RNA–Protein interactions for RNA: ENST00000450966.5

USP40-208, Transcript of ubiquitin specific peptidase 40, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene USP40, Length 5,616 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-208ENST00000450966 OR5K3A6NET4 321 aa12.38□□□□□ -0.43
USP40-208ENST00000450966 SNRPBP14678 240 aaKnown RBP12.38□□□□□ -0.43
USP40-208ENST00000450966 CDKN1CP49918 316 aaPredicted RBP12.38□□□□□ -0.43
USP40-208ENST00000450966 SPCS3P61009 180 aa12.38□□□□□ -0.43
USP40-208ENST00000450966 SIM1P81133 766 aaPredicted RBP12.38□□□□□ -0.43
USP40-208ENST00000450966 PJVKQ0ZLH3 352 aa12.38□□□□□ -0.43
USP40-208ENST00000450966 PMPCAQ10713 525 aa12.38□□□□□ -0.43
USP40-208ENST00000450966 SCAPQ12770 1279 aa12.38□□□□□ -0.43
USP40-208ENST00000450966 TMPRSS7Q7RTY8 843 aa12.38□□□□□ -0.43
USP40-208ENST00000450966 MFSD9Q8NBP5 474 aa12.38□□□□□ -0.43
USP40-208ENST00000450966 RTP3Q9BQQ7 232 aa12.38□□□□□ -0.43
USP40-208ENST00000450966 GPR62Q9BZJ7 368 aa12.38□□□□□ -0.43
USP40-208ENST00000450966 FZD3Q9NPG1 666 aa12.38□□□□□ -0.43
USP40-208ENST00000450966 CFAP20Q9Y6A4 193 aaKnown RBP12.38□□□□□ -0.43
USP40-208ENST00000450966 MTX2O75431 263 aa12.38□□□□□ -0.43
USP40-208ENST00000450966 AK1P00568 194 aa12.38□□□□□ -0.43
USP40-208ENST00000450966 HOXB5P09067 269 aa12.38□□□□□ -0.43
USP40-208ENST00000450966 ZNF16P17020 682 aaPredicted RBP12.38□□□□□ -0.43
USP40-208ENST00000450966 USF1P22415 310 aaPredicted RBP12.38□□□□□ -0.43
USP40-208ENST00000450966 CXCL12P48061 93 aa12.38□□□□□ -0.43
USP40-208ENST00000450966 SELENOVP59797 346 aa12.38□□□□□ -0.43
USP40-208ENST00000450966 MRPS34P82930 218 aaKnown RBP12.38□□□□□ -0.43
USP40-208ENST00000450966 MFGE8Q08431 387 aaPredicted RBP12.38□□□□□ -0.43
USP40-208ENST00000450966 ACSM1Q08AH1 577 aa12.38□□□□□ -0.43
USP40-208ENST00000450966 TEX30Q5JUR7 227 aa12.38□□□□□ -0.43
USP40-208ENST00000450966 CPOQ8IVL8 374 aa12.38□□□□□ -0.43
USP40-208ENST00000450966 SULF2Q8IWU5 870 aa12.38□□□□□ -0.43
USP40-208ENST00000450966 ZNF286AQ9HBT8 521 aa12.38□□□□□ -0.43
USP40-208ENST00000450966 A6NIZ1 184 aa12.37□□□□□ -0.43
USP40-208ENST00000450966 CLDN7O95471 211 aa12.37□□□□□ -0.43
USP40-208ENST00000450966 FOLR1P15328 257 aa12.37□□□□□ -0.43
USP40-208ENST00000450966 EVX1P49640 407 aa12.37□□□□□ -0.43
USP40-208ENST00000450966 RAG2P55895 527 aa12.37□□□□□ -0.43
USP40-208ENST00000450966 RAP1BP61224 184 aa12.37□□□□□ -0.43
USP40-208ENST00000450966 RGNQ15493 299 aa12.37□□□□□ -0.43
USP40-208ENST00000450966 MDGA2Q7Z553 956 aa12.37□□□□□ -0.43
USP40-208ENST00000450966 PLXDC1Q8IUK5 500 aa12.37□□□□□ -0.43
USP40-208ENST00000450966 INTS12Q96CB8 462 aaKnown RBP12.37□□□□□ -0.43
USP40-208ENST00000450966 TIMM29Q9BSF4 260 aa12.37□□□□□ -0.43
USP40-208ENST00000450966 C20orf27Q9GZN8 174 aa12.37□□□□□ -0.43
USP40-208ENST00000450966 RFPL4AA6NLU0 287 aa12.37□□□□□ -0.43
USP40-208ENST00000450966 FAM166BA8MTA8 275 aa12.37□□□□□ -0.43
USP40-208ENST00000450966 RFPL4AL1F8VTS6 287 aa12.37□□□□□ -0.43
USP40-208ENST00000450966 SIAH2O43255 324 aa12.37□□□□□ -0.43
USP40-208ENST00000450966 ACVRL1P37023 503 aa12.37□□□□□ -0.43
USP40-208ENST00000450966 TNFRSF4P43489 277 aa12.37□□□□□ -0.43
USP40-208ENST00000450966 STEAP1BQ6NZ63 245 aa12.37□□□□□ -0.43
USP40-208ENST00000450966 REC114Q7Z4M0 266 aa12.37□□□□□ -0.43
USP40-208ENST00000450966 SLC35F2Q8IXU6 374 aa12.37□□□□□ -0.43
USP40-208ENST00000450966 GPR78Q96P69 363 aa12.37□□□□□ -0.43
USP40-208ENST00000450966 SLC2A13Q96QE2 648 aa12.37□□□□□ -0.43
USP40-208ENST00000450966 SEC61A2Q9H9S3 476 aa12.37□□□□□ -0.43
USP40-208ENST00000450966 PCDHGA9Q9Y5G4 932 aaKnown RBP12.37□□□□□ -0.43
USP40-208ENST00000450966 MSTNO14793 375 aa12.37□□□□□ -0.43
USP40-208ENST00000450966 SURF4O15260 269 aa12.37□□□□□ -0.43
USP40-208ENST00000450966 BDKRB1P46663 353 aa12.37□□□□□ -0.43
USP40-208ENST00000450966 SRP9P49458 86 aaKnown RBP12.37□□□□□ -0.43
USP40-208ENST00000450966 RIDAP52758 137 aaKnown RBP12.37□□□□□ -0.43
USP40-208ENST00000450966 HLXQ14774 488 aaPredicted RBP12.37□□□□□ -0.43
USP40-208ENST00000450966 NCMAPQ5T1S8 102 aa12.37□□□□□ -0.43
USP40-208ENST00000450966 KDM4DQ6B0I6 523 aa12.37□□□□□ -0.43
USP40-208ENST00000450966 RTL6Q6ICC9 239 aa12.37□□□□□ -0.43
USP40-208ENST00000450966 OR2A2Q6IF42 318 aa12.37□□□□□ -0.43
USP40-208ENST00000450966 PKD1L3Q7Z443 1732 aa12.37□□□□□ -0.43
USP40-208ENST00000450966 OR4K1Q8NGD4 311 aa12.37□□□□□ -0.43
USP40-208ENST00000450966 OR5L2Q8NGL0 311 aa12.37□□□□□ -0.43
USP40-208ENST00000450966 OR6N1Q8NGY5 312 aa12.37□□□□□ -0.43
USP40-208ENST00000450966 PHYHIPQ92561 330 aa12.37□□□□□ -0.43
USP40-208ENST00000450966 RAB8BQ92930 207 aa12.37□□□□□ -0.43
USP40-208ENST00000450966 ARHGDIGQ99819 225 aa12.37□□□□□ -0.43
USP40-208ENST00000450966 CDCA4Q9BXL8 241 aa12.37□□□□□ -0.43
USP40-208ENST00000450966 B4GALT7Q9UBV7 327 aa12.37□□□□□ -0.43
USP40-208ENST00000450966 LOC102724200A0A096LPH7 203 aaPredicted RBP12.37□□□□□ -0.43
USP40-208ENST00000450966 CCSO14618 274 aa12.37□□□□□ -0.43
USP40-208ENST00000450966 TP53I11O14683 189 aa12.37□□□□□ -0.43
USP40-208ENST00000450966 ACAA1P09110 424 aaPredicted RBP12.37□□□□□ -0.43
USP40-208ENST00000450966 CD37P11049 281 aa12.37□□□□□ -0.43
USP40-208ENST00000450966 DDTP30046 118 aa12.37□□□□□ -0.43
USP40-208ENST00000450966 RPS15P62841 145 aaKnown RBP12.37□□□□□ -0.43
USP40-208ENST00000450966 MRPS21P82921 87 aaKnown RBP12.37□□□□□ -0.43
USP40-208ENST00000450966 DOC2AQ14183 400 aa12.37□□□□□ -0.43
USP40-208ENST00000450966 CTU2Q2VPK5 515 aaKnown RBP12.37□□□□□ -0.43
USP40-208ENST00000450966 FAM74A1Q5RGS3 127 aa12.37□□□□□ -0.43
USP40-208ENST00000450966 OR2G6Q5TZ20 316 aa12.37□□□□□ -0.43
USP40-208ENST00000450966 MCATQ8IVS2 390 aaKnown RBP12.37□□□□□ -0.43
USP40-208ENST00000450966 VN1R2Q8NFZ6 395 aa12.37□□□□□ -0.43
USP40-208ENST00000450966 LGALS14Q8TCE9 139 aa12.37□□□□□ -0.43
USP40-208ENST00000450966 PACRGQ96M98 296 aaPredicted RBP12.37□□□□□ -0.43
USP40-208ENST00000450966 DUSP23Q9BVJ7 150 aa12.37□□□□□ -0.43
USP40-208ENST00000450966 KCNK6Q9Y257 313 aa12.37□□□□□ -0.43
USP40-208ENST00000450966 CCDC163A0A0D9SF12 145 aa12.36□□□□□ -0.43
USP40-208ENST00000450966 MEIS3P1A6NDR6 274 aa12.36□□□□□ -0.43
USP40-208ENST00000450966 B4GALT2O60909 372 aa12.36□□□□□ -0.43
USP40-208ENST00000450966 KCNJ3P48549 501 aa12.36□□□□□ -0.43
USP40-208ENST00000450966 SLC14A1Q13336 389 aa12.36□□□□□ -0.43
USP40-208ENST00000450966 ETFDHQ16134 617 aa12.36□□□□□ -0.43
USP40-208ENST00000450966 LEXMQ3ZCV2 418 aa12.36□□□□□ -0.43
USP40-208ENST00000450966 FAM182AQ5T1J6 154 aa12.36□□□□□ -0.43
USP40-208ENST00000450966 LEMD1Q68G75 181 aa12.36□□□□□ -0.43
USP40-208ENST00000450966 TMIGD1Q6UXZ0 262 aa12.36□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 44.2 ms