RNA–Protein interactions for RNA: ENST00000484246.5

UPF3A-208, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 3

Gene UPF3A, Length 699 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-208ENST00000484246 FFAR1O14842 300 aa14.04□□□□□ -0.16
UPF3A-208ENST00000484246 TRAF3IP2O43734 574 aaPredicted RBP14.04□□□□□ -0.16
UPF3A-208ENST00000484246 CTAG2O75638 210 aa14.04□□□□□ -0.16
UPF3A-208ENST00000484246 MT-ND1P03886 318 aa14.04□□□□□ -0.16
UPF3A-208ENST00000484246 ASAH2BP0C7U1 165 aa14.04□□□□□ -0.16
UPF3A-208ENST00000484246 CRYGSP22914 178 aa14.04□□□□□ -0.16
UPF3A-208ENST00000484246 SNTB1Q13884 538 aaKnown RBP14.04□□□□□ -0.16
UPF3A-208ENST00000484246 MTX3Q5HYI7 312 aa14.04□□□□□ -0.16
UPF3A-208ENST00000484246 C1QTNF12Q5T7M4 302 aa14.04□□□□□ -0.16
UPF3A-208ENST00000484246 CASP12Q6UXS9 341 aa14.04□□□□□ -0.16
UPF3A-208ENST00000484246 NHLRC1Q6VVB1 395 aa14.04□□□□□ -0.16
UPF3A-208ENST00000484246 RINLQ6ZS11 566 aa14.04□□□□□ -0.16
UPF3A-208ENST00000484246 FKBP9P1Q75LS8 142 aa14.04□□□□□ -0.16
UPF3A-208ENST00000484246 SSX8Q7RTT4 187 aa14.04□□□□□ -0.16
UPF3A-208ENST00000484246 SLC46A3Q7Z3Q1 461 aa14.04□□□□□ -0.16
UPF3A-208ENST00000484246 GPAT4Q86UL3 456 aa14.04□□□□□ -0.16
UPF3A-208ENST00000484246 CXorf67Q86X51 503 aaPredicted RBP14.04□□□□□ -0.16
UPF3A-208ENST00000484246 NKAIN4Q8IVV8 208 aa14.04□□□□□ -0.16
UPF3A-208ENST00000484246 OR5J2Q8NH18 312 aa14.04□□□□□ -0.16
UPF3A-208ENST00000484246 TMEM239Q8WW34 195 aa14.04□□□□□ -0.16
UPF3A-208ENST00000484246 ZNF775Q96BV0 537 aaPredicted RBP14.04□□□□□ -0.16
UPF3A-208ENST00000484246 C7orf34Q96L11 122 aa14.04□□□□□ -0.16
UPF3A-208ENST00000484246 NSMCE2Q96MF7 247 aa14.04□□□□□ -0.16
UPF3A-208ENST00000484246 WFIKKN1Q96NZ8 548 aa14.04□□□□□ -0.16
UPF3A-208ENST00000484246 ACTR6Q9GZN1 396 aa14.04□□□□□ -0.16
UPF3A-208ENST00000484246 TAS2R1Q9NYW7 299 aa14.04□□□□□ -0.16
UPF3A-208ENST00000484246 C6orf203Q9P0P8 240 aaPredicted RBP14.04□□□□□ -0.16
UPF3A-208ENST00000484246 ACTR3BQ9P1U1 418 aa14.04□□□□□ -0.16
UPF3A-208ENST00000484246 SEC14L4Q9UDX3 406 aa14.04□□□□□ -0.16
UPF3A-208ENST00000484246 MYO9AB2RTY4 2548 aa14.04□□□□□ -0.16
UPF3A-208ENST00000484246 PLPP3O14495 311 aa14.03□□□□□ -0.16
UPF3A-208ENST00000484246 ZNF432O94892 652 aa14.03□□□□□ -0.16
UPF3A-208ENST00000484246 UBOX5O94941 541 aa14.03□□□□□ -0.16
UPF3A-208ENST00000484246 ADAP00813 363 aa14.03□□□□□ -0.16
UPF3A-208ENST00000484246 ZNF43P17038 809 aa14.03□□□□□ -0.16
UPF3A-208ENST00000484246 TCN1P20061 433 aaPredicted RBP14.03□□□□□ -0.16
UPF3A-208ENST00000484246 UGT2B15P54855 530 aa14.03□□□□□ -0.16
UPF3A-208ENST00000484246 PUDPQ08623 228 aa14.03□□□□□ -0.16
UPF3A-208ENST00000484246 ZP4Q12836 540 aa14.03□□□□□ -0.16
UPF3A-208ENST00000484246 TRAM2Q15035 370 aa14.03□□□□□ -0.16
UPF3A-208ENST00000484246 IQCCQ4KMZ1 466 aa14.03□□□□□ -0.16
UPF3A-208ENST00000484246 LCN8Q6JVE9 175 aa14.03□□□□□ -0.16
UPF3A-208ENST00000484246 AAED1Q7RTV5 226 aa14.03□□□□□ -0.16
UPF3A-208ENST00000484246 PXKQ7Z7A4 578 aa14.03□□□□□ -0.16
UPF3A-208ENST00000484246 FAM86B1Q8N7N1 296 aa14.03□□□□□ -0.16
UPF3A-208ENST00000484246 POMGNT2Q8NAT1 580 aa14.03□□□□□ -0.16
UPF3A-208ENST00000484246 PIK3C3Q8NEB9 887 aa14.03□□□□□ -0.16
UPF3A-208ENST00000484246 C1orf162Q8NEQ5 155 aaPredicted RBP14.03□□□□□ -0.16
UPF3A-208ENST00000484246 TMEM255BQ8WV15 326 aa14.03□□□□□ -0.16
UPF3A-208ENST00000484246 KISS1RQ969F8 398 aaPredicted RBP14.03□□□□□ -0.16
UPF3A-208ENST00000484246 POP5Q969H6 163 aaKnown RBP14.03□□□□□ -0.16
UPF3A-208ENST00000484246 BOD1Q96IK1 185 aa14.03□□□□□ -0.16
UPF3A-208ENST00000484246 DHRS1Q96LJ7 313 aa14.03□□□□□ -0.16
UPF3A-208ENST00000484246 MED18Q9BUE0 208 aa14.03□□□□□ -0.16
UPF3A-208ENST00000484246 LINC00470Q9BZP3 86 aa14.03□□□□□ -0.16
UPF3A-208ENST00000484246 SLCO5A1Q9H2Y9 848 aa14.03□□□□□ -0.16
UPF3A-208ENST00000484246 RASSF1Q9NS23 344 aa14.03□□□□□ -0.16
UPF3A-208ENST00000484246 ZNF226Q9NYT6 803 aa14.03□□□□□ -0.16
UPF3A-208ENST00000484246 TAS2R16Q9NYV7 291 aa14.03□□□□□ -0.16
UPF3A-208ENST00000484246 NDUFAF4Q9P032 175 aa14.03□□□□□ -0.16
UPF3A-208ENST00000484246 MED31Q9Y3C7 131 aa14.03□□□□□ -0.16
UPF3A-208ENST00000484246 NOX1Q9Y5S8 564 aa14.03□□□□□ -0.16
UPF3A-208ENST00000484246 PKDREJQ9NTG1 2253 aa14.03□□□□□ -0.16
UPF3A-208ENST00000484246 FBN2P35556 2912 aa14.02□□□□□ -0.16
UPF3A-208ENST00000484246 A0A1W2PRQ8 180 aa14.02□□□□□ -0.17
UPF3A-208ENST00000484246 ENO4A6NNW6 628 aa14.02□□□□□ -0.17
UPF3A-208ENST00000484246 LRRN3E7EW58 273 aa14.02□□□□□ -0.17
UPF3A-208ENST00000484246 MS4A18H0YCH9 400 aa14.02□□□□□ -0.17
UPF3A-208ENST00000484246 AKAP8O43823 692 aaKnown RBP14.02□□□□□ -0.17
UPF3A-208ENST00000484246 THBDP07204 575 aa14.02□□□□□ -0.17
UPF3A-208ENST00000484246 TSPAN19P0C672 248 aa14.02□□□□□ -0.17
UPF3A-208ENST00000484246 RHCEP18577 417 aa14.02□□□□□ -0.17
UPF3A-208ENST00000484246 IGHV1-2P23083 117 aa14.02□□□□□ -0.17
UPF3A-208ENST00000484246 PMS2P3Q13401 168 aa14.02□□□□□ -0.17
UPF3A-208ENST00000484246 DGCR6Q14129 220 aa14.02□□□□□ -0.17
UPF3A-208ENST00000484246 MS4A18Q3C1V0 323 aa14.02□□□□□ -0.17
UPF3A-208ENST00000484246 DNAL1Q4LDG9 190 aa14.02□□□□□ -0.17
UPF3A-208ENST00000484246 TSPO2Q5TGU0 170 aa14.02□□□□□ -0.17
UPF3A-208ENST00000484246 CYP4Z1Q86W10 505 aa14.02□□□□□ -0.17
UPF3A-208ENST00000484246 ANKK1Q8NFD2 765 aa14.02□□□□□ -0.17
UPF3A-208ENST00000484246 ACOT11Q8WXI4 607 aaPredicted RBP14.02□□□□□ -0.17
UPF3A-208ENST00000484246 PYURFQ96I23 114 aa14.02□□□□□ -0.17
UPF3A-208ENST00000484246 FNDC11Q9BVV2 318 aa14.02□□□□□ -0.17
UPF3A-208ENST00000484246 NANSQ9NR45 359 aa14.02□□□□□ -0.17
UPF3A-208ENST00000484246 SLC7A10Q9NS82 523 aa14.02□□□□□ -0.17
UPF3A-208ENST00000484246 ASB6Q9NWX5 421 aa14.02□□□□□ -0.17
UPF3A-208ENST00000484246 DEFB108AA8MXU0 73 aa14.01□□□□□ -0.17
UPF3A-208ENST00000484246 J3KTA2 159 aa14.01□□□□□ -0.17
UPF3A-208ENST00000484246 KPNA4O00629 521 aaPredicted RBP14.01□□□□□ -0.17
UPF3A-208ENST00000484246 OR7A10O76100 309 aa14.01□□□□□ -0.17
UPF3A-208ENST00000484246 CH25HO95992 272 aa14.01□□□□□ -0.17
UPF3A-208ENST00000484246 HPRP00739 348 aa14.01□□□□□ -0.17
UPF3A-208ENST00000484246 HRGP04196 525 aa14.01□□□□□ -0.17
UPF3A-208ENST00000484246 NQO1P15559 274 aaKnown RBP14.01□□□□□ -0.17
UPF3A-208ENST00000484246 PTNP21246 168 aa14.01□□□□□ -0.17
UPF3A-208ENST00000484246 IL32P24001 234 aa14.01□□□□□ -0.17
UPF3A-208ENST00000484246 VLDLRP98155 873 aa14.01□□□□□ -0.17
UPF3A-208ENST00000484246 BHLHA15Q7RTS1 189 aaPredicted RBP14.01□□□□□ -0.17
UPF3A-208ENST00000484246 ZC3HAV1Q7Z2W4 902 aaKnown RBP14.01□□□□□ -0.17
UPF3A-208ENST00000484246 P2RY8Q86VZ1 359 aa14.01□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 25.9 ms