RNA–Protein interactions for RNA: ENST00000473191.1

USP40-212, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 3

Gene USP40, Length 590 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-212ENST00000473191 PRPS1P60891 318 aa14.54□□□□□ -0.08
USP40-212ENST00000473191 ETFDHQ16134 617 aa14.54□□□□□ -0.08
USP40-212ENST00000473191 ZSWIM7Q19AV6 140 aa14.54□□□□□ -0.08
USP40-212ENST00000473191 MST1LQ2TV78 715 aa14.54□□□□□ -0.08
USP40-212ENST00000473191 RUNDC3AQ59EK9 446 aa14.54□□□□□ -0.08
USP40-212ENST00000473191 ALG10BQ5I7T1 473 aa14.54□□□□□ -0.08
USP40-212ENST00000473191 SSX8Q7RTT4 187 aa14.54□□□□□ -0.08
USP40-212ENST00000473191 FBXL14Q8N1E6 418 aa14.54□□□□□ -0.08
USP40-212ENST00000473191 ZNF525Q8N782 197 aa14.54□□□□□ -0.08
USP40-212ENST00000473191 CKAP2Q8WWK9 683 aa14.54□□□□□ -0.08
USP40-212ENST00000473191 BCL2L2Q92843 193 aaPredicted RBP14.54□□□□□ -0.08
USP40-212ENST00000473191 MDFIQ99750 246 aa14.54□□□□□ -0.08
USP40-212ENST00000473191 TMEM38AQ9H6F2 299 aa14.54□□□□□ -0.08
USP40-212ENST00000473191 INTS9Q9NV88 658 aaKnown RBP14.54□□□□□ -0.08
USP40-212ENST00000473191 ALPK2Q86TB3 2170 aa14.53□□□□□ -0.08
USP40-212ENST00000473191 MS4A18H0YCH9 400 aa14.53□□□□□ -0.08
USP40-212ENST00000473191 M0R3H8 397 aa14.53□□□□□ -0.08
USP40-212ENST00000473191 SASH3O75995 380 aa14.53□□□□□ -0.08
USP40-212ENST00000473191 KRT33AO76009 404 aa14.53□□□□□ -0.08
USP40-212ENST00000473191 SEC14L2O76054 403 aa14.53□□□□□ -0.08
USP40-212ENST00000473191 MFN2O95140 757 aa14.53□□□□□ -0.08
USP40-212ENST00000473191 NUDT6P53370 316 aa14.53□□□□□ -0.08
USP40-212ENST00000473191 ROR2Q01974 943 aaKnown RBP14.53□□□□□ -0.08
USP40-212ENST00000473191 TGFBR3Q03167 851 aa14.53□□□□□ -0.08
USP40-212ENST00000473191 OR1Q1Q15612 314 aa14.53□□□□□ -0.08
USP40-212ENST00000473191 MS4A18Q3C1V0 323 aa14.53□□□□□ -0.08
USP40-212ENST00000473191 TSPYL5Q86VY4 417 aaPredicted RBP14.53□□□□□ -0.08
USP40-212ENST00000473191 GPR32P1Q8NGA4 272 aa14.53□□□□□ -0.08
USP40-212ENST00000473191 OR10H5Q8NGA6 315 aa14.53□□□□□ -0.08
USP40-212ENST00000473191 OR4D11Q8NGI4 311 aa14.53□□□□□ -0.08
USP40-212ENST00000473191 SLC35B4Q969S0 331 aa14.53□□□□□ -0.08
USP40-212ENST00000473191 BOD1Q96IK1 185 aa14.53□□□□□ -0.08
USP40-212ENST00000473191 MOGAT1Q96PD6 335 aa14.53□□□□□ -0.08
USP40-212ENST00000473191 PIF1Q9H611 641 aa14.53□□□□□ -0.08
USP40-212ENST00000473191 TMEM45AQ9NWC5 275 aa14.53□□□□□ -0.08
USP40-212ENST00000473191 KLHL14Q9P2G3 628 aa14.53□□□□□ -0.08
USP40-212ENST00000473191 RPS6KB2Q9UBS0 482 aa14.53□□□□□ -0.08
USP40-212ENST00000473191 ABCA2Q9BZC7 2435 aa14.53□□□□□ -0.08
USP40-212ENST00000473191 HEATR1Q9H583 2144 aaKnown RBP14.53□□□□□ -0.08
USP40-212ENST00000473191 A0A0B4J2E0 115 aa14.52□□□□□ -0.09
USP40-212ENST00000473191 A0A1B0GX12 115 aa14.52□□□□□ -0.09
USP40-212ENST00000473191 ZNF587BE7ETH6 402 aa14.52□□□□□ -0.09
USP40-212ENST00000473191 TRAF3IP2O43734 574 aaPredicted RBP14.52□□□□□ -0.09
USP40-212ENST00000473191 VAMP5O95183 116 aa14.52□□□□□ -0.09
USP40-212ENST00000473191 THY1P04216 161 aa14.52□□□□□ -0.09
USP40-212ENST00000473191 ZNF43P17038 809 aa14.52□□□□□ -0.09
USP40-212ENST00000473191 CALCRP30988 508 aa14.52□□□□□ -0.09
USP40-212ENST00000473191 PPP2R2BQ00005 443 aa14.52□□□□□ -0.09
USP40-212ENST00000473191 SF3A3Q12874 501 aaKnown RBP eCLIP14.52□□□□□ -0.095e-6■■■■■ 39.5
USP40-212ENST00000473191 NPTX1Q15818 432 aa14.52□□□□□ -0.09
USP40-212ENST00000473191 DUSP7Q16829 419 aa14.52□□□□□ -0.09
USP40-212ENST00000473191 FAM69AQ5T7M9 428 aa14.52□□□□□ -0.09
USP40-212ENST00000473191 RBM45Q8IUH3 476 aaKnown RBP14.52□□□□□ -0.09
USP40-212ENST00000473191 RNF217Q8TC41 542 aa14.52□□□□□ -0.09
USP40-212ENST00000473191 NANOS1Q8WY41 292 aaKnown RBP14.52□□□□□ -0.09
USP40-212ENST00000473191 SLC38A4Q969I6 547 aa14.52□□□□□ -0.09
USP40-212ENST00000473191 MAGEB18Q96M61 343 aa14.52□□□□□ -0.09
USP40-212ENST00000473191 OXGR1Q96P68 337 aa14.52□□□□□ -0.09
USP40-212ENST00000473191 EMC6Q9BV81 110 aa14.52□□□□□ -0.09
USP40-212ENST00000473191 LINC00470Q9BZP3 86 aa14.52□□□□□ -0.09
USP40-212ENST00000473191 C12orf10Q9HB07 376 aa14.52□□□□□ -0.09
USP40-212ENST00000473191 NPHS2Q9NP85 383 aa14.52□□□□□ -0.09
USP40-212ENST00000473191 TRAV36DV7A0A075B6V5 113 aa14.51□□□□□ -0.09
USP40-212ENST00000473191 A0A087WUJ7 227 aa14.51□□□□□ -0.09
USP40-212ENST00000473191 BGLAPP02818 100 aa14.51□□□□□ -0.09
USP40-212ENST00000473191 CECR9P0C854 216 aa14.51□□□□□ -0.09
USP40-212ENST00000473191 SLC6A2P23975 617 aa14.51□□□□□ -0.09
USP40-212ENST00000473191 GTF2E2P29084 291 aaKnown RBP14.51□□□□□ -0.09
USP40-212ENST00000473191 CDH12P55289 794 aa14.51□□□□□ -0.09
USP40-212ENST00000473191 PCBP3P57721 371 aaKnown RBP14.51□□□□□ -0.09
USP40-212ENST00000473191 RGS8P57771 180 aaPredicted RBP14.51□□□□□ -0.09
USP40-212ENST00000473191 ARF1P84077 181 aaKnown RBP14.51□□□□□ -0.09
USP40-212ENST00000473191 CARD17Q5XLA6 110 aa14.51□□□□□ -0.09
USP40-212ENST00000473191 ZNF544Q6NX49 715 aa14.51□□□□□ -0.09
USP40-212ENST00000473191 KLHL24Q6TFL4 600 aa14.51□□□□□ -0.09
USP40-212ENST00000473191 NHLRC1Q6VVB1 395 aa14.51□□□□□ -0.09
USP40-212ENST00000473191 WDR88Q6ZMY6 472 aa14.51□□□□□ -0.09
USP40-212ENST00000473191 DHDDSQ86SQ9 333 aa14.51□□□□□ -0.09
USP40-212ENST00000473191 ARMC8Q8IUR7 673 aa14.51□□□□□ -0.09
USP40-212ENST00000473191 DEPDC4Q8N2C3 294 aa14.51□□□□□ -0.09
USP40-212ENST00000473191 HIPK4Q8NE63 616 aa14.51□□□□□ -0.09
USP40-212ENST00000473191 FBXO17Q96EF6 278 aa14.51□□□□□ -0.09
USP40-212ENST00000473191 TXNDC15Q96J42 360 aa14.51□□□□□ -0.09
USP40-212ENST00000473191 ADAD1Q96M93 576 aaKnown RBP14.51□□□□□ -0.09
USP40-212ENST00000473191 ANKRD27Q96NW4 1050 aa14.51□□□□□ -0.09
USP40-212ENST00000473191 SLC38A2Q96QD8 506 aa14.51□□□□□ -0.09
USP40-212ENST00000473191 OR2M2Q96R28 347 aa14.51□□□□□ -0.09
USP40-212ENST00000473191 GPR35Q9HC97 309 aa14.51□□□□□ -0.09
USP40-212ENST00000473191 PRDM4Q9UKN5 801 aa14.51□□□□□ -0.09
USP40-212ENST00000473191 EVPLLA8MZ36 301 aa14.5□□□□□ -0.09
USP40-212ENST00000473191 HMGB1P1B2RPK0 211 aaPredicted RBP14.5□□□□□ -0.09
USP40-212ENST00000473191 H7C417 338 aa14.5□□□□□ -0.09
USP40-212ENST00000473191 AIM2O14862 343 aa14.5□□□□□ -0.09
USP40-212ENST00000473191 EDF1O60869 148 aaKnown RBP14.5□□□□□ -0.09
USP40-212ENST00000473191 CRLF1O75462 422 aa14.5□□□□□ -0.09
USP40-212ENST00000473191 WNT11O96014 354 aa14.5□□□□□ -0.09
USP40-212ENST00000473191 H2AFXP16104 143 aaPredicted RBP14.5□□□□□ -0.09
USP40-212ENST00000473191 PPIBP23284 216 aaKnown RBP14.5□□□□□ -0.09
USP40-212ENST00000473191 APOBEC3AP31941 199 aaPredicted RBP14.5□□□□□ -0.09
USP40-212ENST00000473191 IL1RL1Q01638 556 aa14.5□□□□□ -0.09
Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms