RNA–Protein interactions for RNA: ENST00000455727.6

LDLR-202, Transcript of low density lipoprotein receptor, humanhuman

TSL 2 BASIC

Gene LDLR, Length 2,333 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-202ENST00000455727 SPEM1Q8N4L4 309 aa13.72□□□□□ -0.21
LDLR-202ENST00000455727 TRIM63Q969Q1 353 aa13.72□□□□□ -0.21
LDLR-202ENST00000455727 RFT1Q96AA3 541 aa13.72□□□□□ -0.21
LDLR-202ENST00000455727 ZNF524Q96C55 264 aa13.72□□□□□ -0.21
LDLR-202ENST00000455727 CMTM3Q96MX0 182 aa13.72□□□□□ -0.21
LDLR-202ENST00000455727 FKRPQ9H9S5 495 aa13.72□□□□□ -0.21
LDLR-202ENST00000455727 PRUNE2Q8WUY3 3088 aa13.71□□□□□ -0.21
LDLR-202ENST00000455727 UNC13CQ8NB66 2214 aa13.71□□□□□ -0.21
LDLR-202ENST00000455727 CENPXA8MT69 81 aa13.71□□□□□ -0.21
LDLR-202ENST00000455727 ZNF879B4DU55 563 aa13.71□□□□□ -0.21
LDLR-202ENST00000455727 ALG1L2C9J202 215 aa13.71□□□□□ -0.21
LDLR-202ENST00000455727 PAHP00439 452 aa13.71□□□□□ -0.21
LDLR-202ENST00000455727 IL12BP29460 328 aa13.71□□□□□ -0.21
LDLR-202ENST00000455727 EFNA3P52797 238 aa13.71□□□□□ -0.21
LDLR-202ENST00000455727 ZNF117Q03924 483 aa13.71□□□□□ -0.21
LDLR-202ENST00000455727 NSDHLQ15738 373 aa13.71□□□□□ -0.21
LDLR-202ENST00000455727 TATDN3Q17R31 274 aa13.71□□□□□ -0.21
LDLR-202ENST00000455727 HLA-DQA1Q5Y7H0 255 aa13.71□□□□□ -0.21
LDLR-202ENST00000455727 ZNF57Q68EA5 555 aaPredicted RBP13.71□□□□□ -0.21
LDLR-202ENST00000455727 GPR139Q6DWJ6 353 aa13.71□□□□□ -0.21
LDLR-202ENST00000455727 C9orf40Q8IXQ3 194 aa13.71□□□□□ -0.21
LDLR-202ENST00000455727 SLC35F3Q8IY50 421 aa13.71□□□□□ -0.21
LDLR-202ENST00000455727 LSM14AQ8ND56 463 aaKnown RBP13.71□□□□□ -0.21
LDLR-202ENST00000455727 KTI12Q96EK9 354 aaPredicted RBP13.71□□□□□ -0.21
LDLR-202ENST00000455727 GAL3ST4Q96RP7 486 aa13.71□□□□□ -0.21
LDLR-202ENST00000455727 HDHD2Q9H0R4 259 aa13.71□□□□□ -0.21
LDLR-202ENST00000455727 RPRD1BQ9NQG5 326 aaKnown RBP13.71□□□□□ -0.21
LDLR-202ENST00000455727 NLKQ9UBE8 527 aa13.71□□□□□ -0.21
LDLR-202ENST00000455727 WNT16Q9UBV4 365 aa13.71□□□□□ -0.21
LDLR-202ENST00000455727 TMEM265A0A087WTH1 108 aa13.7□□□□□ -0.22
LDLR-202ENST00000455727 A0A1B0GTQ1 180 aa13.7□□□□□ -0.22
LDLR-202ENST00000455727 OR6C76A6NM76 312 aa13.7□□□□□ -0.22
LDLR-202ENST00000455727 CPNE3O75131 537 aaKnown RBP13.7□□□□□ -0.22
LDLR-202ENST00000455727 TACSTD2P09758 323 aa13.7□□□□□ -0.22
LDLR-202ENST00000455727 FOLR1P15328 257 aa13.7□□□□□ -0.22
LDLR-202ENST00000455727 AFF3P51826 1226 aaKnown RBP13.7□□□□□ -0.22
LDLR-202ENST00000455727 IFITM2Q01629 132 aa13.7□□□□□ -0.22
LDLR-202ENST00000455727 RPL18Q07020 188 aaKnown RBP13.7□□□□□ -0.22
LDLR-202ENST00000455727 MRPL28Q13084 256 aaKnown RBP13.7□□□□□ -0.22
LDLR-202ENST00000455727 HSD17B12Q53GQ0 312 aa13.7□□□□□ -0.22
LDLR-202ENST00000455727 CCDC92Q53HC0 331 aaPredicted RBP13.7□□□□□ -0.22
LDLR-202ENST00000455727 WDR74Q6RFH5 385 aaPredicted RBP13.7□□□□□ -0.22
LDLR-202ENST00000455727 GHDCQ8N2G8 530 aa13.7□□□□□ -0.22
LDLR-202ENST00000455727 OR1N1Q8NGS0 311 aa13.7□□□□□ -0.22
LDLR-202ENST00000455727 TAAR8Q969N4 342 aa13.7□□□□□ -0.22
LDLR-202ENST00000455727 GRHPRQ9UBQ7 328 aa13.7□□□□□ -0.22
LDLR-202ENST00000455727 NUFIP1Q9UHK0 495 aaKnown RBP13.7□□□□□ -0.22
LDLR-202ENST00000455727 ZNF281Q9Y2X9 895 aa13.7□□□□□ -0.22
LDLR-202ENST00000455727 A0A1B0GX78 115 aa13.7□□□□□ -0.22
LDLR-202ENST00000455727 RGS13O14921 159 aa13.7□□□□□ -0.22
LDLR-202ENST00000455727 ORC5O43913 435 aa13.7□□□□□ -0.22
LDLR-202ENST00000455727 CDC40O60508 579 aaKnown RBP eCLIP13.7□□□□□ -0.22
LDLR-202ENST00000455727 HIST1H2ABP04908 130 aa13.7□□□□□ -0.22
LDLR-202ENST00000455727 ATF1P18846 271 aa13.7□□□□□ -0.22
LDLR-202ENST00000455727 AHCYP23526 432 aa13.7□□□□□ -0.22
LDLR-202ENST00000455727 SLC6A1P30531 599 aa13.7□□□□□ -0.22
LDLR-202ENST00000455727 PNLIPRP2P54317 469 aa13.7□□□□□ -0.22
LDLR-202ENST00000455727 ZP2Q05996 745 aa13.7□□□□□ -0.22
LDLR-202ENST00000455727 YIF1BQ5BJH7 314 aa13.7□□□□□ -0.22
LDLR-202ENST00000455727 VWA2Q5GFL6 755 aa13.7□□□□□ -0.22
LDLR-202ENST00000455727 SNAP47Q5SQN1 464 aa13.7□□□□□ -0.22
LDLR-202ENST00000455727 HIST3H2AQ7L7L0 130 aa13.7□□□□□ -0.22
LDLR-202ENST00000455727 NANOGNBQ7Z5D8 188 aa13.7□□□□□ -0.22
LDLR-202ENST00000455727 PRR22Q8IZ63 422 aa13.7□□□□□ -0.22
LDLR-202ENST00000455727 SLC25A45Q8N413 288 aa13.7□□□□□ -0.22
LDLR-202ENST00000455727 HIST1H2ACQ93077 130 aa13.7□□□□□ -0.22
LDLR-202ENST00000455727 CREB3L1Q96BA8 519 aa13.7□□□□□ -0.22
LDLR-202ENST00000455727 OR14A2Q96R54 314 aa13.7□□□□□ -0.22
LDLR-202ENST00000455727 ABHD1Q96SE0 405 aa13.7□□□□□ -0.22
LDLR-202ENST00000455727 MNTQ99583 582 aa13.7□□□□□ -0.22
LDLR-202ENST00000455727 PDCD1LG2Q9BQ51 273 aa13.7□□□□□ -0.22
LDLR-202ENST00000455727 RTN4RQ9BZR6 473 aa13.7□□□□□ -0.22
LDLR-202ENST00000455727 WWTR1Q9GZV5 400 aa13.7□□□□□ -0.22
LDLR-202ENST00000455727 CCDC86Q9H6F5 360 aaKnown RBP13.7□□□□□ -0.22
LDLR-202ENST00000455727 DDX28Q9NUL7 540 aaKnown RBP13.7□□□□□ -0.22
LDLR-202ENST00000455727 COPS7AQ9UBW8 275 aa13.7□□□□□ -0.22
LDLR-202ENST00000455727 SPATA2Q9UM82 520 aa13.7□□□□□ -0.22
LDLR-202ENST00000455727 RBMX2Q9Y388 322 aaKnown RBP13.7□□□□□ -0.22
LDLR-202ENST00000455727 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa13.69□□□□□ -0.22
LDLR-202ENST00000455727 BCAT2O15382 392 aaPredicted RBP13.69□□□□□ -0.22
LDLR-202ENST00000455727 HCRTR2O43614 444 aa13.69□□□□□ -0.22
LDLR-202ENST00000455727 NDUFB5O43674 189 aa13.69□□□□□ -0.22
LDLR-202ENST00000455727 UBL3O95164 117 aa13.69□□□□□ -0.22
LDLR-202ENST00000455727 TFPIP10646 304 aa13.69□□□□□ -0.22
LDLR-202ENST00000455727 SRMP19623 302 aa13.69□□□□□ -0.22
LDLR-202ENST00000455727 CSF2RBP32927 897 aa13.69□□□□□ -0.22
LDLR-202ENST00000455727 NR0B1P51843 470 aaKnown RBP13.69□□□□□ -0.22
LDLR-202ENST00000455727 PITPNAQ00169 270 aa13.69□□□□□ -0.22
LDLR-202ENST00000455727 PRAMEF17Q5VTA0 474 aa13.69□□□□□ -0.22
LDLR-202ENST00000455727 BAIAP2L2Q6UXY1 529 aa13.69□□□□□ -0.22
LDLR-202ENST00000455727 SLC29A4Q7RTT9 530 aa13.69□□□□□ -0.22
LDLR-202ENST00000455727 TIGD4Q8IY51 512 aa13.69□□□□□ -0.22
LDLR-202ENST00000455727 ZNF441Q8N8Z8 693 aa13.69□□□□□ -0.22
LDLR-202ENST00000455727 PLPP5Q8NEB5 264 aa13.69□□□□□ -0.22
LDLR-202ENST00000455727 OR2T4Q8NH00 348 aa13.69□□□□□ -0.22
LDLR-202ENST00000455727 UBASH3BQ8TF42 649 aa13.69□□□□□ -0.22
LDLR-202ENST00000455727 RNF166Q96A37 237 aaPredicted RBP13.69□□□□□ -0.22
LDLR-202ENST00000455727 UPRTQ96BW1 309 aa13.69□□□□□ -0.22
LDLR-202ENST00000455727 TP63Q9H3D4 680 aaPredicted RBP13.69□□□□□ -0.22
LDLR-202ENST00000455727 RABL2AQ9UBK7 228 aaPredicted RBP13.69□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 22.1 ms