RNA–Protein interactions for RNA: ENST00000508501.5

LIMCH1-208, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 5,054 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-208ENST00000508501 ABHD6Q9BV23 337 aa10.47□□□□□ -0.73
LIMCH1-208ENST00000508501 GPR174Q9BXC1 333 aa10.47□□□□□ -0.73
LIMCH1-208ENST00000508501 WWTR1Q9GZV5 400 aa10.47□□□□□ -0.73
LIMCH1-208ENST00000508501 NAA50Q9GZZ1 169 aaKnown RBP10.47□□□□□ -0.73
LIMCH1-208ENST00000508501 NKX2-4Q9H2Z4 354 aa10.47□□□□□ -0.73
LIMCH1-208ENST00000508501 GOLT1BQ9Y3E0 138 aa10.47□□□□□ -0.73
LIMCH1-208ENST00000508501 KDM6BO15054 1643 aa10.47□□□□□ -0.73
LIMCH1-208ENST00000508501 SYT5O00445 386 aa10.47□□□□□ -0.73
LIMCH1-208ENST00000508501 B4GAT1O43505 415 aa10.47□□□□□ -0.73
LIMCH1-208ENST00000508501 SUSD5O60279 629 aa10.47□□□□□ -0.73
LIMCH1-208ENST00000508501 ADAM11O75078 769 aa10.47□□□□□ -0.73
LIMCH1-208ENST00000508501 GCH1P30793 250 aa10.47□□□□□ -0.73
LIMCH1-208ENST00000508501 ZNF280AP59817 542 aaPredicted RBP10.47□□□□□ -0.73
LIMCH1-208ENST00000508501 KREMEN2Q8NCW0 462 aa10.47□□□□□ -0.73
LIMCH1-208ENST00000508501 F2RL3Q96RI0 385 aa10.47□□□□□ -0.73
LIMCH1-208ENST00000508501 CNIH4Q9P003 139 aa10.47□□□□□ -0.73
LIMCH1-208ENST00000508501 C7orf72A4D263 438 aa10.47□□□□□ -0.73
LIMCH1-208ENST00000508501 MTX2O75431 263 aa10.47□□□□□ -0.73
LIMCH1-208ENST00000508501 ABHD16AO95870 558 aa10.47□□□□□ -0.73
LIMCH1-208ENST00000508501 C8AP07357 584 aa10.47□□□□□ -0.73
LIMCH1-208ENST00000508501 GABRR1P24046 479 aa10.47□□□□□ -0.73
LIMCH1-208ENST00000508501 CSN1S1P47710 185 aa10.47□□□□□ -0.73
LIMCH1-208ENST00000508501 DUSP3P51452 185 aaPredicted RBP10.47□□□□□ -0.73
LIMCH1-208ENST00000508501 MAP2K6P52564 334 aa10.47□□□□□ -0.73
LIMCH1-208ENST00000508501 GP2P55259 537 aaKnown RBP10.47□□□□□ -0.73
LIMCH1-208ENST00000508501 TGFBR3Q03167 851 aa10.47□□□□□ -0.73
LIMCH1-208ENST00000508501 ZNF805Q5CZA5 627 aa10.47□□□□□ -0.73
LIMCH1-208ENST00000508501 IGSF11Q5DX21 431 aa10.47□□□□□ -0.73
LIMCH1-208ENST00000508501 OR52B6Q8NGF0 335 aa10.47□□□□□ -0.73
LIMCH1-208ENST00000508501 CERKQ8TCT0 537 aa10.47□□□□□ -0.73
LIMCH1-208ENST00000508501 SLC2A9Q9NRM0 540 aa10.47□□□□□ -0.73
LIMCH1-208ENST00000508501 IGSF5Q9NSI5 407 aa10.47□□□□□ -0.73
LIMCH1-208ENST00000508501 SSUH2Q9Y2M2 353 aa10.47□□□□□ -0.73
LIMCH1-208ENST00000508501 HSPB2A8KAH6 182 aa10.46□□□□□ -0.73
LIMCH1-208ENST00000508501 DCTN6O00399 190 aa10.46□□□□□ -0.73
LIMCH1-208ENST00000508501 DUSP11O75319 330 aaKnown RBP10.46□□□□□ -0.73
LIMCH1-208ENST00000508501 ADH5P11766 374 aa10.46□□□□□ -0.73
LIMCH1-208ENST00000508501 SNRPBP14678 240 aaKnown RBP10.46□□□□□ -0.73
LIMCH1-208ENST00000508501 SIM1P81133 766 aaPredicted RBP10.46□□□□□ -0.73
LIMCH1-208ENST00000508501 HSPB2Q16082 182 aa10.46□□□□□ -0.73
LIMCH1-208ENST00000508501 CPEB4Q17RY0 729 aaKnown RBP eCLIP10.46□□□□□ -0.73
LIMCH1-208ENST00000508501 CELF5Q8N6W0 485 aaKnown RBP10.46□□□□□ -0.73
LIMCH1-208ENST00000508501 CSNK1A1LQ8N752 337 aa10.46□□□□□ -0.73
LIMCH1-208ENST00000508501 SORT1Q99523 831 aa10.46□□□□□ -0.73
LIMCH1-208ENST00000508501 FAM173AQ9BQD7 235 aa10.46□□□□□ -0.73
LIMCH1-208ENST00000508501 SOX7Q9BT81 388 aa10.46□□□□□ -0.73
LIMCH1-208ENST00000508501 CLMPQ9H6B4 373 aa10.46□□□□□ -0.73
LIMCH1-208ENST00000508501 RALYQ9UKM9 306 aaKnown RBP10.46□□□□□ -0.73
LIMCH1-208ENST00000508501 ENTPD2Q9Y5L3 495 aa10.46□□□□□ -0.73
LIMCH1-208ENST00000508501 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP10.46□□□□□ -0.73
LIMCH1-208ENST00000508501 PTPRMP28827 1452 aa10.46□□□□□ -0.73
LIMCH1-208ENST00000508501 SCGB1C2P0DMR2 95 aa10.46□□□□□ -0.73
LIMCH1-208ENST00000508501 FBLP22087 321 aaKnown RBP10.46□□□□□ -0.73
LIMCH1-208ENST00000508501 RAG2P55895 527 aa10.46□□□□□ -0.73
LIMCH1-208ENST00000508501 PRRT3Q5FWE3 981 aa10.46□□□□□ -0.73
LIMCH1-208ENST00000508501 CARD17Q5XLA6 110 aa10.46□□□□□ -0.73
LIMCH1-208ENST00000508501 PODNL1Q6PEZ8 512 aa10.46□□□□□ -0.73
LIMCH1-208ENST00000508501 Q8N9G6 341 aaPredicted RBP10.46□□□□□ -0.73
LIMCH1-208ENST00000508501 CYB561A3Q8NBI2 242 aa10.46□□□□□ -0.73
LIMCH1-208ENST00000508501 SGPP1Q9BX95 441 aa10.46□□□□□ -0.73
LIMCH1-208ENST00000508501 HRASLS2Q9NWW9 162 aa10.46□□□□□ -0.73
LIMCH1-208ENST00000508501 DNAJB11Q9UBS4 358 aa10.46□□□□□ -0.73
LIMCH1-208ENST00000508501 SLC23A2Q9UGH3 650 aa10.46□□□□□ -0.73
LIMCH1-208ENST00000508501 GPR31O00270 319 aa10.46□□□□□ -0.74
LIMCH1-208ENST00000508501 CCL16O15467 120 aa10.46□□□□□ -0.74
LIMCH1-208ENST00000508501 XRCC3O43542 346 aa10.46□□□□□ -0.74
LIMCH1-208ENST00000508501 LIPCP11150 499 aa10.46□□□□□ -0.74
LIMCH1-208ENST00000508501 SLC2A1P11166 492 aa10.46□□□□□ -0.74
LIMCH1-208ENST00000508501 GLB1P16278 677 aa10.46□□□□□ -0.74
LIMCH1-208ENST00000508501 HOXA1P49639 335 aaPredicted RBP10.46□□□□□ -0.74
LIMCH1-208ENST00000508501 OR10A3P58181 314 aa10.46□□□□□ -0.74
LIMCH1-208ENST00000508501 OR4D1Q15615 310 aa10.46□□□□□ -0.74
LIMCH1-208ENST00000508501 PRAMEF8Q5VWM4 474 aa10.46□□□□□ -0.74
LIMCH1-208ENST00000508501 PRAMEF7Q5VXH5 474 aa10.46□□□□□ -0.74
LIMCH1-208ENST00000508501 WBP2NLQ6ICG8 309 aa10.46□□□□□ -0.74
LIMCH1-208ENST00000508501 TAS1R3Q7RTX0 852 aa10.46□□□□□ -0.74
LIMCH1-208ENST00000508501 LSRQ86X29 649 aaPredicted RBP10.46□□□□□ -0.74
LIMCH1-208ENST00000508501 PHYHIPLQ96FC7 376 aa10.46□□□□□ -0.74
LIMCH1-208ENST00000508501 SLC6A18Q96N87 628 aa10.46□□□□□ -0.74
LIMCH1-208ENST00000508501 CIB3Q96Q77 187 aaPredicted RBP10.46□□□□□ -0.74
LIMCH1-208ENST00000508501 IKZF4Q9H2S9 585 aa10.46□□□□□ -0.74
LIMCH1-208ENST00000508501 PLK3Q9H4B4 646 aa10.46□□□□□ -0.74
LIMCH1-208ENST00000508501 ELOVL3Q9HB03 270 aa10.46□□□□□ -0.74
LIMCH1-208ENST00000508501 B4DGG1 531 aa10.46□□□□□ -0.74
LIMCH1-208ENST00000508501 BCL2L11O43521 198 aa10.46□□□□□ -0.74
LIMCH1-208ENST00000508501 LILRB3O75022 631 aa10.46□□□□□ -0.74
LIMCH1-208ENST00000508501 OMGP23515 440 aa10.46□□□□□ -0.74
LIMCH1-208ENST00000508501 WASP42768 502 aa10.46□□□□□ -0.74
LIMCH1-208ENST00000508501 DCAF7P61962 342 aa10.46□□□□□ -0.74
LIMCH1-208ENST00000508501 ELOCQ15369 112 aa10.46□□□□□ -0.74
LIMCH1-208ENST00000508501 LRRC73Q5JTD7 316 aa10.46□□□□□ -0.74
LIMCH1-208ENST00000508501 RAET1LQ5VY80 246 aa10.46□□□□□ -0.74
LIMCH1-208ENST00000508501 DHRS4L2Q6PKH6 230 aa10.46□□□□□ -0.74
LIMCH1-208ENST00000508501 LCTLQ6UWM7 567 aa10.46□□□□□ -0.74
LIMCH1-208ENST00000508501 B3GNT9Q6UX72 402 aa10.46□□□□□ -0.74
LIMCH1-208ENST00000508501 Q6ZTK2 550 aa10.46□□□□□ -0.74
LIMCH1-208ENST00000508501 KLHDC8AQ8IYD2 350 aa10.46□□□□□ -0.74
LIMCH1-208ENST00000508501 SMOQ99835 787 aa10.46□□□□□ -0.74
LIMCH1-208ENST00000508501 SMIM7Q9BQ49 75 aa10.46□□□□□ -0.74
LIMCH1-208ENST00000508501 CLTCL1P53675 1640 aa10.46□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 41.9 ms