RNA–Protein interactions for RNA: ENST00000494566.5

CCDC88B-210, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 2,909 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-210ENST00000494566 TSPAN5P62079 268 aa15.12■□□□□ 0.01
CCDC88B-210ENST00000494566 ACSM1Q08AH1 577 aa15.12■□□□□ 0.01
CCDC88B-210ENST00000494566 CT45A2Q5DJT8 189 aa15.12■□□□□ 0.01
CCDC88B-210ENST00000494566 ZCCHC12Q6PEW1 402 aa15.12■□□□□ 0.01
CCDC88B-210ENST00000494566 DGAT2Q96PD7 388 aa15.12■□□□□ 0.01
CCDC88B-210ENST00000494566 RPS6KB2Q9UBS0 482 aa15.12■□□□□ 0.01
CCDC88B-210ENST00000494566 CLDN16Q9Y5I7 305 aa15.12■□□□□ 0.01
CCDC88B-210ENST00000494566 LOC105371267A0A1B0GV96 52 aa15.11■□□□□ 0.01
CCDC88B-210ENST00000494566 DOK2O60496 412 aa15.11■□□□□ 0.01
CCDC88B-210ENST00000494566 RNH1P13489 461 aaKnown RBP15.11■□□□□ 0.01
CCDC88B-210ENST00000494566 PRKACBP22694 351 aa15.11■□□□□ 0.01
CCDC88B-210ENST00000494566 SLC2A5P22732 501 aa15.11■□□□□ 0.01
CCDC88B-210ENST00000494566 ZP1P60852 638 aa15.11■□□□□ 0.01
CCDC88B-210ENST00000494566 SNTA1Q13424 505 aa15.11■□□□□ 0.01
CCDC88B-210ENST00000494566 SFRP5Q5T4F7 317 aa15.11■□□□□ 0.01
CCDC88B-210ENST00000494566 METAP1DQ6UB28 335 aaPredicted RBP15.11■□□□□ 0.01
CCDC88B-210ENST00000494566 NHLRC1Q6VVB1 395 aa15.11■□□□□ 0.01
CCDC88B-210ENST00000494566 LMX1AQ8TE12 382 aa15.11■□□□□ 0.01
CCDC88B-210ENST00000494566 RASD2Q96D21 266 aa15.11■□□□□ 0.01
CCDC88B-210ENST00000494566 PGLYRP3Q96LB9 341 aa15.11■□□□□ 0.01
CCDC88B-210ENST00000494566 NMNAT3Q96T66 252 aa15.11■□□□□ 0.01
CCDC88B-210ENST00000494566 MS4A7Q9GZW8 240 aaPredicted RBP15.11■□□□□ 0.01
CCDC88B-210ENST00000494566 KCNK15Q9H427 330 aa15.11■□□□□ 0.01
CCDC88B-210ENST00000494566 WDFY4Q6ZS81 3184 aa15.11■□□□□ 0.01
CCDC88B-210ENST00000494566 EML5Q05BV3 1969 aa15.11■□□□□ 0.01
CCDC88B-210ENST00000494566 CHURC1-FNTBB4DL54 471 aa15.11■□□□□ 0.01
CCDC88B-210ENST00000494566 H7C1C5 153 aa15.11■□□□□ 0.01
CCDC88B-210ENST00000494566 OIP5O43482 229 aa15.11■□□□□ 0.01
CCDC88B-210ENST00000494566 FMO6PO60774 539 aa15.11■□□□□ 0.01
CCDC88B-210ENST00000494566 CSTAP01040 98 aa15.11■□□□□ 0.01
CCDC88B-210ENST00000494566 RAF1P04049 648 aa15.11■□□□□ 0.01
CCDC88B-210ENST00000494566 FBXO45P0C2W1 286 aa15.11■□□□□ 0.01
CCDC88B-210ENST00000494566 TMIGD3P0DMS9 266 aaPredicted RBP15.11■□□□□ 0.01
CCDC88B-210ENST00000494566 ATF4P18848 351 aaPredicted RBP15.11■□□□□ 0.01
CCDC88B-210ENST00000494566 HK1P19367 917 aa15.11■□□□□ 0.01
CCDC88B-210ENST00000494566 ADH7P40394 386 aa15.11■□□□□ 0.01
CCDC88B-210ENST00000494566 RAD52P43351 418 aa15.11■□□□□ 0.01
CCDC88B-210ENST00000494566 AP2S1P53680 142 aaPredicted RBP15.11■□□□□ 0.01
CCDC88B-210ENST00000494566 LCN6P62502 163 aa15.11■□□□□ 0.01
CCDC88B-210ENST00000494566 PLA2G7Q13093 441 aa15.11■□□□□ 0.01
CCDC88B-210ENST00000494566 MELKQ14680 651 aa15.11■□□□□ 0.01
CCDC88B-210ENST00000494566 POMZP3Q6PJE2 187 aa15.11■□□□□ 0.01
CCDC88B-210ENST00000494566 FAM198BQ6UWH4 519 aa15.11■□□□□ 0.01
CCDC88B-210ENST00000494566 FCRLAQ7L513 359 aa15.11■□□□□ 0.01
CCDC88B-210ENST00000494566 CMTM4Q8IZR5 234 aa15.11■□□□□ 0.01
CCDC88B-210ENST00000494566 OR52I2Q8NH67 350 aa15.11■□□□□ 0.01
CCDC88B-210ENST00000494566 C8orf33Q9H7E9 229 aaPredicted RBP15.11■□□□□ 0.01
CCDC88B-210ENST00000494566 ZNF69Q9UC07 566 aa15.11■□□□□ 0.01
CCDC88B-210ENST00000494566 KHDRBS3O75525 346 aaKnown RBP15.1■□□□□ 0.01
CCDC88B-210ENST00000494566 AK1P00568 194 aa15.1■□□□□ 0.01
CCDC88B-210ENST00000494566 F8A1P23610 371 aa15.1■□□□□ 0.01
CCDC88B-210ENST00000494566 RTL4Q6ZR62 310 aa15.1■□□□□ 0.01
CCDC88B-210ENST00000494566 GLRX5Q86SX6 157 aa15.1■□□□□ 0.01
CCDC88B-210ENST00000494566 PRR22Q8IZ63 422 aa15.1■□□□□ 0.01
CCDC88B-210ENST00000494566 BCORP1Q8N888 145 aa15.1■□□□□ 0.01
CCDC88B-210ENST00000494566 GALNT6Q8NCL4 622 aa15.1■□□□□ 0.01
CCDC88B-210ENST00000494566 ZNF524Q96C55 264 aa15.1■□□□□ 0.01
CCDC88B-210ENST00000494566 SCMH1Q96GD3 660 aa15.1■□□□□ 0.01
CCDC88B-210ENST00000494566 NOX4Q9NPH5 578 aa15.1■□□□□ 0.01
CCDC88B-210ENST00000494566 CA10Q9NS85 328 aa15.1■□□□□ 0.01
CCDC88B-210ENST00000494566 ING1Q9UK53 422 aaPredicted RBP15.1■□□□□ 0.01
CCDC88B-210ENST00000494566 COL4A2P08572 1712 aa15.1■□□□□ 0.01
CCDC88B-210ENST00000494566 IGHV5-51A0A0C4DH38 117 aa15.1■□□□□ 0.01
CCDC88B-210ENST00000494566 FAM221BA6H8Z2 402 aa15.1■□□□□ 0.01
CCDC88B-210ENST00000494566 LGALS8O00214 317 aa15.1■□□□□ 0.01
CCDC88B-210ENST00000494566 RBMS1P29558 406 aaKnown RBP15.1■□□□□ 0.01
CCDC88B-210ENST00000494566 ERVK-25P63136 954 aa15.1■□□□□ 0.01
CCDC88B-210ENST00000494566 GSG1Q2KHT4 349 aa15.1■□□□□ 0.01
CCDC88B-210ENST00000494566 PRTGQ2VWP7 1150 aa15.1■□□□□ 0.01
CCDC88B-210ENST00000494566 DEFB133Q30KQ1 61 aa15.1■□□□□ 0.01
CCDC88B-210ENST00000494566 ZDHHC19Q8WVZ1 309 aaPredicted RBP15.1■□□□□ 0.01
CCDC88B-210ENST00000494566 LMF2Q9BU23 707 aaKnown RBP15.1■□□□□ 0.01
CCDC88B-210ENST00000494566 CLEC4MQ9H2X3 399 aaPredicted RBP15.1■□□□□ 0.01
CCDC88B-210ENST00000494566 COPS3Q9UNS2 423 aa15.1■□□□□ 0.01
CCDC88B-210ENST00000494566 OR5K4A6NMS3 321 aa15.1■□□□□ 0.01
CCDC88B-210ENST00000494566 FLRT2O43155 660 aa15.1■□□□□ 0.01
CCDC88B-210ENST00000494566 GPANK1O95872 356 aa15.1■□□□□ 0.01
CCDC88B-210ENST00000494566 SLC6A6P31641 620 aa15.1■□□□□ 0.01
CCDC88B-210ENST00000494566 BLVRAP53004 296 aa15.1■□□□□ 0.01
CCDC88B-210ENST00000494566 MANEAQ5SRI9 462 aa15.1■□□□□ 0.01
CCDC88B-210ENST00000494566 YOD1Q5VVQ6 348 aaPredicted RBP15.1■□□□□ 0.01
CCDC88B-210ENST00000494566 PYHIN1Q6K0P9 492 aa15.1■□□□□ 0.01
CCDC88B-210ENST00000494566 PRSS58Q8IYP2 241 aa15.1■□□□□ 0.01
CCDC88B-210ENST00000494566 ZNF511Q8NB15 262 aa15.1■□□□□ 0.01
CCDC88B-210ENST00000494566 PELI1Q96FA3 418 aa15.1■□□□□ 0.01
CCDC88B-210ENST00000494566 OR10A5Q9H207 317 aa15.1■□□□□ 0.01
CCDC88B-210ENST00000494566 HEXA-AS1Q9H8Q6 139 aa15.1■□□□□ 0.01
CCDC88B-210ENST00000494566 Q9N2J8 555 aa15.1■□□□□ 0.01
CCDC88B-210ENST00000494566 RDH8Q9NYR8 311 aa15.1■□□□□ 0.01
CCDC88B-210ENST00000494566 A0A1W2PPC4 97 aa15.09■□□□□ 0.01
CCDC88B-210ENST00000494566 EPXP11678 715 aa15.09■□□□□ 0.01
CCDC88B-210ENST00000494566 IGFBP4P22692 258 aa15.09■□□□□ 0.01
CCDC88B-210ENST00000494566 C19orf57Q0VDD7 668 aa15.09■□□□□ 0.01
CCDC88B-210ENST00000494566 GRK1Q15835 563 aa15.09■□□□□ 0.01
CCDC88B-210ENST00000494566 CBLN3Q6UW01 205 aa15.09■□□□□ 0.01
CCDC88B-210ENST00000494566 APOOLQ6UXV4 268 aa15.09■□□□□ 0.01
CCDC88B-210ENST00000494566 C10orf53Q8N6V4 93 aa15.09■□□□□ 0.01
CCDC88B-210ENST00000494566 ZNF426Q9BUY5 554 aa15.09■□□□□ 0.01
CCDC88B-210ENST00000494566 ULBP3Q9BZM4 244 aa15.09■□□□□ 0.01
CCDC88B-210ENST00000494566 TRIM2Q9C040 744 aa15.09■□□□□ 0.01
Retrieved 100 of 20,778 RNA–protein pairs in 29.1 ms