RNA–Protein interactions for RNA: ENST00000506042.5

SQSTM1-210, Transcript of sequestosome 1, humanhuman

TSL 2

Gene SQSTM1, Length 921 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-210ENST00000506042 ANKS4BQ8N8V4 417 aa18.29■□□□□ 0.52
SQSTM1-210ENST00000506042 PNPT1Q8TCS8 783 aaKnown RBP18.29■□□□□ 0.52
SQSTM1-210ENST00000506042 SPATA9Q9BWV2 254 aa18.29■□□□□ 0.52
SQSTM1-210ENST00000506042 TMEFF2Q9UIK5 374 aaPredicted RBP18.29■□□□□ 0.52
SQSTM1-210ENST00000506042 HAO1Q9UJM8 370 aa18.29■□□□□ 0.52
SQSTM1-210ENST00000506042 ZNF443Q9Y2A4 671 aaPredicted RBP18.29■□□□□ 0.52
SQSTM1-210ENST00000506042 ALPK2Q86TB3 2170 aa18.28■□□□□ 0.52
SQSTM1-210ENST00000506042 IGHV4-61A0A0C4DH41 118 aa18.28■□□□□ 0.52
SQSTM1-210ENST00000506042 BCHEP06276 602 aa18.28■□□□□ 0.52
SQSTM1-210ENST00000506042 VIMP08670 466 aaKnown RBP18.28■□□□□ 0.52
SQSTM1-210ENST00000506042 GKN3PP0CG01 181 aa18.28■□□□□ 0.52
SQSTM1-210ENST00000506042 NME5P56597 212 aa18.28■□□□□ 0.52
SQSTM1-210ENST00000506042 MFSD13AQ14CX5 517 aa18.28■□□□□ 0.52
SQSTM1-210ENST00000506042 ZNF836Q6ZNA1 936 aa18.28■□□□□ 0.52
SQSTM1-210ENST00000506042 NET1Q7Z628 596 aaPredicted RBP18.28■□□□□ 0.52
SQSTM1-210ENST00000506042 SLC25A36Q96CQ1 311 aa18.28■□□□□ 0.52
SQSTM1-210ENST00000506042 KCNK9Q9NPC2 374 aa18.28■□□□□ 0.52
SQSTM1-210ENST00000506042 RLIMQ9NVW2 624 aa18.28■□□□□ 0.52
SQSTM1-210ENST00000506042 FBXL3Q9UKT7 428 aa18.28■□□□□ 0.52
SQSTM1-210ENST00000506042 A0A096LPE4 126 aa18.27■□□□□ 0.52
SQSTM1-210ENST00000506042 A0A1W2PPZ6 126 aa18.27■□□□□ 0.52
SQSTM1-210ENST00000506042 PRAMEF27A3QJZ7 478 aa18.27■□□□□ 0.52
SQSTM1-210ENST00000506042 C5orf58C9J3I9 102 aa18.27■□□□□ 0.52
SQSTM1-210ENST00000506042 RPL36A-HNRNPH2H7BZ11 118 aa18.27■□□□□ 0.52
SQSTM1-210ENST00000506042 AIM2O14862 343 aa18.27■□□□□ 0.52
SQSTM1-210ENST00000506042 STAMBPO95630 424 aa18.27■□□□□ 0.52
SQSTM1-210ENST00000506042 IGKV3-15P01624 115 aa18.27■□□□□ 0.52
SQSTM1-210ENST00000506042 IGLV1-44P01699 117 aa18.27■□□□□ 0.52
SQSTM1-210ENST00000506042 GSNP06396 782 aa18.27■□□□□ 0.52
SQSTM1-210ENST00000506042 IFNGR1P15260 489 aa18.27■□□□□ 0.52
SQSTM1-210ENST00000506042 CLDN17P56750 224 aa18.27■□□□□ 0.52
SQSTM1-210ENST00000506042 NCALDP61601 193 aa18.27■□□□□ 0.52
SQSTM1-210ENST00000506042 UFM1P61960 85 aa18.27■□□□□ 0.52
SQSTM1-210ENST00000506042 RPS23P62266 143 aaKnown RBP18.27■□□□□ 0.52
SQSTM1-210ENST00000506042 HHATQ5VTY9 493 aa18.27■□□□□ 0.52
SQSTM1-210ENST00000506042 ATG16L1Q676U5 607 aa18.27■□□□□ 0.52
SQSTM1-210ENST00000506042 MSANTD1Q6ZTZ1 278 aa18.27■□□□□ 0.52
SQSTM1-210ENST00000506042 IL17RELQ6ZVW7 336 aa18.27■□□□□ 0.52
SQSTM1-210ENST00000506042 ZNF786Q8N393 782 aa18.27■□□□□ 0.52
SQSTM1-210ENST00000506042 MGARPQ8TDB4 240 aa18.27■□□□□ 0.52
SQSTM1-210ENST00000506042 UBASH3BQ8TF42 649 aa18.27■□□□□ 0.52
SQSTM1-210ENST00000506042 SLC38A4Q969I6 547 aa18.27■□□□□ 0.52
SQSTM1-210ENST00000506042 ITCHQ96J02 903 aa18.27■□□□□ 0.52
SQSTM1-210ENST00000506042 OXGR1Q96P68 337 aa18.27■□□□□ 0.52
SQSTM1-210ENST00000506042 PAIP2Q9BPZ3 127 aaKnown RBP18.27■□□□□ 0.52
SQSTM1-210ENST00000506042 CENPHQ9H3R5 247 aa18.27■□□□□ 0.52
SQSTM1-210ENST00000506042 MS4A5Q9H3V2 200 aa18.27■□□□□ 0.52
SQSTM1-210ENST00000506042 CMAHPQ9Y471 501 aa18.27■□□□□ 0.52
SQSTM1-210ENST00000506042 DSPPQ9NZW4 1301 aa18.26■□□□□ 0.51
SQSTM1-210ENST00000506042 SLC35F4A4IF30 521 aa18.26■□□□□ 0.51
SQSTM1-210ENST00000506042 SLC22A3O75751 556 aa18.26■□□□□ 0.51
SQSTM1-210ENST00000506042 ZCCHC18P0CG32 403 aa18.26■□□□□ 0.51
SQSTM1-210ENST00000506042 PNMTP11086 282 aa18.26■□□□□ 0.51
SQSTM1-210ENST00000506042 NPRL3Q12980 569 aa18.26■□□□□ 0.51
SQSTM1-210ENST00000506042 DAG1Q14118 895 aa18.26■□□□□ 0.51
SQSTM1-210ENST00000506042 ADRM1Q16186 407 aa18.26■□□□□ 0.51
SQSTM1-210ENST00000506042 ZNF311Q5JNZ3 666 aa18.26■□□□□ 0.51
SQSTM1-210ENST00000506042 NXNQ6DKJ4 435 aa18.26■□□□□ 0.51
SQSTM1-210ENST00000506042 VRK2Q86Y07 508 aa18.26■□□□□ 0.51
SQSTM1-210ENST00000506042 CKAP2Q8WWK9 683 aa18.26■□□□□ 0.51
SQSTM1-210ENST00000506042 C12orf10Q9HB07 376 aa18.26■□□□□ 0.51
SQSTM1-210ENST00000506042 A0A0A6YYJ9 748 aa18.25■□□□□ 0.51
SQSTM1-210ENST00000506042 HDAC3O15379 428 aa18.25■□□□□ 0.51
SQSTM1-210ENST00000506042 TACSTD2P09758 323 aa18.25■□□□□ 0.51
SQSTM1-210ENST00000506042 CREB1P16220 341 aa18.25■□□□□ 0.51
SQSTM1-210ENST00000506042 ACAA2P42765 397 aaKnown RBP18.25■□□□□ 0.51
SQSTM1-210ENST00000506042 GALK2Q01415 458 aa18.25■□□□□ 0.51
SQSTM1-210ENST00000506042 POU3F1Q03052 451 aaPredicted RBP18.25■□□□□ 0.51
SQSTM1-210ENST00000506042 PLAURQ03405 335 aa18.25■□□□□ 0.51
SQSTM1-210ENST00000506042 BNIP2Q12982 314 aa18.25■□□□□ 0.51
SQSTM1-210ENST00000506042 TRMT5Q32P41 509 aaKnown RBP18.25■□□□□ 0.51
SQSTM1-210ENST00000506042 FAM69AQ5T7M9 428 aa18.25■□□□□ 0.51
SQSTM1-210ENST00000506042 GLCCI1Q86VQ1 547 aa18.25■□□□□ 0.51
SQSTM1-210ENST00000506042 KRT73Q86Y46 540 aa18.25■□□□□ 0.51
SQSTM1-210ENST00000506042 DNAJA4Q8WW22 397 aaPredicted RBP18.25■□□□□ 0.51
SQSTM1-210ENST00000506042 EPYCQ99645 322 aa18.25■□□□□ 0.51
SQSTM1-210ENST00000506042 SPATA5L1Q9BVQ7 753 aa18.25■□□□□ 0.51
SQSTM1-210ENST00000506042 DENND2DQ9H6A0 471 aaPredicted RBP18.25■□□□□ 0.51
SQSTM1-210ENST00000506042 TPT1P8Q9HAU6 139 aa18.25■□□□□ 0.51
SQSTM1-210ENST00000506042 CRLF2Q9HC73 371 aa18.25■□□□□ 0.51
SQSTM1-210ENST00000506042 GPR160Q9UJ42 338 aa18.25■□□□□ 0.51
SQSTM1-210ENST00000506042 METRNQ9UJH8 293 aa18.25■□□□□ 0.51
SQSTM1-210ENST00000506042 ARFGEF3Q5TH69 2177 aa18.25■□□□□ 0.51
SQSTM1-210ENST00000506042 M0R233 179 aa18.24■□□□□ 0.51
SQSTM1-210ENST00000506042 UPK3AO75631 287 aa18.24■□□□□ 0.51
SQSTM1-210ENST00000506042 NQO1P15559 274 aaKnown RBP18.24■□□□□ 0.51
SQSTM1-210ENST00000506042 BGNP21810 368 aa18.24■□□□□ 0.51
SQSTM1-210ENST00000506042 RPS5P46782 204 aaKnown RBP18.24■□□□□ 0.51
SQSTM1-210ENST00000506042 EVX1P49640 407 aa18.24■□□□□ 0.51
SQSTM1-210ENST00000506042 VSNL1P62760 191 aa18.24■□□□□ 0.51
SQSTM1-210ENST00000506042 ARF1P84077 181 aaKnown RBP18.24■□□□□ 0.51
SQSTM1-210ENST00000506042 SNTB2Q13425 540 aaKnown RBP18.24■□□□□ 0.51
SQSTM1-210ENST00000506042 COX20Q5RI15 118 aa18.24■□□□□ 0.51
SQSTM1-210ENST00000506042 C6orf10Q5SRN2 563 aa18.24■□□□□ 0.51
SQSTM1-210ENST00000506042 SHQ1Q6PI26 577 aaKnown RBP18.24■□□□□ 0.51
SQSTM1-210ENST00000506042 EPHX4Q8IUS5 362 aa18.24■□□□□ 0.51
SQSTM1-210ENST00000506042 SVOPLQ8N434 492 aa18.24■□□□□ 0.51
SQSTM1-210ENST00000506042 BBS10Q8TAM1 723 aa18.24■□□□□ 0.51
SQSTM1-210ENST00000506042 SLC38A5Q8WUX1 472 aa18.24■□□□□ 0.51
SQSTM1-210ENST00000506042 SORT1Q99523 831 aa18.24■□□□□ 0.51
Retrieved 100 of 20,778 RNA–protein pairs in 32.2 ms