RNA–Protein interactions for RNA: ENST00000485450.5

USP4-211, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 2

Gene USP4, Length 3,541 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-211ENST00000485450 SEMA7AO75326 666 aa7.04□□□□□ -1.28
USP4-211ENST00000485450 ALDOBP05062 364 aa7.04□□□□□ -1.28
USP4-211ENST00000485450 GABRA1P14867 456 aa7.04□□□□□ -1.28
USP4-211ENST00000485450 NFYAP23511 347 aaPredicted RBP7.04□□□□□ -1.28
USP4-211ENST00000485450 CRABP1P29762 137 aa7.04□□□□□ -1.28
USP4-211ENST00000485450 PNLIPRP1P54315 467 aa7.04□□□□□ -1.28
USP4-211ENST00000485450 OR1D5P58170 312 aa7.04□□□□□ -1.28
USP4-211ENST00000485450 EGR3Q06889 387 aa7.04□□□□□ -1.28
USP4-211ENST00000485450 TMEM255AQ5JRV8 349 aa7.04□□□□□ -1.28
USP4-211ENST00000485450 HES3Q5TGS1 186 aa7.04□□□□□ -1.28
USP4-211ENST00000485450 MSANTD1Q6ZTZ1 278 aa7.04□□□□□ -1.28
USP4-211ENST00000485450 CFAP206Q8IYR0 622 aa7.04□□□□□ -1.28
USP4-211ENST00000485450 PRSS35Q8N3Z0 413 aa7.04□□□□□ -1.28
USP4-211ENST00000485450 SYT14Q8NB59 555 aa7.04□□□□□ -1.28
USP4-211ENST00000485450 CPEB3Q8NE35 698 aaKnown RBP7.04□□□□□ -1.28
USP4-211ENST00000485450 ZNF480Q8WV37 535 aa7.04□□□□□ -1.28
USP4-211ENST00000485450 LCORQ96JN0 433 aaPredicted RBP7.04□□□□□ -1.28
USP4-211ENST00000485450 OR4K3Q96R72 315 aa7.04□□□□□ -1.28
USP4-211ENST00000485450 TCEAL7Q9BRU2 100 aa7.04□□□□□ -1.28
USP4-211ENST00000485450 LHX9Q9NQ69 397 aa7.04□□□□□ -1.28
USP4-211ENST00000485450 PRDM7Q9NQW5 492 aa7.04□□□□□ -1.28
USP4-211ENST00000485450 ASIC5Q9NY37 505 aa7.04□□□□□ -1.28
USP4-211ENST00000485450 GSTK1Q9Y2Q3 226 aa7.04□□□□□ -1.28
USP4-211ENST00000485450 CHST2Q9Y4C5 530 aa7.04□□□□□ -1.28
USP4-211ENST00000485450 A0A0A6YYC8 382 aaPredicted RBP7.03□□□□□ -1.28
USP4-211ENST00000485450 VSTM2BA6NLU5 285 aa7.03□□□□□ -1.28
USP4-211ENST00000485450 IQCF5A8MTL0 148 aa7.03□□□□□ -1.28
USP4-211ENST00000485450 C9orf172C9J069 976 aa7.03□□□□□ -1.28
USP4-211ENST00000485450 I3L1I5 382 aaPredicted RBP7.03□□□□□ -1.28
USP4-211ENST00000485450 ENTPD6O75354 484 aa7.03□□□□□ -1.28
USP4-211ENST00000485450 RP2O75695 350 aa7.03□□□□□ -1.28
USP4-211ENST00000485450 OR8G3PP0DMU2 310 aa7.03□□□□□ -1.28
USP4-211ENST00000485450 FOLR2P14207 255 aa7.03□□□□□ -1.28
USP4-211ENST00000485450 GALNSP34059 522 aa7.03□□□□□ -1.28
USP4-211ENST00000485450 RBP2P50120 134 aa7.03□□□□□ -1.28
USP4-211ENST00000485450 SNRPGP62308 76 aaKnown RBP7.03□□□□□ -1.28
USP4-211ENST00000485450 RPL38P63173 70 aaKnown RBP7.03□□□□□ -1.28
USP4-211ENST00000485450 TNFRSF17Q02223 184 aa7.03□□□□□ -1.28
USP4-211ENST00000485450 MINDY4Q4G0A6 757 aa7.03□□□□□ -1.28
USP4-211ENST00000485450 CCDC157Q569K6 752 aa7.03□□□□□ -1.28
USP4-211ENST00000485450 ZNF542PQ5EBM4 170 aa7.03□□□□□ -1.28
USP4-211ENST00000485450 TMEM201Q5SNT2 666 aa7.03□□□□□ -1.28
USP4-211ENST00000485450 AVPI1Q5T686 147 aa7.03□□□□□ -1.28
USP4-211ENST00000485450 TSEN54Q7Z6J9 526 aaKnown RBP7.03□□□□□ -1.28
USP4-211ENST00000485450 KRTCAP2Q8N6L1 136 aa7.03□□□□□ -1.28
USP4-211ENST00000485450 POMGNT2Q8NAT1 580 aa7.03□□□□□ -1.28
USP4-211ENST00000485450 FAM46DQ8NEK8 389 aa7.03□□□□□ -1.28
USP4-211ENST00000485450 OR2L3Q8NG85 312 aa7.03□□□□□ -1.28
USP4-211ENST00000485450 OR52B6Q8NGF0 335 aa7.03□□□□□ -1.28
USP4-211ENST00000485450 WFDC12Q8WWY7 111 aa7.03□□□□□ -1.28
USP4-211ENST00000485450 TMEM203Q969S6 136 aa7.03□□□□□ -1.28
USP4-211ENST00000485450 SAP130Q9H0E3 1048 aa7.03□□□□□ -1.28
USP4-211ENST00000485450 SYNPO2LQ9H987 977 aa7.03□□□□□ -1.28
USP4-211ENST00000485450 NDUFAF4Q9P032 175 aa7.03□□□□□ -1.28
USP4-211ENST00000485450 A0A1B0GW55 424 aa7.03□□□□□ -1.28
USP4-211ENST00000485450 URADA6NGE7 173 aa7.03□□□□□ -1.28
USP4-211ENST00000485450 A8MXE2 369 aa7.03□□□□□ -1.28
USP4-211ENST00000485450 DUX4L2P0CJ85 424 aa7.03□□□□□ -1.28
USP4-211ENST00000485450 DUX4L3P0CJ86 424 aa7.03□□□□□ -1.28
USP4-211ENST00000485450 DUX4L4P0CJ87 422 aa7.03□□□□□ -1.28
USP4-211ENST00000485450 DUX4L5P0CJ88 424 aa7.03□□□□□ -1.28
USP4-211ENST00000485450 DUX4L6P0CJ89 424 aa7.03□□□□□ -1.28
USP4-211ENST00000485450 DUX4L7P0CJ90 424 aa7.03□□□□□ -1.28
USP4-211ENST00000485450 NPPBP16860 134 aa7.03□□□□□ -1.28
USP4-211ENST00000485450 S100A11P31949 105 aa7.03□□□□□ -1.28
USP4-211ENST00000485450 TSFMP43897 325 aaKnown RBP7.03□□□□□ -1.28
USP4-211ENST00000485450 NOVA1P51513 510 aaKnown RBP7.03□□□□□ -1.28
USP4-211ENST00000485450 CARD18P57730 90 aa7.03□□□□□ -1.28
USP4-211ENST00000485450 IL2P60568 153 aa7.03□□□□□ -1.28
USP4-211ENST00000485450 RBBP4Q09028 425 aa7.03□□□□□ -1.28
USP4-211ENST00000485450 C1orf61Q13536 156 aa7.03□□□□□ -1.28
USP4-211ENST00000485450 GUCA2BQ16661 112 aa7.03□□□□□ -1.28
USP4-211ENST00000485450 RNF212Q495C1 297 aa7.03□□□□□ -1.28
USP4-211ENST00000485450 DOK6Q6PKX4 331 aa7.03□□□□□ -1.28
USP4-211ENST00000485450 CD200R1LQ6Q8B3 271 aa7.03□□□□□ -1.28
USP4-211ENST00000485450 FJX1Q86VR8 437 aa7.03□□□□□ -1.28
USP4-211ENST00000485450 TMEM17Q86X19 198 aa7.03□□□□□ -1.28
USP4-211ENST00000485450 CMIPQ8IY22 773 aa7.03□□□□□ -1.28
USP4-211ENST00000485450 BPIFCQ8NFQ6 507 aa7.03□□□□□ -1.28
USP4-211ENST00000485450 MVB12AQ96EY5 273 aa7.03□□□□□ -1.28
USP4-211ENST00000485450 C12orf66Q96MD2 445 aa7.03□□□□□ -1.28
USP4-211ENST00000485450 MS4A4EQ96PG1 132 aa7.03□□□□□ -1.28
USP4-211ENST00000485450 CDK15Q96Q40 435 aa7.03□□□□□ -1.28
USP4-211ENST00000485450 OR2A5Q96R48 311 aa7.03□□□□□ -1.28
USP4-211ENST00000485450 TAAR9Q96RI9 348 aa7.03□□□□□ -1.28
USP4-211ENST00000485450 INPP5KQ9BT40 448 aa7.03□□□□□ -1.28
USP4-211ENST00000485450 MRPS30Q9NP92 439 aaKnown RBP7.03□□□□□ -1.28
USP4-211ENST00000485450 IMP3Q9NV31 184 aaKnown RBP7.03□□□□□ -1.28
USP4-211ENST00000485450 MED11Q9P086 117 aa7.03□□□□□ -1.28
USP4-211ENST00000485450 DUX4Q9UBX2 424 aa7.03□□□□□ -1.28
USP4-211ENST00000485450 MRTO4Q9UKD2 239 aaKnown RBP7.03□□□□□ -1.28
USP4-211ENST00000485450 SYNDIG1LA6NDD5 238 aa7.02□□□□□ -1.28
USP4-211ENST00000485450 OR52A4PA6NMU1 304 aa7.02□□□□□ -1.28
USP4-211ENST00000485450 CASKO14936 926 aa7.02□□□□□ -1.28
USP4-211ENST00000485450 PPP3CBP16298 524 aa7.02□□□□□ -1.28
USP4-211ENST00000485450 ELK1P19419 428 aa7.02□□□□□ -1.28
USP4-211ENST00000485450 CD79BP40259 229 aa7.02□□□□□ -1.28
USP4-211ENST00000485450 CLDN8P56748 225 aa7.02□□□□□ -1.28
USP4-211ENST00000485450 RPS25P62851 125 aaKnown RBP7.02□□□□□ -1.28
USP4-211ENST00000485450 PRDX1Q06830 199 aaKnown RBP7.02□□□□□ -1.28
Retrieved 100 of 20,778 RNA–protein pairs in 36.5 ms