□□ -0.22
LSM1-203ENST00000520755 CORINQ9Y5Q5 1042 aa13.66□□□□□ -0.22
LSM1-203ENST00000520755 AQP7P3A6NL99 342 aa13.65□□□□□ -0.22
LSM1-203ENST00000520755 DNPH1O43598 174 aa13.65□□□□□ -0.22
LSM1-203ENST00000520755 PTP4A3O75365 173 aa13.65□□□□□ -0.22
LSM1-203ENST00000520755 SOX14O95416 240 aa13.65□□□□□ -0.22
LSM1-203ENST00000520755 RNF224P0DH78 156 aa13.65□□□□□ -0.22
LSM1-203ENST00000520755 TMIGD3P0DMS9 266 aaPredicted RBP13.65□□□□□ -0.22
LSM1-203ENST00000520755 IGFBP5P24593 272 aa13.65□□□□□ -0.22
LSM1-203ENST00000520755 CEACAM8P31997 349 aaPredicted RBP13.65□□□□□ -0.22
LSM1-203ENST00000520755 PTDSS1P48651 473 aaKnown RBP13.65□□□□□ -0.22
LSM1-203ENST00000520755 AGFG1P52594 562 aaKnown RBP13.65□□□□□ -0.22
LSM1-203ENST00000520755 RPL18Q07020 188 aaKnown RBP13.65□□□□□ -0.22
LSM1-203ENST00000520755 MFSD13AQ14CX5 517 aa13.65□□□□□ -0.22
LSM1-203ENST00000520755 PAQR6Q6TCH4 344 aa13.65□□□□□ -0.22
LSM1-203ENST00000520755 RASSF6Q6ZTQ3 369 aa13.65□□□□□ -0.22
LSM1-203ENST00000520755 FCRLAQ7L513 359 aa13.65□□□□□ -0.22
LSM1-203ENST00000520755 NANOGNBQ7Z5D8 188 aa13.65□□□□□ -0.22
LSM1-203ENST00000520755 GALNT5Q7Z7M9 940 aa13.65□□□□□ -0.22
LSM1-203ENST00000520755 MRGPRGQ86SM5 289 aa13.65□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 21.5 ms