RNA–Protein interactions for RNA: ENST00000488896.1

PTPN4-212, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

TSL 4

Gene PTPN4, Length 575 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-212ENST00000488896 PDZK1IP1Q13113 114 aa2.35□□□□□ -2.03
PTPN4-212ENST00000488896 SLC15A2Q16348 729 aa2.35□□□□□ -2.03
PTPN4-212ENST00000488896 NLRP9Q7RTR0 991 aa2.35□□□□□ -2.03
PTPN4-212ENST00000488896 CCDC65Q8IXS2 484 aa2.35□□□□□ -2.03
PTPN4-212ENST00000488896 ACTRT1Q8TDG2 376 aa2.35□□□□□ -2.03
PTPN4-212ENST00000488896 NIPSNAP3BQ9BS92 247 aa2.35□□□□□ -2.03
PTPN4-212ENST00000488896 NOX3Q9HBY0 568 aa2.35□□□□□ -2.03
PTPN4-212ENST00000488896 SLC40A1Q9NP59 571 aa2.35□□□□□ -2.03
PTPN4-212ENST00000488896 RASD1Q9Y272 281 aa2.35□□□□□ -2.03
PTPN4-212ENST00000488896 RPL36Q9Y3U8 105 aaKnown RBP2.35□□□□□ -2.03
PTPN4-212ENST00000488896 PLAC8L1A1L4L8 177 aa2.34□□□□□ -2.03
PTPN4-212ENST00000488896 F8WDY8 70 aa2.34□□□□□ -2.03
PTPN4-212ENST00000488896 ALDOBP05062 364 aa2.34□□□□□ -2.03
PTPN4-212ENST00000488896 CALCBP10092 127 aa2.34□□□□□ -2.03
PTPN4-212ENST00000488896 TDO2P48775 406 aa2.34□□□□□ -2.03
PTPN4-212ENST00000488896 SGCAQ16586 387 aa2.34□□□□□ -2.03
PTPN4-212ENST00000488896 OR52E8Q6IFG1 317 aa2.34□□□□□ -2.03
PTPN4-212ENST00000488896 SHISA6Q6ZSJ9 500 aa2.34□□□□□ -2.03
PTPN4-212ENST00000488896 PGAP1Q75T13 922 aa2.34□□□□□ -2.03
PTPN4-212ENST00000488896 KRTAP13-1Q8IUC0 172 aa2.34□□□□□ -2.03
PTPN4-212ENST00000488896 OR1N2Q8NGR9 330 aa2.34□□□□□ -2.03
PTPN4-212ENST00000488896 OR2G3Q8NGZ4 309 aa2.34□□□□□ -2.03
PTPN4-212ENST00000488896 OR5W2Q8NH69 310 aa2.34□□□□□ -2.03
PTPN4-212ENST00000488896 FAM3CQ92520 227 aa2.34□□□□□ -2.03
PTPN4-212ENST00000488896 SMARCD2Q92925 531 aa2.34□□□□□ -2.03
PTPN4-212ENST00000488896 TM4SF19Q96DZ7 209 aa2.34□□□□□ -2.03
PTPN4-212ENST00000488896 SH3YL1Q96HL8 342 aaPredicted RBP2.34□□□□□ -2.03
PTPN4-212ENST00000488896 C4orf36Q96KX1 117 aa2.34□□□□□ -2.03
PTPN4-212ENST00000488896 ULBP2Q9BZM5 246 aa2.34□□□□□ -2.03
PTPN4-212ENST00000488896 IL26Q9NPH9 171 aa2.34□□□□□ -2.03
PTPN4-212ENST00000488896 THUMPD1Q9NXG2 353 aaKnown RBP2.34□□□□□ -2.03
PTPN4-212ENST00000488896 LOC110117498-PIK3R3F6TDL0 507 aa2.33□□□□□ -2.04
PTPN4-212ENST00000488896 SLC31A2O15432 143 aa2.33□□□□□ -2.04
PTPN4-212ENST00000488896 RGS16O15492 202 aaPredicted RBP2.33□□□□□ -2.04
PTPN4-212ENST00000488896 RCBTB2O95199 551 aa2.33□□□□□ -2.04
PTPN4-212ENST00000488896 ADRA2AP08913 450 aa2.33□□□□□ -2.04
PTPN4-212ENST00000488896 RNASE2P10153 161 aaKnown RBP2.33□□□□□ -2.04
PTPN4-212ENST00000488896 ZNF30P17039 623 aa2.33□□□□□ -2.04
PTPN4-212ENST00000488896 GCAP28676 217 aa2.33□□□□□ -2.04
PTPN4-212ENST00000488896 P2RY1P47900 373 aa2.33□□□□□ -2.04
PTPN4-212ENST00000488896 ACADVLP49748 655 aa2.33□□□□□ -2.04
PTPN4-212ENST00000488896 ACVR1Q04771 509 aa2.33□□□□□ -2.04
PTPN4-212ENST00000488896 PDIA2Q13087 525 aaKnown RBP2.33□□□□□ -2.04
PTPN4-212ENST00000488896 PRR9Q5T870 116 aa2.33□□□□□ -2.04
PTPN4-212ENST00000488896 AFTPHQ6ULP2 937 aa2.33□□□□□ -2.04
PTPN4-212ENST00000488896 LYPD2Q6UXB3 125 aa2.33□□□□□ -2.04
PTPN4-212ENST00000488896 NEGR1Q7Z3B1 354 aa2.33□□□□□ -2.04
PTPN4-212ENST00000488896 ZNF546Q86UE3 836 aa2.33□□□□□ -2.04
PTPN4-212ENST00000488896 SLC38A6Q8IZM9 456 aa2.33□□□□□ -2.04
PTPN4-212ENST00000488896 CENPLQ8N0S6 344 aaPredicted RBP2.33□□□□□ -2.04
PTPN4-212ENST00000488896 CNNM3Q8NE01 707 aa2.33□□□□□ -2.04
PTPN4-212ENST00000488896 OR52P1PQ8NH57 321 aa2.33□□□□□ -2.04
PTPN4-212ENST00000488896 RAET1EQ8TD07 263 aa2.33□□□□□ -2.04
PTPN4-212ENST00000488896 CCDC47Q96A33 483 aaKnown RBP2.33□□□□□ -2.04
PTPN4-212ENST00000488896 ECSITQ9BQ95 431 aa2.33□□□□□ -2.04
PTPN4-212ENST00000488896 GLRX2Q9NS18 164 aa2.33□□□□□ -2.04
PTPN4-212ENST00000488896 GGA2Q9UJY4 613 aa2.33□□□□□ -2.04
PTPN4-212ENST00000488896 MRPS33Q9Y291 106 aaKnown RBP2.33□□□□□ -2.04
PTPN4-212ENST00000488896 NFASCO94856 1347 aa2.33□□□□□ -2.04
PTPN4-212ENST00000488896 PCM1Q15154 2024 aa2.32□□□□□ -2.04
PTPN4-212ENST00000488896 LRP5LA4QPB2 252 aa2.32□□□□□ -2.04
PTPN4-212ENST00000488896 CMA1P23946 247 aa2.32□□□□□ -2.04
PTPN4-212ENST00000488896 RDXP35241 583 aaKnown RBP2.32□□□□□ -2.04
PTPN4-212ENST00000488896 SF3A2Q15428 464 aaKnown RBP2.32□□□□□ -2.04
PTPN4-212ENST00000488896 ZBED5Q49AG3 693 aa2.32□□□□□ -2.04
PTPN4-212ENST00000488896 COX19Q49B96 90 aa2.32□□□□□ -2.04
PTPN4-212ENST00000488896 FBXW9Q5XUX1 488 aa2.32□□□□□ -2.04
PTPN4-212ENST00000488896 CALHM3Q86XJ0 350 aa2.32□□□□□ -2.04
PTPN4-212ENST00000488896 SLC35F2Q8IXU6 374 aa2.32□□□□□ -2.04
PTPN4-212ENST00000488896 ZNF619Q8N2I2 560 aa2.32□□□□□ -2.04
PTPN4-212ENST00000488896 ZNF461Q8TAF7 563 aa2.32□□□□□ -2.04
PTPN4-212ENST00000488896 SPRYD4Q8WW59 207 aaPredicted RBP2.32□□□□□ -2.04
PTPN4-212ENST00000488896 ACOT11Q8WXI4 607 aaPredicted RBP2.32□□□□□ -2.04
PTPN4-212ENST00000488896 OR10C1Q96KK4 312 aa2.32□□□□□ -2.04
PTPN4-212ENST00000488896 RIOK2Q9BVS4 552 aaKnown RBP2.32□□□□□ -2.04
PTPN4-212ENST00000488896 REEP4Q9H6H4 257 aa2.32□□□□□ -2.04
PTPN4-212ENST00000488896 TM9SF3Q9HD45 589 aa2.32□□□□□ -2.04
PTPN4-212ENST00000488896 HOOK1Q9UJC3 728 aaKnown RBP2.32□□□□□ -2.04
PTPN4-212ENST00000488896 MFHAS1Q9Y4C4 1052 aa2.32□□□□□ -2.04
PTPN4-212ENST00000488896 PHF3Q92576 2039 aaKnown RBP2.31□□□□□ -2.04
PTPN4-212ENST00000488896 A0A087WZY1 265 aa2.31□□□□□ -2.04
PTPN4-212ENST00000488896 ZNF233A6NK53 670 aa2.31□□□□□ -2.04
PTPN4-212ENST00000488896 TAPBPO15533 448 aa2.31□□□□□ -2.04
PTPN4-212ENST00000488896 IL10P22301 178 aa2.31□□□□□ -2.04
PTPN4-212ENST00000488896 FGF8P55075 233 aaPredicted RBP2.31□□□□□ -2.04
PTPN4-212ENST00000488896 FZD2Q14332 565 aa2.31□□□□□ -2.04
PTPN4-212ENST00000488896 PRSS8Q16651 343 aa2.31□□□□□ -2.04
PTPN4-212ENST00000488896 TMEM41BQ5BJD5 291 aa2.31□□□□□ -2.04
PTPN4-212ENST00000488896 C1orf94Q6P1W5 598 aa2.31□□□□□ -2.04
PTPN4-212ENST00000488896 GRAMD2AQ8IUY3 354 aa2.31□□□□□ -2.04
PTPN4-212ENST00000488896 ARL10Q8N8L6 244 aa2.31□□□□□ -2.04
PTPN4-212ENST00000488896 ACOT4Q8N9L9 421 aa2.31□□□□□ -2.04
PTPN4-212ENST00000488896 CD300LFQ8TDQ1 290 aa2.31□□□□□ -2.04
PTPN4-212ENST00000488896 C1orf21Q9H246 121 aa2.31□□□□□ -2.04
PTPN4-212ENST00000488896 SPNS1Q9H2V7 528 aa2.31□□□□□ -2.04
PTPN4-212ENST00000488896 ELOVL3Q9HB03 270 aa2.31□□□□□ -2.04
PTPN4-212ENST00000488896 CTPS2Q9NRF8 586 aa2.31□□□□□ -2.04
PTPN4-212ENST00000488896 CARMIL3Q8ND23 1372 aa2.31□□□□□ -2.04
PTPN4-212ENST00000488896 KIR2DS1A0A191URI9 304 aa2.3□□□□□ -2.04
PTPN4-212ENST00000488896 CIB4A0PJX0 185 aa2.3□□□□□ -2.04
Retrieved 100 of 20,778 RNA–protein pairs in 52.4 ms