RNA–Protein interactions for RNA: ENST00000489853.1

SNRNP40-206, Transcript of small nuclear ribonucleoprotein U5 subunit 40, humanhuman

TSL 2

Gene SNRNP40, Length 1,928 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNRNP40-206ENST00000489853 TBC1D3CQ6IPX1 549 aa4.38□□□□□ -1.71
SNRNP40-206ENST00000489853 C11orf87Q6NUJ2 197 aa4.38□□□□□ -1.71
SNRNP40-206ENST00000489853 REEP3Q6NUK4 255 aa4.38□□□□□ -1.71
SNRNP40-206ENST00000489853 TCTN3Q6NUS6 607 aa4.38□□□□□ -1.71
SNRNP40-206ENST00000489853 LPCAT3Q6P1A2 487 aa4.38□□□□□ -1.71
SNRNP40-206ENST00000489853 C1orf94Q6P1W5 598 aa4.38□□□□□ -1.71
SNRNP40-206ENST00000489853 CLEC9AQ6UXN8 241 aa4.38□□□□□ -1.71
SNRNP40-206ENST00000489853 UNQ6494/PRO21346Q6UXR6 183 aa4.38□□□□□ -1.71
SNRNP40-206ENST00000489853 FAM83HQ6ZRV2 1179 aaPredicted RBP4.38□□□□□ -1.71
SNRNP40-206ENST00000489853 OVCH1Q7RTY7 1134 aa4.38□□□□□ -1.71
SNRNP40-206ENST00000489853 PLPPR4Q7Z2D5 763 aa4.38□□□□□ -1.71
SNRNP40-206ENST00000489853 SCD5Q86SK9 330 aa4.38□□□□□ -1.71
SNRNP40-206ENST00000489853 LRRTM1Q86UE6 522 aa4.38□□□□□ -1.71
SNRNP40-206ENST00000489853 TBC1D3Q8IZP1 549 aaPredicted RBP4.38□□□□□ -1.71
SNRNP40-206ENST00000489853 CCDC54Q8NEL0 328 aa4.38□□□□□ -1.71
SNRNP40-206ENST00000489853 OR4D9Q8NGE8 314 aa4.38□□□□□ -1.71
SNRNP40-206ENST00000489853 OR5AP2Q8NGF4 316 aa4.38□□□□□ -1.71
SNRNP40-206ENST00000489853 OR9A2Q8NGT5 310 aa4.38□□□□□ -1.71
SNRNP40-206ENST00000489853 OR5W2Q8NH69 310 aa4.38□□□□□ -1.71
SNRNP40-206ENST00000489853 OR5R1Q8NH85 324 aa4.38□□□□□ -1.71
SNRNP40-206ENST00000489853 PIGXQ8TBF5 258 aa4.38□□□□□ -1.71
SNRNP40-206ENST00000489853 POC1BQ8TC44 478 aa4.38□□□□□ -1.71
SNRNP40-206ENST00000489853 MAFIPQ8WZ33 124 aa4.38□□□□□ -1.71
SNRNP40-206ENST00000489853 ROBO4Q8WZ75 1007 aa4.38□□□□□ -1.71
SNRNP40-206ENST00000489853 ECHDC3Q96DC8 303 aa4.38□□□□□ -1.71
SNRNP40-206ENST00000489853 SMARCD1Q96GM5 515 aa4.38□□□□□ -1.71
SNRNP40-206ENST00000489853 LRIG1Q96JA1 1093 aa4.38□□□□□ -1.71
SNRNP40-206ENST00000489853 FCRL2Q96LA5 508 aaPredicted RBP4.38□□□□□ -1.71
SNRNP40-206ENST00000489853 CCNL2Q96S94 520 aaPredicted RBP4.38□□□□□ -1.71
SNRNP40-206ENST00000489853 MED10Q9BTT4 135 aa4.38□□□□□ -1.71
SNRNP40-206ENST00000489853 TRMT61BQ9BVS5 477 aaKnown RBP4.38□□□□□ -1.71
SNRNP40-206ENST00000489853 TEX12Q9BXU0 123 aa4.38□□□□□ -1.71
SNRNP40-206ENST00000489853 ADGRE3Q9BY15 652 aa4.38□□□□□ -1.71
SNRNP40-206ENST00000489853 LAT2Q9GZY6 243 aa4.38□□□□□ -1.71
SNRNP40-206ENST00000489853 P2RY12Q9H244 342 aa4.38□□□□□ -1.71
SNRNP40-206ENST00000489853 OR52A5Q9H2C5 316 aa4.38□□□□□ -1.71
SNRNP40-206ENST00000489853 RIMS4Q9H426 269 aaPredicted RBP4.38□□□□□ -1.71
SNRNP40-206ENST00000489853 SLC32A1Q9H598 525 aa4.38□□□□□ -1.71
SNRNP40-206ENST00000489853 PTGES2Q9H7Z7 377 aa4.38□□□□□ -1.71
SNRNP40-206ENST00000489853 TRIM36Q9NQ86 728 aa4.38□□□□□ -1.71
SNRNP40-206ENST00000489853 SIRT7Q9NRC8 400 aa4.38□□□□□ -1.71
SNRNP40-206ENST00000489853 MED17Q9NVC6 651 aa4.38□□□□□ -1.71
SNRNP40-206ENST00000489853 COMMD9Q9P000 198 aa4.38□□□□□ -1.71
SNRNP40-206ENST00000489853 CACFD1Q9UGQ2 172 aa4.38□□□□□ -1.71
SNRNP40-206ENST00000489853 MBD1Q9UIS9 605 aaPredicted RBP4.38□□□□□ -1.71
SNRNP40-206ENST00000489853 RUVBL1Q9Y265 456 aaKnown RBP4.38□□□□□ -1.71
SNRNP40-206ENST00000489853 TMED3Q9Y3Q3 217 aa4.38□□□□□ -1.71
SNRNP40-206ENST00000489853 PPP2R3BQ9Y5P8 575 aa4.38□□□□□ -1.71
SNRNP40-206ENST00000489853 KPTNQ9Y664 436 aa4.38□□□□□ -1.71
SNRNP40-206ENST00000489853 CCDC187A0A096LP49 1063 aa4.38□□□□□ -1.71
SNRNP40-206ENST00000489853 C7orf77A4D0Y5 90 aa4.38□□□□□ -1.71
SNRNP40-206ENST00000489853 A6NLC8 198 aa4.38□□□□□ -1.71
SNRNP40-206ENST00000489853 TMEM210A6NLX4 147 aa4.38□□□□□ -1.71
SNRNP40-206ENST00000489853 VSTM5A8MXK1 200 aa4.38□□□□□ -1.71
SNRNP40-206ENST00000489853 RPL36A-HNRNPH2H7BZ11 118 aa4.38□□□□□ -1.71
SNRNP40-206ENST00000489853 J3QRE1 110 aa4.38□□□□□ -1.71
SNRNP40-206ENST00000489853 PIRO00625 290 aa4.38□□□□□ -1.71
SNRNP40-206ENST00000489853 FLRT2O43155 660 aa4.38□□□□□ -1.71
SNRNP40-206ENST00000489853 OR10H2O60403 315 aa4.38□□□□□ -1.71
SNRNP40-206ENST00000489853 FKTNO75072 461 aa4.38□□□□□ -1.71
SNRNP40-206ENST00000489853 PMS2P2O95744 297 aa4.38□□□□□ -1.71
SNRNP40-206ENST00000489853 IGLV3-25P01717 112 aa4.38□□□□□ -1.71
SNRNP40-206ENST00000489853 RLN1P04808 185 aa4.38□□□□□ -1.71
SNRNP40-206ENST00000489853 CD14P08571 375 aa4.38□□□□□ -1.71
SNRNP40-206ENST00000489853 SPARCP09486 303 aa4.38□□□□□ -1.71
SNRNP40-206ENST00000489853 RAB40ALP0C0E4 278 aa4.38□□□□□ -1.71
SNRNP40-206ENST00000489853 ACP5P13686 325 aa4.38□□□□□ -1.71
SNRNP40-206ENST00000489853 TPT1P13693 172 aaKnown RBP4.38□□□□□ -1.71
SNRNP40-206ENST00000489853 ZNF25P17030 456 aaPredicted RBP4.38□□□□□ -1.71
SNRNP40-206ENST00000489853 CR2P20023 1033 aa4.38□□□□□ -1.71
SNRNP40-206ENST00000489853 LPOP22079 712 aaPredicted RBP4.38□□□□□ -1.71
SNRNP40-206ENST00000489853 MMP11P24347 488 aa4.38□□□□□ -1.71
SNRNP40-206ENST00000489853 G0S2P27469 103 aa4.38□□□□□ -1.71
SNRNP40-206ENST00000489853 HTR1FP30939 366 aa4.38□□□□□ -1.71
SNRNP40-206ENST00000489853 CASRP41180 1078 aa4.38□□□□□ -1.71
SNRNP40-206ENST00000489853 RBM34P42696 430 aaKnown RBP4.38□□□□□ -1.71
SNRNP40-206ENST00000489853 KIR3DL2P43630 455 aa4.38□□□□□ -1.71
SNRNP40-206ENST00000489853 NDUFA6P56556 154 aa4.38□□□□□ -1.71
SNRNP40-206ENST00000489853 RAB1AP62820 205 aa4.38□□□□□ -1.71
SNRNP40-206ENST00000489853 ZXDBP98169 803 aa4.38□□□□□ -1.71
SNRNP40-206ENST00000489853 GLO1Q04760 184 aa4.38□□□□□ -1.71
SNRNP40-206ENST00000489853 EIF4EBP2Q13542 120 aaPredicted RBP4.38□□□□□ -1.71
SNRNP40-206ENST00000489853 DDX39BQ13838 428 aaKnown RBP4.38□□□□□ -1.71
SNRNP40-206ENST00000489853 ZNF234Q14588 700 aa4.38□□□□□ -1.71
SNRNP40-206ENST00000489853 TAF13Q15543 124 aa4.38□□□□□ -1.71
SNRNP40-206ENST00000489853 TOMM34Q15785 309 aaPredicted RBP4.38□□□□□ -1.71
SNRNP40-206ENST00000489853 ALG11Q2TAA5 492 aa4.38□□□□□ -1.71
SNRNP40-206ENST00000489853 ACSM3Q53FZ2 586 aa4.38□□□□□ -1.71
SNRNP40-206ENST00000489853 TMEM31Q5JXX7 168 aa4.38□□□□□ -1.71
SNRNP40-206ENST00000489853 LY6G6FQ5SQ64 297 aa4.38□□□□□ -1.71
SNRNP40-206ENST00000489853 FAM46CQ5VWP2 391 aa4.38□□□□□ -1.71
SNRNP40-206ENST00000489853 FRG2Q64ET8 278 aa4.38□□□□□ -1.71
SNRNP40-206ENST00000489853 CDPF1Q6NVV7 123 aa4.38□□□□□ -1.71
SNRNP40-206ENST00000489853 PODNL1Q6PEZ8 512 aa4.38□□□□□ -1.71
SNRNP40-206ENST00000489853 ENPP7Q6UWV6 458 aa4.38□□□□□ -1.71
SNRNP40-206ENST00000489853 DNM1P46Q6ZS02 220 aa4.38□□□□□ -1.71
SNRNP40-206ENST00000489853 RANBP3LQ86VV4 465 aaPredicted RBP4.38□□□□□ -1.71
SNRNP40-206ENST00000489853 FBXO16Q8IX29 292 aaPredicted RBP4.38□□□□□ -1.71
SNRNP40-206ENST00000489853 BAP18Q8IXM2 172 aa4.38□□□□□ -1.71
SNRNP40-206ENST00000489853 PIANPQ8IYJ0 282 aa4.38□□□□□ -1.71
Retrieved 100 of 20,778 RNA–protein pairs in 28.1 ms