RNA–Protein interactions for RNA: ENST00000443046.5

HMGN1-208, Transcript of high mobility group nucleosome binding domain 1, humanhuman

TSL 3

Gene HMGN1, Length 823 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN1-208ENST00000443046 FRS3O43559 492 aa12.36□□□□□ -0.43
HMGN1-208ENST00000443046 RP2O75695 350 aa12.36□□□□□ -0.43
HMGN1-208ENST00000443046 C1QCP02747 245 aa12.36□□□□□ -0.43
HMGN1-208ENST00000443046 GSNP06396 782 aa12.36□□□□□ -0.43
HMGN1-208ENST00000443046 FAM153BP0C7A2 387 aa12.36□□□□□ -0.43
HMGN1-208ENST00000443046 ZNF35P13682 527 aa12.36□□□□□ -0.43
HMGN1-208ENST00000443046 KRT4P19013 534 aa12.36□□□□□ -0.43
HMGN1-208ENST00000443046 CXCR1P25024 350 aa12.36□□□□□ -0.43
HMGN1-208ENST00000443046 ALDH3A1P30838 453 aa12.36□□□□□ -0.43
HMGN1-208ENST00000443046 ACAA2P42765 397 aaKnown RBP12.36□□□□□ -0.43
HMGN1-208ENST00000443046 EMX2Q04743 252 aa12.36□□□□□ -0.43
HMGN1-208ENST00000443046 TUSC1Q2TAM9 212 aa12.36□□□□□ -0.43
HMGN1-208ENST00000443046 KRT80Q6KB66 452 aa12.36□□□□□ -0.43
HMGN1-208ENST00000443046 SHISA2Q6UWI4 295 aa12.36□□□□□ -0.43
HMGN1-208ENST00000443046 ZCCHC23Q6ZST2 131 aa12.36□□□□□ -0.43
HMGN1-208ENST00000443046 C1QL2Q7Z5L3 287 aa12.36□□□□□ -0.43
HMGN1-208ENST00000443046 MDP1Q86V88 176 aa12.36□□□□□ -0.43
HMGN1-208ENST00000443046 OR4A15Q8NGL6 344 aa12.36□□□□□ -0.43
HMGN1-208ENST00000443046 ZNF837Q96EG3 531 aaPredicted RBP12.36□□□□□ -0.43
HMGN1-208ENST00000443046 ZNF75AQ96N20 296 aa12.36□□□□□ -0.43
HMGN1-208ENST00000443046 SUCNR1Q9BXA5 334 aa12.36□□□□□ -0.43
HMGN1-208ENST00000443046 TMPRSS13Q9BYE2 586 aa12.36□□□□□ -0.43
HMGN1-208ENST00000443046 NARFLQ9H6Q4 476 aa12.36□□□□□ -0.43
HMGN1-208ENST00000443046 GPR35Q9HC97 309 aa12.36□□□□□ -0.43
HMGN1-208ENST00000443046 ZNF275Q9NSD4 429 aaPredicted RBP12.36□□□□□ -0.43
HMGN1-208ENST00000443046 ADPRHL2Q9NX46 363 aa12.36□□□□□ -0.43
HMGN1-208ENST00000443046 RCE1Q9Y256 329 aa12.36□□□□□ -0.43
HMGN1-208ENST00000443046 PRSS51A0A1B0GVH4 220 aa12.35□□□□□ -0.43
HMGN1-208ENST00000443046 FTCDNL1E5RQL4 147 aa12.35□□□□□ -0.43
HMGN1-208ENST00000443046 M0R233 179 aa12.35□□□□□ -0.43
HMGN1-208ENST00000443046 FZD7O75084 574 aa12.35□□□□□ -0.43
HMGN1-208ENST00000443046 CHRM4P08173 479 aa12.35□□□□□ -0.43
HMGN1-208ENST00000443046 TFPTP0C1Z6 253 aa12.35□□□□□ -0.43
HMGN1-208ENST00000443046 UQCRBP14927 111 aa12.35□□□□□ -0.43
HMGN1-208ENST00000443046 CREB1P16220 341 aa12.35□□□□□ -0.43
HMGN1-208ENST00000443046 GLRXP35754 106 aa12.35□□□□□ -0.43
HMGN1-208ENST00000443046 MYBPC1Q00872 1141 aa12.35□□□□□ -0.43
HMGN1-208ENST00000443046 DEFA6Q01524 100 aa12.35□□□□□ -0.43
HMGN1-208ENST00000443046 BNIP2Q12982 314 aa12.35□□□□□ -0.43
HMGN1-208ENST00000443046 SYPL1Q16563 259 aa12.35□□□□□ -0.43
HMGN1-208ENST00000443046 SMU1Q2TAY7 513 aa12.35□□□□□ -0.43
HMGN1-208ENST00000443046 GPAT3Q53EU6 434 aa12.35□□□□□ -0.43
HMGN1-208ENST00000443046 MRPL2Q5T653 305 aaKnown RBP12.35□□□□□ -0.43
HMGN1-208ENST00000443046 CCDC36Q8IYA8 594 aa12.35□□□□□ -0.43
HMGN1-208ENST00000443046 RIBC1Q8N443 379 aaPredicted RBP12.35□□□□□ -0.43
HMGN1-208ENST00000443046 ANKFN1Q8N957 763 aa12.35□□□□□ -0.43
HMGN1-208ENST00000443046 TAPBPLQ9BX59 468 aa12.35□□□□□ -0.43
HMGN1-208ENST00000443046 MTHFD2LQ9H903 347 aaPredicted RBP12.35□□□□□ -0.43
HMGN1-208ENST00000443046 CRLF2Q9HC73 371 aa12.35□□□□□ -0.43
HMGN1-208ENST00000443046 ZDHHC2Q9UIJ5 367 aa12.35□□□□□ -0.43
HMGN1-208ENST00000443046 CDHR4A6H8M9 788 aa12.34□□□□□ -0.43
HMGN1-208ENST00000443046 NCR1O76036 304 aa12.34□□□□□ -0.43
HMGN1-208ENST00000443046 SHBGP04278 402 aa12.34□□□□□ -0.43
HMGN1-208ENST00000443046 HKR1P10072 659 aa12.34□□□□□ -0.43
HMGN1-208ENST00000443046 TCN1P20061 433 aaPredicted RBP12.34□□□□□ -0.43
HMGN1-208ENST00000443046 SEC24CP53992 1094 aa12.34□□□□□ -0.43
HMGN1-208ENST00000443046 HPCAP84074 193 aa12.34□□□□□ -0.43
HMGN1-208ENST00000443046 NPRL3Q12980 569 aa12.34□□□□□ -0.43
HMGN1-208ENST00000443046 MAD2L1Q13257 205 aaPredicted RBP12.34□□□□□ -0.43
HMGN1-208ENST00000443046 CASP8Q14790 479 aa12.34□□□□□ -0.43
HMGN1-208ENST00000443046 FXNQ16595 210 aa12.34□□□□□ -0.43
HMGN1-208ENST00000443046 C1orf140Q5VVS0 124 aa12.34□□□□□ -0.43
HMGN1-208ENST00000443046 PRAMEF8Q5VWM4 474 aa12.34□□□□□ -0.43
HMGN1-208ENST00000443046 PRAMEF7Q5VXH5 474 aa12.34□□□□□ -0.43
HMGN1-208ENST00000443046 REP15Q6BDI9 236 aa12.34□□□□□ -0.43
HMGN1-208ENST00000443046 LRRC74BQ6ZQY2 392 aa12.34□□□□□ -0.43
HMGN1-208ENST00000443046 ANKRD46Q86W74 232 aa12.34□□□□□ -0.43
HMGN1-208ENST00000443046 ZNF440Q8IYI8 595 aa12.34□□□□□ -0.43
HMGN1-208ENST00000443046 C4orf33Q8N1A6 199 aa12.34□□□□□ -0.43
HMGN1-208ENST00000443046 AGR3Q8TD06 166 aa12.34□□□□□ -0.43
HMGN1-208ENST00000443046 TUBGCP3Q96CW5 907 aa12.34□□□□□ -0.43
HMGN1-208ENST00000443046 SLC6A7Q99884 636 aa12.34□□□□□ -0.43
HMGN1-208ENST00000443046 RLIMQ9NVW2 624 aa12.34□□□□□ -0.43
HMGN1-208ENST00000443046 MKS1Q9NXB0 559 aa12.34□□□□□ -0.43
HMGN1-208ENST00000443046 NOP53Q9NZM5 478 aaKnown RBP12.34□□□□□ -0.43
HMGN1-208ENST00000443046 B3GAT1Q9P2W7 334 aa12.34□□□□□ -0.43
HMGN1-208ENST00000443046 MARCOQ9UEW3 520 aaPredicted RBP12.34□□□□□ -0.43
HMGN1-208ENST00000443046 A0A0G2JK05 382 aa12.33□□□□□ -0.44
HMGN1-208ENST00000443046 DEAF1O75398 565 aaPredicted RBP12.33□□□□□ -0.44
HMGN1-208ENST00000443046 CPSF4O95639 269 aaKnown RBP12.33□□□□□ -0.44
HMGN1-208ENST00000443046 FSHBP01225 129 aa12.33□□□□□ -0.44
HMGN1-208ENST00000443046 DBIP07108 87 aaKnown RBP12.33□□□□□ -0.44
HMGN1-208ENST00000443046 ANPEPP15144 967 aa12.33□□□□□ -0.44
HMGN1-208ENST00000443046 IL7RP16871 459 aa12.33□□□□□ -0.44
HMGN1-208ENST00000443046 ZNF14P17017 642 aaPredicted RBP12.33□□□□□ -0.44
HMGN1-208ENST00000443046 SERPINB5P36952 375 aa12.33□□□□□ -0.44
HMGN1-208ENST00000443046 ALDH3B1P43353 468 aa12.33□□□□□ -0.44
HMGN1-208ENST00000443046 CLDN17P56750 224 aa12.33□□□□□ -0.44
HMGN1-208ENST00000443046 UBA52P62987 128 aaKnown RBP12.33□□□□□ -0.44
HMGN1-208ENST00000443046 FOXL1Q12952 345 aa12.33□□□□□ -0.44
HMGN1-208ENST00000443046 MAPK11Q15759 364 aa12.33□□□□□ -0.44
HMGN1-208ENST00000443046 PDCD2Q16342 344 aaPredicted RBP12.33□□□□□ -0.44
HMGN1-208ENST00000443046 CEACAM16Q2WEN9 425 aa12.33□□□□□ -0.44
HMGN1-208ENST00000443046 WBP2NLQ6ICG8 309 aa12.33□□□□□ -0.44
HMGN1-208ENST00000443046 ACSM5Q6NUN0 579 aa12.33□□□□□ -0.44
HMGN1-208ENST00000443046 LRP11Q86VZ4 500 aa12.33□□□□□ -0.44
HMGN1-208ENST00000443046 KDM8Q8N371 416 aa12.33□□□□□ -0.44
HMGN1-208ENST00000443046 MFSD8Q8NHS3 518 aa12.33□□□□□ -0.44
HMGN1-208ENST00000443046 TESCQ96BS2 214 aa12.33□□□□□ -0.44
HMGN1-208ENST00000443046 SLC35A5Q9BS91 424 aa12.33□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms