RNA–Protein interactions for RNA: ENST00000483216.1

USP40-213, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 4

Gene USP40, Length 641 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-213ENST00000483216 ZNF670Q9BS34 389 aa4.57□□□□□ -1.68
USP40-213ENST00000483216 NIPAL2Q9H841 368 aa4.57□□□□□ -1.68
USP40-213ENST00000483216 SYTL2Q9HCH5 934 aa4.57□□□□□ -1.68
USP40-213ENST00000483216 DYRK4Q9NR20 520 aa4.57□□□□□ -1.68
USP40-213ENST00000483216 AGPAT4Q9NRZ5 378 aa4.57□□□□□ -1.68
USP40-213ENST00000483216 CLEC5AQ9NY25 188 aa4.57□□□□□ -1.68
USP40-213ENST00000483216 PLEK2Q9NYT0 353 aa4.57□□□□□ -1.68
USP40-213ENST00000483216 SEC14L4Q9UDX3 406 aa4.57□□□□□ -1.68
USP40-213ENST00000483216 MARCOQ9UEW3 520 aaPredicted RBP4.57□□□□□ -1.68
USP40-213ENST00000483216 TRMT6Q9UJA5 497 aaKnown RBP4.57□□□□□ -1.68
USP40-213ENST00000483216 KLHL21Q9UJP4 597 aa4.57□□□□□ -1.68
USP40-213ENST00000483216 CFL2Q9Y281 166 aa4.57□□□□□ -1.68
USP40-213ENST00000483216 HEY1Q9Y5J3 304 aa4.57□□□□□ -1.68
USP40-213ENST00000483216 PSME4Q14997 1843 aa4.57□□□□□ -1.68
USP40-213ENST00000483216 CNTNAP1P78357 1384 aa4.56□□□□□ -1.68
USP40-213ENST00000483216 IGLV3-10A0A075B6K4 115 aa4.56□□□□□ -1.68
USP40-213ENST00000483216 C13orf42A0A1B0GVH6 325 aa4.56□□□□□ -1.68
USP40-213ENST00000483216 A0A1W2PRQ8 180 aa4.56□□□□□ -1.68
USP40-213ENST00000483216 FAM92AA1XBS5 289 aa4.56□□□□□ -1.68
USP40-213ENST00000483216 SLC15A5A6NIM6 579 aa4.56□□□□□ -1.68
USP40-213ENST00000483216 MRASO14807 208 aa4.56□□□□□ -1.68
USP40-213ENST00000483216 PHOX2AO14813 284 aa4.56□□□□□ -1.68
USP40-213ENST00000483216 ZW10O43264 779 aa4.56□□□□□ -1.68
USP40-213ENST00000483216 CRCPO75575 148 aa4.56□□□□□ -1.68
USP40-213ENST00000483216 UGT2B17O75795 530 aa4.56□□□□□ -1.68
USP40-213ENST00000483216 MFN2O95140 757 aa4.56□□□□□ -1.68
USP40-213ENST00000483216 GABARAPO95166 117 aa4.56□□□□□ -1.68
USP40-213ENST00000483216 TNNC2P02585 160 aa4.56□□□□□ -1.68
USP40-213ENST00000483216 SLC4A1P02730 911 aa4.56□□□□□ -1.68
USP40-213ENST00000483216 APRTP07741 180 aa4.56□□□□□ -1.68
USP40-213ENST00000483216 FHP07954 510 aa4.56□□□□□ -1.68
USP40-213ENST00000483216 NCF1P14598 390 aaPredicted RBP4.56□□□□□ -1.68
USP40-213ENST00000483216 XRCC1P18887 633 aaPredicted RBP4.56□□□□□ -1.68
USP40-213ENST00000483216 TNNI1P19237 187 aa4.56□□□□□ -1.68
USP40-213ENST00000483216 UGT2B15P54855 530 aa4.56□□□□□ -1.68
USP40-213ENST00000483216 AIF1P55008 147 aa4.56□□□□□ -1.68
USP40-213ENST00000483216 SNAP25P60880 206 aa4.56□□□□□ -1.68
USP40-213ENST00000483216 PSMC5P62195 406 aa4.56□□□□□ -1.68
USP40-213ENST00000483216 YWHAHQ04917 246 aaPredicted RBP4.56□□□□□ -1.68
USP40-213ENST00000483216 CHRNB3Q05901 458 aa4.56□□□□□ -1.68
USP40-213ENST00000483216 CYP24A1Q07973 514 aa4.56□□□□□ -1.68
USP40-213ENST00000483216 TCP10Q12799 353 aa4.56□□□□□ -1.68
USP40-213ENST00000483216 PMS2P3Q13401 168 aa4.56□□□□□ -1.68
USP40-213ENST00000483216 GK3PQ14409 553 aa4.56□□□□□ -1.68
USP40-213ENST00000483216 NFE2L1Q14494 772 aa4.56□□□□□ -1.68
USP40-213ENST00000483216 PRPSAP1Q14558 356 aa4.56□□□□□ -1.68
USP40-213ENST00000483216 SPHARQ15513 63 aa4.56□□□□□ -1.68
USP40-213ENST00000483216 FAM83EQ2M2I3 478 aa4.56□□□□□ -1.68
USP40-213ENST00000483216 QRICH1Q2TAL8 776 aa4.56□□□□□ -1.68
USP40-213ENST00000483216 ZNF404Q494X3 552 aa4.56□□□□□ -1.68
USP40-213ENST00000483216 HSD17B12Q53GQ0 312 aa4.56□□□□□ -1.68
USP40-213ENST00000483216 VWA2Q5GFL6 755 aa4.56□□□□□ -1.68
USP40-213ENST00000483216 RNLSQ5VYX0 342 aa4.56□□□□□ -1.68
USP40-213ENST00000483216 CAPN13Q6MZZ7 669 aaPredicted RBP4.56□□□□□ -1.68
USP40-213ENST00000483216 TATDN1Q6P1N9 297 aa4.56□□□□□ -1.68
USP40-213ENST00000483216 NEK5Q6P3R8 708 aa4.56□□□□□ -1.68
USP40-213ENST00000483216 ZYG11AQ6WRX3 759 aa4.56□□□□□ -1.68
USP40-213ENST00000483216 GET4Q7L5D6 327 aaPredicted RBP4.56□□□□□ -1.68
USP40-213ENST00000483216 RAB43Q86YS6 212 aa4.56□□□□□ -1.68
USP40-213ENST00000483216 TCAIMQ8N3R3 496 aa4.56□□□□□ -1.68
USP40-213ENST00000483216 CARNMT1Q8N4J0 409 aa4.56□□□□□ -1.68
USP40-213ENST00000483216 CBR4Q8N4T8 237 aa4.56□□□□□ -1.68
USP40-213ENST00000483216 ZNRF1Q8ND25 227 aa4.56□□□□□ -1.68
USP40-213ENST00000483216 OR52E4Q8NGH9 312 aa4.56□□□□□ -1.68
USP40-213ENST00000483216 OR6Q1Q8NGQ2 317 aa4.56□□□□□ -1.68
USP40-213ENST00000483216 FIBINQ8TAL6 211 aa4.56□□□□□ -1.68
USP40-213ENST00000483216 ENKURQ8TC29 256 aa4.56□□□□□ -1.68
USP40-213ENST00000483216 DNAJA4Q8WW22 397 aaPredicted RBP4.56□□□□□ -1.68
USP40-213ENST00000483216 ITLN1Q8WWA0 313 aa4.56□□□□□ -1.68
USP40-213ENST00000483216 GIMAP1Q8WWP7 306 aa4.56□□□□□ -1.68
USP40-213ENST00000483216 GGHQ92820 318 aa4.56□□□□□ -1.68
USP40-213ENST00000483216 ULK4Q96C45 1275 aa4.56□□□□□ -1.68
USP40-213ENST00000483216 RCN3Q96D15 328 aa4.56□□□□□ -1.68
USP40-213ENST00000483216 ZHX1-C8orf76Q96EF9 292 aa4.56□□□□□ -1.68
USP40-213ENST00000483216 VPS39Q96JC1 886 aa4.56□□□□□ -1.68
USP40-213ENST00000483216 NSMCE2Q96MF7 247 aa4.56□□□□□ -1.68
USP40-213ENST00000483216 ZNF578Q96N58 590 aaPredicted RBP4.56□□□□□ -1.68
USP40-213ENST00000483216 CIB1Q99828 191 aa4.56□□□□□ -1.68
USP40-213ENST00000483216 SSX3Q99909 188 aa4.56□□□□□ -1.68
USP40-213ENST00000483216 MRPL57Q9BQC6 102 aaKnown RBP4.56□□□□□ -1.68
USP40-213ENST00000483216 C11orf70Q9BRQ4 267 aa4.56□□□□□ -1.68
USP40-213ENST00000483216 UQCC2Q9BRT2 126 aa4.56□□□□□ -1.68
USP40-213ENST00000483216 FEM1AQ9BSK4 669 aa4.56□□□□□ -1.68
USP40-213ENST00000483216 KIFC1Q9BW19 673 aa4.56□□□□□ -1.68
USP40-213ENST00000483216 ACAT2Q9BWD1 397 aa4.56□□□□□ -1.68
USP40-213ENST00000483216 ACPTQ9BZG2 426 aa4.56□□□□□ -1.68
USP40-213ENST00000483216 KAT8Q9H7Z6 458 aaKnown RBP4.56□□□□□ -1.68
USP40-213ENST00000483216 NANOGQ9H9S0 305 aa4.56□□□□□ -1.68
USP40-213ENST00000483216 FANCEQ9HB96 536 aa4.56□□□□□ -1.68
USP40-213ENST00000483216 C12orf4Q9NQ89 552 aa4.56□□□□□ -1.68
USP40-213ENST00000483216 COMMD8Q9NX08 183 aa4.56□□□□□ -1.68
USP40-213ENST00000483216 SLC39A1Q9NY26 324 aa4.56□□□□□ -1.68
USP40-213ENST00000483216 B3GNT2Q9NY97 397 aa4.56□□□□□ -1.68
USP40-213ENST00000483216 RABL2AQ9UBK7 228 aaPredicted RBP4.56□□□□□ -1.68
USP40-213ENST00000483216 ZNF107Q9UII5 783 aaPredicted RBP4.56□□□□□ -1.68
USP40-213ENST00000483216 ZNF346Q9UL40 294 aaKnown RBP4.56□□□□□ -1.68
USP40-213ENST00000483216 VANGL2Q9ULK5 521 aa4.56□□□□□ -1.68
USP40-213ENST00000483216 RNF11Q9Y3C5 154 aa4.56□□□□□ -1.68
USP40-213ENST00000483216 ADAMTS9Q9P2N4 1935 aa4.56□□□□□ -1.68
USP40-213ENST00000483216 CCDC182A6NF36 153 aa4.55□□□□□ -1.68
Retrieved 100 of 20,778 RNA–protein pairs in 38.6 ms