RNA–Protein interactions for RNA: ENST00000456975.1

CCDC88A-209, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 2

Gene CCDC88A, Length 2,208 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-209ENST00000456975 COQ10AQ96MF6 247 aa4.38□□□□□ -1.71
CCDC88A-209ENST00000456975 ZNF778Q96MU6 729 aa4.38□□□□□ -1.71
CCDC88A-209ENST00000456975 PHB2Q99623 299 aa4.38□□□□□ -1.71
CCDC88A-209ENST00000456975 NDUFAF3Q9BU61 184 aa4.38□□□□□ -1.71
CCDC88A-209ENST00000456975 WFDC1Q9HC57 220 aa4.38□□□□□ -1.71
CCDC88A-209ENST00000456975 LRWD1Q9UFC0 647 aa4.38□□□□□ -1.71
CCDC88A-209ENST00000456975 ZNF337Q9Y3M9 751 aa4.38□□□□□ -1.71
CCDC88A-209ENST00000456975 KIAA1324LA8MWY0 1029 aaPredicted RBP4.38□□□□□ -1.71
CCDC88A-209ENST00000456975 H3BMQ9 156 aa4.38□□□□□ -1.71
CCDC88A-209ENST00000456975 SLC28A1O00337 649 aa4.38□□□□□ -1.71
CCDC88A-209ENST00000456975 BHLHE40O14503 412 aa4.38□□□□□ -1.71
CCDC88A-209ENST00000456975 CDIPTO14735 213 aa4.38□□□□□ -1.71
CCDC88A-209ENST00000456975 SLC16A4O15374 487 aa4.38□□□□□ -1.71
CCDC88A-209ENST00000456975 CYB5BO43169 146 aa4.38□□□□□ -1.71
CCDC88A-209ENST00000456975 SOX15O60248 233 aa4.38□□□□□ -1.71
CCDC88A-209ENST00000456975 AP2A2O94973 939 aa4.38□□□□□ -1.71
CCDC88A-209ENST00000456975 ARG1P05089 322 aa4.38□□□□□ -1.71
CCDC88A-209ENST00000456975 SPP1P10451 314 aa4.38□□□□□ -1.71
CCDC88A-209ENST00000456975 CA4P22748 312 aa4.38□□□□□ -1.71
CCDC88A-209ENST00000456975 ACKR3P25106 362 aa4.38□□□□□ -1.71
CCDC88A-209ENST00000456975 SPRP35270 261 aaPredicted RBP4.38□□□□□ -1.71
CCDC88A-209ENST00000456975 ACVR1BP36896 505 aa4.38□□□□□ -1.71
CCDC88A-209ENST00000456975 CFHR2P36980 270 aa4.38□□□□□ -1.71
CCDC88A-209ENST00000456975 RGRP47804 291 aa4.38□□□□□ -1.71
CCDC88A-209ENST00000456975 GABRA4P48169 554 aa4.38□□□□□ -1.71
CCDC88A-209ENST00000456975 CSNK1A1P48729 337 aa4.38□□□□□ -1.71
CCDC88A-209ENST00000456975 UFM1P61960 85 aa4.38□□□□□ -1.71
CCDC88A-209ENST00000456975 RPS6P62753 249 aaKnown RBP4.38□□□□□ -1.71
CCDC88A-209ENST00000456975 ST3GAL1Q11201 340 aa4.38□□□□□ -1.71
CCDC88A-209ENST00000456975 AIMP2Q13155 320 aaKnown RBP4.38□□□□□ -1.71
CCDC88A-209ENST00000456975 SKP2Q13309 424 aa4.38□□□□□ -1.71
CCDC88A-209ENST00000456975 GAB1Q13480 694 aa4.38□□□□□ -1.71
CCDC88A-209ENST00000456975 GTF2H2Q13888 395 aa4.38□□□□□ -1.71
CCDC88A-209ENST00000456975 XKR7Q5GH72 579 aa4.38□□□□□ -1.71
CCDC88A-209ENST00000456975 FNBP1LQ5T0N5 605 aa4.38□□□□□ -1.71
CCDC88A-209ENST00000456975 N4BP2L1Q5TBK1 243 aaPredicted RBP4.38□□□□□ -1.71
CCDC88A-209ENST00000456975 LGSNQ5TDP6 509 aa4.38□□□□□ -1.71
CCDC88A-209ENST00000456975 SYPL2Q5VXT5 272 aa4.38□□□□□ -1.71
CCDC88A-209ENST00000456975 GTF2H2CQ6P1K8 395 aa4.38□□□□□ -1.71
CCDC88A-209ENST00000456975 SERPINA13PQ6UXR4 307 aa4.38□□□□□ -1.71
CCDC88A-209ENST00000456975 ZNF782Q6ZMW2 699 aaPredicted RBP4.38□□□□□ -1.71
CCDC88A-209ENST00000456975 ZC3HC1Q86WB0 502 aaKnown RBP4.38□□□□□ -1.71
CCDC88A-209ENST00000456975 TMPRSS6Q8IU80 811 aa4.38□□□□□ -1.71
CCDC88A-209ENST00000456975 ZCCHC9Q8N567 271 aaKnown RBP4.38□□□□□ -1.71
CCDC88A-209ENST00000456975 BCORP1Q8N888 145 aa4.38□□□□□ -1.71
CCDC88A-209ENST00000456975 NUBPLQ8TB37 319 aa4.38□□□□□ -1.71
CCDC88A-209ENST00000456975 LNX1Q8TBB1 728 aaPredicted RBP4.38□□□□□ -1.71
CCDC88A-209ENST00000456975 MARCH1Q8TCQ1 289 aa4.38□□□□□ -1.71
CCDC88A-209ENST00000456975 GPR151Q8TDV0 419 aa4.38□□□□□ -1.71
CCDC88A-209ENST00000456975 CCDC107Q8WV48 283 aa4.38□□□□□ -1.71
CCDC88A-209ENST00000456975 DNASE1L2Q92874 299 aa4.38□□□□□ -1.71
CCDC88A-209ENST00000456975 CREB3L1Q96BA8 519 aa4.38□□□□□ -1.71
CCDC88A-209ENST00000456975 NTNG2Q96CW9 530 aa4.38□□□□□ -1.71
CCDC88A-209ENST00000456975 MS4A14Q96JA4 679 aa4.38□□□□□ -1.71
CCDC88A-209ENST00000456975 PANX3Q96QZ0 392 aa4.38□□□□□ -1.71
CCDC88A-209ENST00000456975 THAP7Q9BT49 309 aaPredicted RBP4.38□□□□□ -1.71
CCDC88A-209ENST00000456975 RNF26Q9BY78 433 aaPredicted RBP4.38□□□□□ -1.71
CCDC88A-209ENST00000456975 COMMD4Q9H0A8 199 aa4.38□□□□□ -1.71
CCDC88A-209ENST00000456975 SIK2Q9H0K1 926 aa4.38□□□□□ -1.71
CCDC88A-209ENST00000456975 DCSTAMPQ9H295 470 aa4.38□□□□□ -1.71
CCDC88A-209ENST00000456975 SLC28A3Q9HAS3 691 aa4.38□□□□□ -1.71
CCDC88A-209ENST00000456975 GPR173Q9NS66 373 aa4.38□□□□□ -1.71
CCDC88A-209ENST00000456975 VNN3Q9NY84 501 aa4.38□□□□□ -1.71
CCDC88A-209ENST00000456975 SEC14L4Q9UDX3 406 aa4.38□□□□□ -1.71
CCDC88A-209ENST00000456975 NDRG4Q9ULP0 352 aaKnown RBP4.38□□□□□ -1.71
CCDC88A-209ENST00000456975 NENFQ9UMX5 172 aa4.38□□□□□ -1.71
CCDC88A-209ENST00000456975 WNT6Q9Y6F9 365 aa4.38□□□□□ -1.71
CCDC88A-209ENST00000456975 PRRC2BQ5JSZ5 2229 aaKnown RBP4.38□□□□□ -1.71
CCDC88A-209ENST00000456975 MYH11P35749 1972 aa4.38□□□□□ -1.71
CCDC88A-209ENST00000456975 LCTP09848 1927 aa4.38□□□□□ -1.71
CCDC88A-209ENST00000456975 SF3B1O75533 1304 aaKnown RBP eCLIP4.37□□□□□ -1.71
CCDC88A-209ENST00000456975 MCM3APO60318 1980 aa4.37□□□□□ -1.71
CCDC88A-209ENST00000456975 UBE2QL1A1L167 161 aa4.37□□□□□ -1.71
CCDC88A-209ENST00000456975 RNASEK-C17orf49H0YIS7 233 aa4.37□□□□□ -1.71
CCDC88A-209ENST00000456975 P2RY10O00398 339 aa4.37□□□□□ -1.71
CCDC88A-209ENST00000456975 PPP6CO00743 305 aa4.37□□□□□ -1.71
CCDC88A-209ENST00000456975 BCAT2O15382 392 aaPredicted RBP4.37□□□□□ -1.71
CCDC88A-209ENST00000456975 UGT2B17O75795 530 aa4.37□□□□□ -1.71
CCDC88A-209ENST00000456975 OR2B3O76000 313 aa4.37□□□□□ -1.71
CCDC88A-209ENST00000456975 KRT33AO76009 404 aa4.37□□□□□ -1.71
CCDC88A-209ENST00000456975 TM7SF2O76062 418 aa4.37□□□□□ -1.71
CCDC88A-209ENST00000456975 TSPAN12O95859 305 aa4.37□□□□□ -1.71
CCDC88A-209ENST00000456975 C6orf47O95873 294 aa4.37□□□□□ -1.71
CCDC88A-209ENST00000456975 ZSCAN5DPP0CG00 497 aa4.37□□□□□ -1.71
CCDC88A-209ENST00000456975 PGAM1P18669 254 aa4.37□□□□□ -1.71
CCDC88A-209ENST00000456975 CSNK2A2P19784 350 aaPredicted RBP4.37□□□□□ -1.71
CCDC88A-209ENST00000456975 COMTP21964 271 aa4.37□□□□□ -1.71
CCDC88A-209ENST00000456975 LORP23490 312 aaPredicted RBP4.37□□□□□ -1.71
CCDC88A-209ENST00000456975 CD82P27701 267 aa4.37□□□□□ -1.71
CCDC88A-209ENST00000456975 CNR2P34972 360 aa4.37□□□□□ -1.71
CCDC88A-209ENST00000456975 TDGF1P3P51864 188 aa4.37□□□□□ -1.71
CCDC88A-209ENST00000456975 PAX5Q02548 391 aa4.37□□□□□ -1.71
CCDC88A-209ENST00000456975 EMX2Q04743 252 aa4.37□□□□□ -1.71
CCDC88A-209ENST00000456975 PMPCAQ10713 525 aa4.37□□□□□ -1.71
CCDC88A-209ENST00000456975 TCF15Q12870 199 aa4.37□□□□□ -1.71
CCDC88A-209ENST00000456975 HNRNPA0Q13151 305 aaKnown RBP4.37□□□□□ -1.71
CCDC88A-209ENST00000456975 PDE7AQ13946 482 aa4.37□□□□□ -1.71
CCDC88A-209ENST00000456975 GK2Q14410 553 aaPredicted RBP4.37□□□□□ -1.71
CCDC88A-209ENST00000456975 ELAVL3Q14576 367 aaKnown RBP4.37□□□□□ -1.71
CCDC88A-209ENST00000456975 CYP1B1Q16678 543 aa4.37□□□□□ -1.71
Retrieved 100 of 20,778 RNA–protein pairs in 22.3 ms