RNA–Protein interactions for RNA: ENST00000493662.6

MSH5-SAPCD1-207, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS P5 TSL 1 (best) BASIC

Gene MSH5-SAPCD1, Length 3,991 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-207ENST00000493662 POMGNT2Q8NAT1 580 aa9.92□□□□□ -0.82
MSH5-SAPCD1-207ENST00000493662 MSLNLQ96KJ4 702 aa9.92□□□□□ -0.82
MSH5-SAPCD1-207ENST00000493662 KATNB1Q9BVA0 655 aa9.92□□□□□ -0.82
MSH5-SAPCD1-207ENST00000493662 GPATCH2Q9NW75 528 aa9.92□□□□□ -0.82
MSH5-SAPCD1-207ENST00000493662 LIPT1Q9Y234 373 aa9.92□□□□□ -0.82
MSH5-SAPCD1-207ENST00000493662 PI4KAP42356 2102 aa9.92□□□□□ -0.82
MSH5-SAPCD1-207ENST00000493662 MYLKQ15746 1914 aa9.92□□□□□ -0.82
MSH5-SAPCD1-207ENST00000493662 FAAHO00519 579 aa9.91□□□□□ -0.82
MSH5-SAPCD1-207ENST00000493662 EIF1AYO14602 144 aaKnown RBP9.91□□□□□ -0.82
MSH5-SAPCD1-207ENST00000493662 ZNF217O75362 1048 aa9.91□□□□□ -0.82
MSH5-SAPCD1-207ENST00000493662 RGS9O75916 674 aaPredicted RBP9.91□□□□□ -0.82
MSH5-SAPCD1-207ENST00000493662 KRT33AO76009 404 aa9.91□□□□□ -0.82
MSH5-SAPCD1-207ENST00000493662 APBB3O95704 486 aa9.91□□□□□ -0.82
MSH5-SAPCD1-207ENST00000493662 LTBRP36941 435 aa9.91□□□□□ -0.82
MSH5-SAPCD1-207ENST00000493662 PDZK1IP1Q13113 114 aa9.91□□□□□ -0.82
MSH5-SAPCD1-207ENST00000493662 PUM1Q14671 1186 aaKnown RBP eCLIP9.91□□□□□ -0.82
MSH5-SAPCD1-207ENST00000493662 MFSD13AQ14CX5 517 aa9.91□□□□□ -0.82
MSH5-SAPCD1-207ENST00000493662 SEC23BQ15437 767 aa9.91□□□□□ -0.82
MSH5-SAPCD1-207ENST00000493662 FAM122BQ7Z309 247 aa9.91□□□□□ -0.82
MSH5-SAPCD1-207ENST00000493662 MFSD9Q8NBP5 474 aa9.91□□□□□ -0.82
MSH5-SAPCD1-207ENST00000493662 SMRP1Q8NCR6 262 aa9.91□□□□□ -0.82
MSH5-SAPCD1-207ENST00000493662 ZFPM2Q8WW38 1151 aa9.91□□□□□ -0.82
MSH5-SAPCD1-207ENST00000493662 ARL11Q969Q4 196 aa9.91□□□□□ -0.82
MSH5-SAPCD1-207ENST00000493662 NEURL3Q96EH8 262 aa9.91□□□□□ -0.82
MSH5-SAPCD1-207ENST00000493662 ZDHHC12Q96GR4 267 aa9.91□□□□□ -0.82
MSH5-SAPCD1-207ENST00000493662 ACER3Q9NUN7 267 aa9.91□□□□□ -0.82
MSH5-SAPCD1-207ENST00000493662 DAPP1Q9UN19 280 aa9.91□□□□□ -0.82
MSH5-SAPCD1-207ENST00000493662 RCE1Q9Y256 329 aa9.91□□□□□ -0.82
MSH5-SAPCD1-207ENST00000493662 H3BML4 177 aa9.91□□□□□ -0.82
MSH5-SAPCD1-207ENST00000493662 H7C1C5 153 aa9.91□□□□□ -0.82
MSH5-SAPCD1-207ENST00000493662 SCDO00767 359 aa9.91□□□□□ -0.82
MSH5-SAPCD1-207ENST00000493662 LAMTOR5O43504 91 aa9.91□□□□□ -0.82
MSH5-SAPCD1-207ENST00000493662 HCRTR1O43613 425 aa9.91□□□□□ -0.82
MSH5-SAPCD1-207ENST00000493662 SLC2A10O95528 541 aa9.91□□□□□ -0.82
MSH5-SAPCD1-207ENST00000493662 GPR75O95800 540 aa9.91□□□□□ -0.82
MSH5-SAPCD1-207ENST00000493662 SOX2P48431 317 aa9.91□□□□□ -0.82
MSH5-SAPCD1-207ENST00000493662 VEGFCP49767 419 aa9.91□□□□□ -0.82
MSH5-SAPCD1-207ENST00000493662 LCN6P62502 163 aa9.91□□□□□ -0.82
MSH5-SAPCD1-207ENST00000493662 SQSTM1Q13501 440 aa9.91□□□□□ -0.82
MSH5-SAPCD1-207ENST00000493662 GBX1Q14549 363 aa9.91□□□□□ -0.82
MSH5-SAPCD1-207ENST00000493662 FAM180AQ6UWF9 173 aa9.91□□□□□ -0.82
MSH5-SAPCD1-207ENST00000493662 VN1R4Q7Z5H5 301 aa9.91□□□□□ -0.82
MSH5-SAPCD1-207ENST00000493662 RELL2Q8NC24 303 aaPredicted RBP9.91□□□□□ -0.82
MSH5-SAPCD1-207ENST00000493662 SLC35A4Q96G79 324 aa9.91□□□□□ -0.82
MSH5-SAPCD1-207ENST00000493662 MS4A4EQ96PG1 132 aa9.91□□□□□ -0.82
MSH5-SAPCD1-207ENST00000493662 SERINC2Q96SA4 455 aa9.91□□□□□ -0.82
MSH5-SAPCD1-207ENST00000493662 LRRC61Q9BV99 259 aa9.91□□□□□ -0.82
MSH5-SAPCD1-207ENST00000493662 PINK1Q9BXM7 581 aa9.91□□□□□ -0.82
MSH5-SAPCD1-207ENST00000493662 TRIM2Q9C040 744 aa9.91□□□□□ -0.82
MSH5-SAPCD1-207ENST00000493662 HHATLQ9HCP6 504 aa9.91□□□□□ -0.82
MSH5-SAPCD1-207ENST00000493662 ALKBH4Q9NXW9 302 aa9.91□□□□□ -0.82
MSH5-SAPCD1-207ENST00000493662 ELF5Q9UKW6 265 aaPredicted RBP9.91□□□□□ -0.82
MSH5-SAPCD1-207ENST00000493662 COLQQ9Y215 455 aaPredicted RBP9.91□□□□□ -0.82
MSH5-SAPCD1-207ENST00000493662 GPR55Q9Y2T6 319 aaPredicted RBP9.91□□□□□ -0.82
MSH5-SAPCD1-207ENST00000493662 A0A1W2PPV9 198 aa9.91□□□□□ -0.82
MSH5-SAPCD1-207ENST00000493662 TCRBV16S1A1N1A0A5B0 115 aa9.91□□□□□ -0.82
MSH5-SAPCD1-207ENST00000493662 OR5K4A6NMS3 321 aa9.91□□□□□ -0.82
MSH5-SAPCD1-207ENST00000493662 SULT1C2O00338 296 aa9.91□□□□□ -0.82
MSH5-SAPCD1-207ENST00000493662 GABRPO00591 440 aa9.91□□□□□ -0.82
MSH5-SAPCD1-207ENST00000493662 PLA2G10O15496 165 aa9.91□□□□□ -0.82
MSH5-SAPCD1-207ENST00000493662 PPP1R3DO95685 299 aa9.91□□□□□ -0.82
MSH5-SAPCD1-207ENST00000493662 S100A8P05109 93 aa9.91□□□□□ -0.82
MSH5-SAPCD1-207ENST00000493662 EVX1P49640 407 aa9.91□□□□□ -0.82
MSH5-SAPCD1-207ENST00000493662 ADAM8P78325 824 aa9.91□□□□□ -0.82
MSH5-SAPCD1-207ENST00000493662 TMEM151BQ8IW70 566 aa9.91□□□□□ -0.82
MSH5-SAPCD1-207ENST00000493662 KDM8Q8N371 416 aa9.91□□□□□ -0.82
MSH5-SAPCD1-207ENST00000493662 LINC00471Q8N535 108 aa9.91□□□□□ -0.82
MSH5-SAPCD1-207ENST00000493662 C19orf47Q8N9M1 422 aaKnown RBP9.91□□□□□ -0.82
MSH5-SAPCD1-207ENST00000493662 NAXEQ8NCW5 288 aa9.91□□□□□ -0.82
MSH5-SAPCD1-207ENST00000493662 SDR9C7Q8NEX9 313 aa9.91□□□□□ -0.82
MSH5-SAPCD1-207ENST00000493662 OR4M1Q8NGD0 313 aa9.91□□□□□ -0.82
MSH5-SAPCD1-207ENST00000493662 OR13C2Q8NGS9 318 aa9.91□□□□□ -0.82
MSH5-SAPCD1-207ENST00000493662 OR51Q1Q8NH59 317 aa9.91□□□□□ -0.82
MSH5-SAPCD1-207ENST00000493662 TSLPQ969D9 159 aa9.91□□□□□ -0.82
MSH5-SAPCD1-207ENST00000493662 MARVELD3Q96A59 401 aa9.91□□□□□ -0.82
MSH5-SAPCD1-207ENST00000493662 ZMYND19Q96E35 227 aaPredicted RBP9.91□□□□□ -0.82
MSH5-SAPCD1-207ENST00000493662 TRMT61AQ96FX7 289 aaKnown RBP9.91□□□□□ -0.82
MSH5-SAPCD1-207ENST00000493662 LINC00615Q96LM1 132 aaPredicted RBP9.91□□□□□ -0.82
MSH5-SAPCD1-207ENST00000493662 PITX2Q99697 317 aa9.91□□□□□ -0.82
MSH5-SAPCD1-207ENST00000493662 MARVELD1Q9BSK0 173 aa9.91□□□□□ -0.82
MSH5-SAPCD1-207ENST00000493662 TGIF2Q9GZN2 237 aa9.91□□□□□ -0.82
MSH5-SAPCD1-207ENST00000493662 GABARAPL1Q9H0R8 117 aa9.91□□□□□ -0.82
MSH5-SAPCD1-207ENST00000493662 NOX3Q9HBY0 568 aa9.91□□□□□ -0.82
MSH5-SAPCD1-207ENST00000493662 TCF7L1Q9HCS4 588 aa9.91□□□□□ -0.82
MSH5-SAPCD1-207ENST00000493662 NCDNQ9UBB6 729 aa9.91□□□□□ -0.82
MSH5-SAPCD1-207ENST00000493662 PCDHGA9Q9Y5G4 932 aaKnown RBP9.91□□□□□ -0.82
MSH5-SAPCD1-207ENST00000493662 LRRTM2O43300 516 aa9.9□□□□□ -0.82
MSH5-SAPCD1-207ENST00000493662 GRK6P43250 576 aa9.9□□□□□ -0.82
MSH5-SAPCD1-207ENST00000493662 POU4F2Q12837 409 aa9.9□□□□□ -0.82
MSH5-SAPCD1-207ENST00000493662 ZNF79Q15937 498 aa9.9□□□□□ -0.82
MSH5-SAPCD1-207ENST00000493662 DECR1Q16698 335 aa9.9□□□□□ -0.82
MSH5-SAPCD1-207ENST00000493662 BEX5Q5H9J7 111 aa9.9□□□□□ -0.82
MSH5-SAPCD1-207ENST00000493662 UBE3DQ7Z6J8 389 aa9.9□□□□□ -0.82
MSH5-SAPCD1-207ENST00000493662 GPAT4Q86UL3 456 aa9.9□□□□□ -0.82
MSH5-SAPCD1-207ENST00000493662 OR52E2Q8NGJ4 325 aa9.9□□□□□ -0.82
MSH5-SAPCD1-207ENST00000493662 ZNF775Q96BV0 537 aaPredicted RBP9.9□□□□□ -0.82
MSH5-SAPCD1-207ENST00000493662 TBC1D20Q96BZ9 403 aa9.9□□□□□ -0.82
MSH5-SAPCD1-207ENST00000493662 WDFY2Q96P53 400 aa9.9□□□□□ -0.82
MSH5-SAPCD1-207ENST00000493662 RPS10P5Q9NQ39 176 aa9.9□□□□□ -0.82
MSH5-SAPCD1-207ENST00000493662 PRDM7Q9NQW5 492 aa9.9□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 43.7 ms