RNA–Protein interactions for RNA: ENST00000490839.1

AGAP3-222, Transcript of ArfGAP with GTPase domain, ankyrin repeat and PH domain 3, human

TSL 4

Gene AGAP3, Length 592 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
AGAP3-222	ENST00000490839	CLDND2	Q8NHS1	167 aa		13.16	□□□□□ -0.3
AGAP3-222	ENST00000490839	RHOXF2	Q9BQY4	288 aa		13.16	□□□□□ -0.3
AGAP3-222	ENST00000490839	RBM4	Q9BWF3	364 aa	Known RBP	13.16	□□□□□ -0.3
AGAP3-222	ENST00000490839	NOX3	Q9HBY0	568 aa		13.16	□□□□□ -0.3
AGAP3-222	ENST00000490839	CMAHP	Q9Y471	501 aa		13.16	□□□□□ -0.3
AGAP3-222	ENST00000490839	CDHR4	A6H8M9	788 aa		13.15	□□□□□ -0.3
AGAP3-222	ENST00000490839	TMEM229A	B2RXF0	380 aa		13.15	□□□□□ -0.3
AGAP3-222	ENST00000490839	TRIM77	I1YAP6	450 aa		13.15	□□□□□ -0.3
AGAP3-222	ENST00000490839		M0R233	179 aa		13.15	□□□□□ -0.3
AGAP3-222	ENST00000490839	KCNAB3	O43448	404 aa		13.15	□□□□□ -0.3
AGAP3-222	ENST00000490839	SYNGR3	O43761	229 aa		13.15	□□□□□ -0.3
AGAP3-222	ENST00000490839	NPIPB7	O75200	414 aa		13.15	□□□□□ -0.3
AGAP3-222	ENST00000490839	SLC43A1	O75387	559 aa		13.15	□□□□□ -0.3
AGAP3-222	ENST00000490839	TFPT	P0C1Z6	253 aa		13.15	□□□□□ -0.3
AGAP3-222	ENST00000490839	SAG	P10523	405 aa	Predicted RBP	13.15	□□□□□ -0.3
AGAP3-222	ENST00000490839	GPR6	P46095	362 aa	Predicted RBP	13.15	□□□□□ -0.3
AGAP3-222	ENST00000490839	CLNS1A	P54105	237 aa	Known RBP	13.15	□□□□□ -0.3
AGAP3-222	ENST00000490839	LIN52	Q52LA3	116 aa		13.15	□□□□□ -0.3
AGAP3-222	ENST00000490839	SPANXN4	Q5MJ08	99 aa		13.15	□□□□□ -0.3
AGAP3-222	ENST00000490839	REP15	Q6BDI9	236 aa		13.15	□□□□□ -0.3
AGAP3-222	ENST00000490839	MDP1	Q86V88	176 aa		13.15	□□□□□ -0.3
AGAP3-222	ENST00000490839	CCDC36	Q8IYA8	594 aa		13.15	□□□□□ -0.3
AGAP3-222	ENST00000490839	PEX5L	Q8IYB4	626 aa		13.15	□□□□□ -0.3
AGAP3-222	ENST00000490839	CADM2	Q8N3J6	435 aa		13.15	□□□□□ -0.3
AGAP3-222	ENST00000490839	TEX29	Q8N6K0	151 aa		13.15	□□□□□ -0.3
AGAP3-222	ENST00000490839	OR51F2	Q8NH61	342 aa		13.15	□□□□□ -0.3
AGAP3-222	ENST00000490839	MRPL24	Q96A35	216 aa	Known RBP	13.15	□□□□□ -0.3
AGAP3-222	ENST00000490839	CCDC115	Q96NT0	180 aa		13.15	□□□□□ -0.3
AGAP3-222	ENST00000490839	RACGAP1	Q9H0H5	632 aa		13.15	□□□□□ -0.3
AGAP3-222	ENST00000490839	AKTIP	Q9H8T0	292 aa		13.15	□□□□□ -0.3
AGAP3-222	ENST00000490839	CRLF2	Q9HC73	371 aa		13.15	□□□□□ -0.3
AGAP3-222	ENST00000490839	RLIM	Q9NVW2	624 aa		13.15	□□□□□ -0.3
AGAP3-222	ENST00000490839	BTNL2	Q9UIR0	455 aa		13.15	□□□□□ -0.3
AGAP3-222	ENST00000490839	PCDHB10	Q9UN67	800 aa		13.15	□□□□□ -0.3
AGAP3-222	ENST00000490839	USP22	Q9UPT9	525 aa		13.15	□□□□□ -0.3
AGAP3-222	ENST00000490839	ZNF503-AS2	A6NEH8	195 aa		13.14	□□□□□ -0.31
AGAP3-222	ENST00000490839	ZNF432	O94892	652 aa		13.14	□□□□□ -0.31
AGAP3-222	ENST00000490839	AHSA1	O95433	338 aa		13.14	□□□□□ -0.31
AGAP3-222	ENST00000490839	C1QC	P02747	245 aa		13.14	□□□□□ -0.31
AGAP3-222	ENST00000490839	GKN3P	P0CG01	181 aa		13.14	□□□□□ -0.31
AGAP3-222	ENST00000490839	NR2F1	P10589	423 aa		13.14	□□□□□ -0.31
AGAP3-222	ENST00000490839	ACHE	P22303	614 aa		13.14	□□□□□ -0.31
AGAP3-222	ENST00000490839	NR4A1	P22736	598 aa		13.14	□□□□□ -0.31
AGAP3-222	ENST00000490839	ACAA2	P42765	397 aa	Known RBP	13.14	□□□□□ -0.31
AGAP3-222	ENST00000490839	PDCD2	Q16342	344 aa	Predicted RBP	13.14	□□□□□ -0.31
AGAP3-222	ENST00000490839	ELFN2	Q5R3F8	820 aa		13.14	□□□□□ -0.31
AGAP3-222	ENST00000490839	KRT80	Q6KB66	452 aa		13.14	□□□□□ -0.31
AGAP3-222	ENST00000490839	PEG10	Q86TG7	708 aa	Known RBP	13.14	□□□□□ -0.31
AGAP3-222	ENST00000490839	TRIML2	Q8N7C3	387 aa		13.14	□□□□□ -0.31
AGAP3-222	ENST00000490839	EIF1AD	Q8N9N8	165 aa	Known RBP	13.14	□□□□□ -0.31
AGAP3-222	ENST00000490839	MFSD8	Q8NHS3	518 aa		13.14	□□□□□ -0.31
AGAP3-222	ENST00000490839	STK35	Q8TDR2	534 aa		13.14	□□□□□ -0.31
AGAP3-222	ENST00000490839	TCP10L	Q8TDR4	215 aa		13.14	□□□□□ -0.31
AGAP3-222	ENST00000490839	RDH5	Q92781	318 aa		13.14	□□□□□ -0.31
AGAP3-222	ENST00000490839	LRRC37B	Q96QE4	947 aa		13.14	□□□□□ -0.31
AGAP3-222	ENST00000490839	JMJD8	Q96S16	334 aa		13.14	□□□□□ -0.31
AGAP3-222	ENST00000490839	MRPL37	Q9BZE1	423 aa	Known RBP	13.14	□□□□□ -0.31
AGAP3-222	ENST00000490839	MS4A5	Q9H3V2	200 aa		13.14	□□□□□ -0.31
AGAP3-222	ENST00000490839	NARFL	Q9H6Q4	476 aa		13.14	□□□□□ -0.31
AGAP3-222	ENST00000490839	LPAR2	Q9HBW0	351 aa		13.14	□□□□□ -0.31
AGAP3-222	ENST00000490839	GPR35	Q9HC97	309 aa		13.14	□□□□□ -0.31
AGAP3-222	ENST00000490839	REV1	Q9UBZ9	1251 aa		13.14	□□□□□ -0.31
AGAP3-222	ENST00000490839	WNK2	Q9Y3S1	2297 aa		13.13	□□□□□ -0.31
AGAP3-222	ENST00000490839	FTCDNL1	E5RQL4	147 aa		13.13	□□□□□ -0.31
AGAP3-222	ENST00000490839		E9PBE3	544 aa		13.13	□□□□□ -0.31
AGAP3-222	ENST00000490839	RGS9	O75916	674 aa	Predicted RBP	13.13	□□□□□ -0.31
AGAP3-222	ENST00000490839	PNMT	P11086	282 aa		13.13	□□□□□ -0.31
AGAP3-222	ENST00000490839	ZNF43	P17038	809 aa		13.13	□□□□□ -0.31
AGAP3-222	ENST00000490839	GTF2E2	P29084	291 aa	Known RBP	13.13	□□□□□ -0.31
AGAP3-222	ENST00000490839	S100A3	P33764	101 aa		13.13	□□□□□ -0.31
AGAP3-222	ENST00000490839	CAPZA2	P47755	286 aa		13.13	□□□□□ -0.31
AGAP3-222	ENST00000490839	LIMS1	P48059	325 aa		13.13	□□□□□ -0.31
AGAP3-222	ENST00000490839	ARFIP2	P53365	341 aa		13.13	□□□□□ -0.31
AGAP3-222	ENST00000490839	CLDN17	P56750	224 aa		13.13	□□□□□ -0.31
AGAP3-222	ENST00000490839	CEACAM16	Q2WEN9	425 aa		13.13	□□□□□ -0.31
AGAP3-222	ENST00000490839	RNF220	Q5VTB9	566 aa		13.13	□□□□□ -0.31
AGAP3-222	ENST00000490839	ZNF836	Q6ZNA1	936 aa		13.13	□□□□□ -0.31
AGAP3-222	ENST00000490839	GPR137C	Q8N3F9	429 aa		13.13	□□□□□ -0.31
AGAP3-222	ENST00000490839	RIBC1	Q8N443	379 aa	Predicted RBP	13.13	□□□□□ -0.31
AGAP3-222	ENST00000490839	PPP1R36	Q96LQ0	422 aa		13.13	□□□□□ -0.31
AGAP3-222	ENST00000490839	DSPP	Q9NZW4	1301 aa		13.13	□□□□□ -0.31
AGAP3-222	ENST00000490839	TG	P01266	2768 aa		13.12	□□□□□ -0.31
AGAP3-222	ENST00000490839	TRAV20	A0A0B4J274	112 aa		13.12	□□□□□ -0.31
AGAP3-222	ENST00000490839	TLDC2	A0PJX2	215 aa		13.12	□□□□□ -0.31
AGAP3-222	ENST00000490839	CCDC154	A6NI56	674 aa		13.12	□□□□□ -0.31
AGAP3-222	ENST00000490839	ZNF99	A8MXY4	864 aa	Predicted RBP	13.12	□□□□□ -0.31
AGAP3-222	ENST00000490839	AKAP8	O43823	692 aa	Known RBP	13.12	□□□□□ -0.31
AGAP3-222	ENST00000490839	SPAG7	O75391	227 aa		13.12	□□□□□ -0.31
AGAP3-222	ENST00000490839	PNP	P00491	289 aa		13.12	□□□□□ -0.31
AGAP3-222	ENST00000490839	BPGM	P07738	259 aa		13.12	□□□□□ -0.31
AGAP3-222	ENST00000490839	GAA	P10253	952 aa		13.12	□□□□□ -0.31
AGAP3-222	ENST00000490839	EPHA1	P21709	976 aa		13.12	□□□□□ -0.31
AGAP3-222	ENST00000490839	TMEM33	P57088	247 aa		13.12	□□□□□ -0.31
AGAP3-222	ENST00000490839	MRPS11	P82912	194 aa	Known RBP	13.12	□□□□□ -0.31
AGAP3-222	ENST00000490839	MSMP	Q1L6U9	139 aa		13.12	□□□□□ -0.31
AGAP3-222	ENST00000490839	CARM1	Q86X55	608 aa		13.12	□□□□□ -0.31
AGAP3-222	ENST00000490839	KDM8	Q8N371	416 aa		13.12	□□□□□ -0.31
AGAP3-222	ENST00000490839	PIK3C3	Q8NEB9	887 aa		13.12	□□□□□ -0.31
AGAP3-222	ENST00000490839	PANX1	Q96RD7	426 aa		13.12	□□□□□ -0.31
AGAP3-222	ENST00000490839	PTDSS2	Q9BVG9	487 aa		13.12	□□□□□ -0.31

Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms