RNA–Protein interactions for RNA: ENST00000473405.1

CCDC88B-206, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best)

Gene CCDC88B, Length 783 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-206ENST00000473405 LRRC8CQ8TDW0 803 aa16.39■□□□□ 0.21
CCDC88B-206ENST00000473405 BCL2L2Q92843 193 aaPredicted RBP16.39■□□□□ 0.21
CCDC88B-206ENST00000473405 SLC25A36Q96CQ1 311 aa16.39■□□□□ 0.21
CCDC88B-206ENST00000473405 SLC38A2Q96QD8 506 aa16.39■□□□□ 0.21
CCDC88B-206ENST00000473405 CCDC28BQ9BUN5 200 aa16.39■□□□□ 0.21
CCDC88B-206ENST00000473405 LINC00470Q9BZP3 86 aa16.39■□□□□ 0.21
CCDC88B-206ENST00000473405 C12orf10Q9HB07 376 aa16.39■□□□□ 0.21
CCDC88B-206ENST00000473405 RTTNQ86VV8 2226 aa16.39■□□□□ 0.21
CCDC88B-206ENST00000473405 ARPC4-TTLL3A0A0A6YYG9 625 aa16.38■□□□□ 0.21
CCDC88B-206ENST00000473405 OR6C65A6NJZ3 312 aa16.38■□□□□ 0.21
CCDC88B-206ENST00000473405 TLX2O43763 284 aaPredicted RBP16.38■□□□□ 0.21
CCDC88B-206ENST00000473405 TPST1O60507 370 aa16.38■□□□□ 0.21
CCDC88B-206ENST00000473405 APOBEC3AP31941 199 aaPredicted RBP16.38■□□□□ 0.21
CCDC88B-206ENST00000473405 AQP5P55064 265 aa16.38■□□□□ 0.21
CCDC88B-206ENST00000473405 MST1LQ2TV78 715 aa16.38■□□□□ 0.21
CCDC88B-206ENST00000473405 GLIPR1L2Q4G1C9 344 aa16.38■□□□□ 0.21
CCDC88B-206ENST00000473405 TTMPQ5BVD1 217 aa16.38■□□□□ 0.21
CCDC88B-206ENST00000473405 REEP3Q6NUK4 255 aa16.38■□□□□ 0.21
CCDC88B-206ENST00000473405 DHRS4L2Q6PKH6 230 aa16.38■□□□□ 0.21
CCDC88B-206ENST00000473405 TAAR8Q969N4 342 aa16.38■□□□□ 0.21
CCDC88B-206ENST00000473405 PRR14Q9BWN1 585 aa16.38■□□□□ 0.21
CCDC88B-206ENST00000473405 RCE1Q9Y256 329 aa16.38■□□□□ 0.21
CCDC88B-206ENST00000473405 M0R082 166 aa16.37■□□□□ 0.21
CCDC88B-206ENST00000473405 LY6HO94772 140 aa16.37■□□□□ 0.21
CCDC88B-206ENST00000473405 CLDN17P56750 224 aa16.37■□□□□ 0.21
CCDC88B-206ENST00000473405 DSCR9P59020 149 aa16.37■□□□□ 0.21
CCDC88B-206ENST00000473405 TUBA1BP68363 451 aa16.37■□□□□ 0.21
CCDC88B-206ENST00000473405 TUBA4AP68366 448 aa16.37■□□□□ 0.21
CCDC88B-206ENST00000473405 CDK6Q00534 326 aa16.37■□□□□ 0.21
CCDC88B-206ENST00000473405 ROR2Q01974 943 aaKnown RBP16.37■□□□□ 0.21
CCDC88B-206ENST00000473405 ADRM1Q16186 407 aa16.37■□□□□ 0.21
CCDC88B-206ENST00000473405 SWI5Q1ZZU3 235 aa16.37■□□□□ 0.21
CCDC88B-206ENST00000473405 TUBA1AQ71U36 451 aa16.37■□□□□ 0.21
CCDC88B-206ENST00000473405 ZNF417Q8TAU3 575 aa16.37■□□□□ 0.21
CCDC88B-206ENST00000473405 MAGEE2Q8TD90 523 aaPredicted RBP16.37■□□□□ 0.21
CCDC88B-206ENST00000473405 ATP6V1G3Q96LB4 118 aa16.37■□□□□ 0.21
CCDC88B-206ENST00000473405 ZNF587Q96SQ5 575 aaPredicted RBP16.37■□□□□ 0.21
CCDC88B-206ENST00000473405 KLHL14Q9P2G3 628 aa16.37■□□□□ 0.21
CCDC88B-206ENST00000473405 CRNNQ9UBG3 495 aaPredicted RBP16.37■□□□□ 0.21
CCDC88B-206ENST00000473405 RPS6KB2Q9UBS0 482 aa16.37■□□□□ 0.21
CCDC88B-206ENST00000473405 A0A096LPE4 126 aa16.36■□□□□ 0.21
CCDC88B-206ENST00000473405 A0A1W2PPZ6 126 aa16.36■□□□□ 0.21
CCDC88B-206ENST00000473405 RPL36A-HNRNPH2H7BZ11 118 aa16.36■□□□□ 0.21
CCDC88B-206ENST00000473405 TRAF3IP2O43734 574 aaPredicted RBP16.36■□□□□ 0.21
CCDC88B-206ENST00000473405 ZNF43P17038 809 aa16.36■□□□□ 0.21
CCDC88B-206ENST00000473405 GPX2P18283 190 aa16.36■□□□□ 0.21
CCDC88B-206ENST00000473405 PPIBP23284 216 aaKnown RBP16.36■□□□□ 0.21
CCDC88B-206ENST00000473405 GTF2E2P29084 291 aaKnown RBP16.36■□□□□ 0.21
CCDC88B-206ENST00000473405 ATP4BP51164 291 aa16.36■□□□□ 0.21
CCDC88B-206ENST00000473405 SH3BGRP55822 239 aaPredicted RBP16.36■□□□□ 0.21
CCDC88B-206ENST00000473405 AGKQ53H12 422 aa16.36■□□□□ 0.21
CCDC88B-206ENST00000473405 ALG10BQ5I7T1 473 aa16.36■□□□□ 0.21
CCDC88B-206ENST00000473405 FAM69AQ5T7M9 428 aa16.36■□□□□ 0.21
CCDC88B-206ENST00000473405 ANKRD16Q6P6B7 361 aa16.36■□□□□ 0.21
CCDC88B-206ENST00000473405 C5orf46Q6UWT4 87 aa16.36■□□□□ 0.21
CCDC88B-206ENST00000473405 DLEU7Q6UYE1 221 aa16.36■□□□□ 0.21
CCDC88B-206ENST00000473405 MYPOPQ86VE0 399 aaPredicted RBP16.36■□□□□ 0.21
CCDC88B-206ENST00000473405 KRT73Q86Y46 540 aa16.36■□□□□ 0.21
CCDC88B-206ENST00000473405 C10orf105Q8TEF2 133 aa16.36■□□□□ 0.21
CCDC88B-206ENST00000473405 DNAJA4Q8WW22 397 aaPredicted RBP16.36■□□□□ 0.21
CCDC88B-206ENST00000473405 NANOS1Q8WY41 292 aaKnown RBP16.36■□□□□ 0.21
CCDC88B-206ENST00000473405 SLC38A4Q969I6 547 aa16.36■□□□□ 0.21
CCDC88B-206ENST00000473405 OXGR1Q96P68 337 aa16.36■□□□□ 0.21
CCDC88B-206ENST00000473405 ZNF317Q96PQ6 595 aaPredicted RBP16.36■□□□□ 0.21
CCDC88B-206ENST00000473405 WFDC6Q9BQY6 131 aa16.36■□□□□ 0.21
CCDC88B-206ENST00000473405 CPPED1Q9BRF8 314 aaPredicted RBP16.36■□□□□ 0.21
CCDC88B-206ENST00000473405 KATNB1Q9BVA0 655 aa16.36■□□□□ 0.21
CCDC88B-206ENST00000473405 TMEM38AQ9H6F2 299 aa16.36■□□□□ 0.21
CCDC88B-206ENST00000473405 SEC61A2Q9H9S3 476 aa16.36■□□□□ 0.21
CCDC88B-206ENST00000473405 YAE1D1Q9NRH1 226 aa16.36■□□□□ 0.21
CCDC88B-206ENST00000473405 TRAV36DV7A0A075B6V5 113 aa16.35■□□□□ 0.21
CCDC88B-206ENST00000473405 AIM2O14862 343 aa16.35■□□□□ 0.21
CCDC88B-206ENST00000473405 TPST2O60704 377 aa16.35■□□□□ 0.21
CCDC88B-206ENST00000473405 IGLV1-44P01699 117 aa16.35■□□□□ 0.21
CCDC88B-206ENST00000473405 CECR9P0C854 216 aa16.35■□□□□ 0.21
CCDC88B-206ENST00000473405 GRPRP30550 384 aa16.35■□□□□ 0.21
CCDC88B-206ENST00000473405 EFNA4P52798 201 aa16.35■□□□□ 0.21
CCDC88B-206ENST00000473405 CHRNB3Q05901 458 aa16.35■□□□□ 0.21
CCDC88B-206ENST00000473405 LOXL1Q08397 574 aaPredicted RBP16.35■□□□□ 0.21
CCDC88B-206ENST00000473405 SCARB2Q14108 478 aa16.35■□□□□ 0.21
CCDC88B-206ENST00000473405 TMEM249Q2WGJ8 235 aa16.35■□□□□ 0.21
CCDC88B-206ENST00000473405 FAM91A1Q658Y4 838 aa16.35■□□□□ 0.21
CCDC88B-206ENST00000473405 HMBOX1Q6NT76 420 aa16.35■□□□□ 0.21
CCDC88B-206ENST00000473405 ULK3Q6PHR2 472 aa16.35■□□□□ 0.21
CCDC88B-206ENST00000473405 TMEM123Q8N131 208 aa16.35■□□□□ 0.21
CCDC88B-206ENST00000473405 ANKK1Q8NFD2 765 aa16.35■□□□□ 0.21
CCDC88B-206ENST00000473405 FAM168AQ92567 244 aa16.35■□□□□ 0.21
CCDC88B-206ENST00000473405 FBXO17Q96EF6 278 aa16.35■□□□□ 0.21
CCDC88B-206ENST00000473405 ZNF837Q96EG3 531 aaPredicted RBP16.35■□□□□ 0.21
CCDC88B-206ENST00000473405 OR2M2Q96R28 347 aa16.35■□□□□ 0.21
CCDC88B-206ENST00000473405 TNFRSF13CQ96RJ3 184 aa16.35■□□□□ 0.21
CCDC88B-206ENST00000473405 SPATA5L1Q9BVQ7 753 aa16.35■□□□□ 0.21
CCDC88B-206ENST00000473405 CA10Q9NS85 328 aa16.35■□□□□ 0.21
CCDC88B-206ENST00000473405 TESQ9UGI8 421 aaKnown RBP16.35■□□□□ 0.21
CCDC88B-206ENST00000473405 MALRD1Q5VYJ5 2156 aa16.35■□□□□ 0.21
CCDC88B-206ENST00000473405 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP16.35■□□□□ 0.21
CCDC88B-206ENST00000473405 A0A0B4J2E0 115 aa16.34■□□□□ 0.21
CCDC88B-206ENST00000473405 LOC102725191A0A1B0GVB3 256 aa16.34■□□□□ 0.21
CCDC88B-206ENST00000473405 A0A1B0GX12 115 aa16.34■□□□□ 0.21
CCDC88B-206ENST00000473405 ZNF503-AS2A6NEH8 195 aa16.34■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 26.5 ms