RNA–Protein interactions for RNA: ENST00000429035.1

SDC1-204, Transcript of syndecan 1, humanhuman

TSL 3

Gene SDC1, Length 646 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-204ENST00000429035 MAL2Q969L2 176 aa12.63□□□□□ -0.39
SDC1-204ENST00000429035 VPS33AQ96AX1 596 aa12.63□□□□□ -0.39
SDC1-204ENST00000429035 PIF1Q9H611 641 aa12.63□□□□□ -0.39
SDC1-204ENST00000429035 ZIM2Q9NZV7 527 aa12.63□□□□□ -0.39
SDC1-204ENST00000429035 SEC14L4Q9UDX3 406 aa12.63□□□□□ -0.39
SDC1-204ENST00000429035 MXRA5Q9NR99 2828 aa12.62□□□□□ -0.39
SDC1-204ENST00000429035 IGHV4-61A0A0C4DH41 118 aa12.62□□□□□ -0.39
SDC1-204ENST00000429035 A0A0G2JPF8 293 aa12.62□□□□□ -0.39
SDC1-204ENST00000429035 OR6C65A6NJZ3 312 aa12.62□□□□□ -0.39
SDC1-204ENST00000429035 HNRNPCL2B2RXH8 293 aa12.62□□□□□ -0.39
SDC1-204ENST00000429035 HNRNPCL3B7ZW38 293 aa12.62□□□□□ -0.39
SDC1-204ENST00000429035 SLCO1B7G3V0H7 640 aa12.62□□□□□ -0.39
SDC1-204ENST00000429035 HNRNPCL1O60812 293 aaKnown RBP12.62□□□□□ -0.39
SDC1-204ENST00000429035 SLC43A1O75387 559 aa12.62□□□□□ -0.39
SDC1-204ENST00000429035 CELA3BP08861 270 aa12.62□□□□□ -0.39
SDC1-204ENST00000429035 NUDT7P0C024 238 aa12.62□□□□□ -0.39
SDC1-204ENST00000429035 HNRNPCL4P0DMR1 293 aa12.62□□□□□ -0.39
SDC1-204ENST00000429035 HNF1AP20823 631 aa12.62□□□□□ -0.39
SDC1-204ENST00000429035 CALCRP30988 508 aa12.62□□□□□ -0.39
SDC1-204ENST00000429035 POLR2JP52435 117 aaKnown RBP12.62□□□□□ -0.39
SDC1-204ENST00000429035 NCALDP61601 193 aa12.62□□□□□ -0.39
SDC1-204ENST00000429035 ZSWIM7Q19AV6 140 aa12.62□□□□□ -0.39
SDC1-204ENST00000429035 ANKRD16Q6P6B7 361 aa12.62□□□□□ -0.39
SDC1-204ENST00000429035 EPHX4Q8IUS5 362 aa12.62□□□□□ -0.39
SDC1-204ENST00000429035 BCL2L2Q92843 193 aaPredicted RBP12.62□□□□□ -0.39
SDC1-204ENST00000429035 KTI12Q96EK9 354 aaPredicted RBP12.62□□□□□ -0.39
SDC1-204ENST00000429035 BPESC1Q9GZL8 116 aa12.62□□□□□ -0.39
SDC1-204ENST00000429035 DYNLRB1Q9NP97 96 aa12.62□□□□□ -0.39
SDC1-204ENST00000429035 TMEM160Q9NX00 188 aa12.62□□□□□ -0.39
SDC1-204ENST00000429035 NKIRAS1Q9NYS0 192 aa12.62□□□□□ -0.39
SDC1-204ENST00000429035 IFT52Q9Y366 437 aa12.62□□□□□ -0.39
SDC1-204ENST00000429035 ARPC4-TTLL3A0A0A6YYG9 625 aa12.61□□□□□ -0.39
SDC1-204ENST00000429035 SLC35F4A4IF30 521 aa12.61□□□□□ -0.39
SDC1-204ENST00000429035 B9A039 149 aa12.61□□□□□ -0.39
SDC1-204ENST00000429035 hCG_2039718K7EN88 272 aa12.61□□□□□ -0.39
SDC1-204ENST00000429035 M0R082 166 aa12.61□□□□□ -0.39
SDC1-204ENST00000429035 NDUFS8O00217 210 aa12.61□□□□□ -0.39
SDC1-204ENST00000429035 UBDO15205 165 aa12.61□□□□□ -0.39
SDC1-204ENST00000429035 AKAP8O43823 692 aaKnown RBP12.61□□□□□ -0.39
SDC1-204ENST00000429035 SNNO75324 88 aaPredicted RBP12.61□□□□□ -0.39
SDC1-204ENST00000429035 ZCCHC18P0CG32 403 aa12.61□□□□□ -0.39
SDC1-204ENST00000429035 SH3BGRP55822 239 aaPredicted RBP12.61□□□□□ -0.39
SDC1-204ENST00000429035 STX1BP61266 288 aa12.61□□□□□ -0.39
SDC1-204ENST00000429035 ARF1P84077 181 aaKnown RBP12.61□□□□□ -0.39
SDC1-204ENST00000429035 ADIPOQQ15848 244 aa12.61□□□□□ -0.39
SDC1-204ENST00000429035 CEACAM16Q2WEN9 425 aa12.61□□□□□ -0.39
SDC1-204ENST00000429035 KRTAP24-1Q3LI83 254 aa12.61□□□□□ -0.39
SDC1-204ENST00000429035 TNFAIP8L3Q5GJ75 292 aa12.61□□□□□ -0.39
SDC1-204ENST00000429035 C1QTNF12Q5T7M4 302 aa12.61□□□□□ -0.39
SDC1-204ENST00000429035 CARD17Q5XLA6 110 aa12.61□□□□□ -0.39
SDC1-204ENST00000429035 SLC2A7Q6PXP3 512 aa12.61□□□□□ -0.39
SDC1-204ENST00000429035 MSANTD1Q6ZTZ1 278 aa12.61□□□□□ -0.39
SDC1-204ENST00000429035 MAVSQ7Z434 540 aa12.61□□□□□ -0.39
SDC1-204ENST00000429035 SPATA21Q7Z572 469 aa12.61□□□□□ -0.39
SDC1-204ENST00000429035 CROCCP2Q86T23 111 aa12.61□□□□□ -0.39
SDC1-204ENST00000429035 MYPOPQ86VE0 399 aaPredicted RBP12.61□□□□□ -0.39
SDC1-204ENST00000429035 MIER2Q8N344 545 aa12.61□□□□□ -0.39
SDC1-204ENST00000429035 SVOPLQ8N434 492 aa12.61□□□□□ -0.39
SDC1-204ENST00000429035 MFSD8Q8NHS3 518 aa12.61□□□□□ -0.39
SDC1-204ENST00000429035 BBS10Q8TAM1 723 aa12.61□□□□□ -0.39
SDC1-204ENST00000429035 ZNF417Q8TAU3 575 aa12.61□□□□□ -0.39
SDC1-204ENST00000429035 MSI2Q96DH6 328 aaKnown RBP12.61□□□□□ -0.39
SDC1-204ENST00000429035 FOXN4Q96NZ1 517 aa12.61□□□□□ -0.39
SDC1-204ENST00000429035 OR52B2Q96RD2 323 aa12.61□□□□□ -0.39
SDC1-204ENST00000429035 ZNF587Q96SQ5 575 aaPredicted RBP12.61□□□□□ -0.39
SDC1-204ENST00000429035 PTDSS2Q9BVG9 487 aa12.61□□□□□ -0.39
SDC1-204ENST00000429035 PRR14Q9BWN1 585 aa12.61□□□□□ -0.39
SDC1-204ENST00000429035 LINC00470Q9BZP3 86 aa12.61□□□□□ -0.39
SDC1-204ENST00000429035 RAB1BQ9H0U4 201 aa12.61□□□□□ -0.39
SDC1-204ENST00000429035 NELFAQ9H3P2 528 aa12.61□□□□□ -0.39
SDC1-204ENST00000429035 RAD21L1Q9H4I0 556 aa12.61□□□□□ -0.39
SDC1-204ENST00000429035 MYOZ1Q9NP98 299 aaPredicted RBP12.61□□□□□ -0.39
SDC1-204ENST00000429035 THUMPD1Q9NXG2 353 aaKnown RBP12.61□□□□□ -0.39
SDC1-204ENST00000429035 CHST2Q9Y4C5 530 aa12.61□□□□□ -0.39
SDC1-204ENST00000429035 LOC390937A0A1W2PQ73 354 aa12.6□□□□□ -0.39
SDC1-204ENST00000429035 SH3PXD2BA1X283 911 aa12.6□□□□□ -0.39
SDC1-204ENST00000429035 VWC2LB2RUY7 222 aa12.6□□□□□ -0.39
SDC1-204ENST00000429035 CLIC1O00299 241 aa12.6□□□□□ -0.39
SDC1-204ENST00000429035 AIM2O14862 343 aa12.6□□□□□ -0.39
SDC1-204ENST00000429035 NPIPB7O75200 414 aa12.6□□□□□ -0.39
SDC1-204ENST00000429035 PDE5AO76074 875 aa12.6□□□□□ -0.39
SDC1-204ENST00000429035 ERCC1P07992 297 aaPredicted RBP12.6□□□□□ -0.39
SDC1-204ENST00000429035 NQO1P15559 274 aaKnown RBP12.6□□□□□ -0.39
SDC1-204ENST00000429035 RGNQ15493 299 aa12.6□□□□□ -0.39
SDC1-204ENST00000429035 FAM120AOSQ5T036 256 aa12.6□□□□□ -0.39
SDC1-204ENST00000429035 OR4F15Q8NGB8 312 aa12.6□□□□□ -0.39
SDC1-204ENST00000429035 NFKBIDQ8NI38 313 aa12.6□□□□□ -0.39
SDC1-204ENST00000429035 SLC38A4Q969I6 547 aa12.6□□□□□ -0.39
SDC1-204ENST00000429035 MAELQ96JY0 434 aaKnown RBP12.6□□□□□ -0.39
SDC1-204ENST00000429035 A4GALTQ9NPC4 353 aa12.6□□□□□ -0.39
SDC1-204ENST00000429035 RCE1Q9Y256 329 aa12.6□□□□□ -0.39
SDC1-204ENST00000429035 PCDHB14Q9Y5E9 798 aa12.6□□□□□ -0.39
SDC1-204ENST00000429035 LRP5LA4QPB2 252 aa12.59□□□□□ -0.39
SDC1-204ENST00000429035 FTCDNL1E5RQL4 147 aa12.59□□□□□ -0.39
SDC1-204ENST00000429035 M0R3G1 203 aa12.59□□□□□ -0.39
SDC1-204ENST00000429035 HAX1O00165 279 aa12.59□□□□□ -0.39
SDC1-204ENST00000429035 SERPINI2O75830 405 aa12.59□□□□□ -0.39
SDC1-204ENST00000429035 TGFAP01135 160 aa12.59□□□□□ -0.39
SDC1-204ENST00000429035 GRPRP30550 384 aa12.59□□□□□ -0.39
SDC1-204ENST00000429035 THBS4P35443 961 aa12.59□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 58.9 ms