RNA–Protein interactions for RNA: ENST00000401394.5

CTCF-202, Transcript of CCCTC-binding factor, humanhuman

TSL 1 (best) BASIC

Gene CTCF, Length 2,978 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTCF-202ENST00000401394 TMEM27Q9HBJ8 222 aa19.2■□□□□ 0.66
CTCF-202ENST00000401394 PRDM9Q9NQV7 894 aa19.2■□□□□ 0.66
CTCF-202ENST00000401394 A0A1W2PQU0 124 aa19.2■□□□□ 0.66
CTCF-202ENST00000401394 BLOC1S5-TXNDC5H3BN57 136 aa19.2■□□□□ 0.66
CTCF-202ENST00000401394 LIPCP11150 499 aa19.2■□□□□ 0.66
CTCF-202ENST00000401394 MYOGP15173 224 aa19.2■□□□□ 0.66
CTCF-202ENST00000401394 MAZP56270 477 aaKnown RBP19.2■□□□□ 0.66
CTCF-202ENST00000401394 TMPRSS12Q86WS5 348 aa19.2■□□□□ 0.66
CTCF-202ENST00000401394 WFIKKN2Q8TEU8 576 aa19.2■□□□□ 0.66
CTCF-202ENST00000401394 NR4A3Q92570 626 aa19.2■□□□□ 0.66
CTCF-202ENST00000401394 MICU1Q9BPX6 476 aa19.2■□□□□ 0.66
CTCF-202ENST00000401394 SRA1Q9HD15 236 aaKnown RBP19.2■□□□□ 0.66
CTCF-202ENST00000401394 SDK1Q7Z5N4 2213 aa19.19■□□□□ 0.66
CTCF-202ENST00000401394 GOSR2O14653 212 aa19.19■□□□□ 0.66
CTCF-202ENST00000401394 GSTZ1O43708 216 aaPredicted RBP19.19■□□□□ 0.66
CTCF-202ENST00000401394 IGFALSP35858 605 aa19.19■□□□□ 0.66
CTCF-202ENST00000401394 TFF2Q03403 129 aa19.19■□□□□ 0.66
CTCF-202ENST00000401394 EIPR1Q53HC9 387 aa19.19■□□□□ 0.66
CTCF-202ENST00000401394 BEX5Q5H9J7 111 aa19.19■□□□□ 0.66
CTCF-202ENST00000401394 OR52R1Q8NGF1 315 aa19.19■□□□□ 0.66
CTCF-202ENST00000401394 OR52H1Q8NGJ2 320 aa19.19■□□□□ 0.66
CTCF-202ENST00000401394 MAFFQ9ULX9 164 aa19.19■□□□□ 0.66
CTCF-202ENST00000401394 CARNS1A5YM72 827 aa19.19■□□□□ 0.66
CTCF-202ENST00000401394 ZNF879B4DU55 563 aa19.19■□□□□ 0.66
CTCF-202ENST00000401394 KCNAB3O43448 404 aa19.19■□□□□ 0.66
CTCF-202ENST00000401394 TGM6O95932 706 aa19.19■□□□□ 0.66
CTCF-202ENST00000401394 PLATP00750 562 aa19.19■□□□□ 0.66
CTCF-202ENST00000401394 DDX6P26196 483 aaKnown RBP eCLIP19.19■□□□□ 0.66
CTCF-202ENST00000401394 LSSP48449 732 aa19.19■□□□□ 0.66
CTCF-202ENST00000401394 RNF44Q7L0R7 432 aa19.19■□□□□ 0.66
CTCF-202ENST00000401394 ZNF524Q96C55 264 aa19.19■□□□□ 0.66
CTCF-202ENST00000401394 OR2A5Q96R48 311 aa19.19■□□□□ 0.66
CTCF-202ENST00000401394 PPA2Q9H2U2 334 aa19.19■□□□□ 0.66
CTCF-202ENST00000401394 ZCCHC4Q9H5U6 513 aa19.19■□□□□ 0.66
CTCF-202ENST00000401394 INPP5EQ9NRR6 644 aa19.19■□□□□ 0.66
CTCF-202ENST00000401394 C19orf53Q9UNZ5 99 aaPredicted RBP19.19■□□□□ 0.66
CTCF-202ENST00000401394 GALR3O60755 368 aaPredicted RBP19.18■□□□□ 0.66
CTCF-202ENST00000401394 F13BP05160 661 aa19.18■□□□□ 0.66
CTCF-202ENST00000401394 CTRB1P17538 263 aa19.18■□□□□ 0.66
CTCF-202ENST00000401394 SPI1P17947 270 aa19.18■□□□□ 0.66
CTCF-202ENST00000401394 PON3Q15166 354 aa19.18■□□□□ 0.66
CTCF-202ENST00000401394 METTL11BQ5VVY1 283 aa19.18■□□□□ 0.66
CTCF-202ENST00000401394 CTRB2Q6GPI1 263 aa19.18■□□□□ 0.66
CTCF-202ENST00000401394 NDUFAF7Q7L592 441 aa19.18■□□□□ 0.66
CTCF-202ENST00000401394 NPEPL1Q8NDH3 523 aa19.18■□□□□ 0.66
CTCF-202ENST00000401394 TOR1AIP2Q8NFQ8 470 aa19.18■□□□□ 0.66
CTCF-202ENST00000401394 SLC25A28Q96A46 364 aa19.18■□□□□ 0.66
CTCF-202ENST00000401394 ZMAT3Q9HA38 289 aaKnown RBP19.18■□□□□ 0.66
CTCF-202ENST00000401394 V9GY05 133 aa19.18■□□□□ 0.66
CTCF-202ENST00000401394 GABARAPH6UMI1 98 aa19.18■□□□□ 0.66
CTCF-202ENST00000401394 AIPO00170 330 aa19.18■□□□□ 0.66
CTCF-202ENST00000401394 RLN2P04090 185 aa19.18■□□□□ 0.66
CTCF-202ENST00000401394 RPS4Y1P22090 263 aaKnown RBP19.18■□□□□ 0.66
CTCF-202ENST00000401394 PCGF3Q3KNV8 242 aa19.18■□□□□ 0.66
CTCF-202ENST00000401394 B3GNTL1Q67FW5 361 aaPredicted RBP19.18■□□□□ 0.66
CTCF-202ENST00000401394 IQCF2Q8IXL9 164 aa19.18■□□□□ 0.66
CTCF-202ENST00000401394 RNF113BQ8IZP6 322 aaKnown RBP19.18■□□□□ 0.66
CTCF-202ENST00000401394 TEX19Q8NA77 164 aa19.18■□□□□ 0.66
CTCF-202ENST00000401394 ATOH1Q92858 354 aaPredicted RBP19.18■□□□□ 0.66
CTCF-202ENST00000401394 GAL3ST3Q96A11 431 aa19.18■□□□□ 0.66
CTCF-202ENST00000401394 TMEM272A0A1B0GTI8 110 aa19.17■□□□□ 0.66
CTCF-202ENST00000401394 OR2M5A3KFT3 312 aa19.17■□□□□ 0.66
CTCF-202ENST00000401394 OR6C74A6NCV1 312 aa19.17■□□□□ 0.66
CTCF-202ENST00000401394 THBS1P07996 1170 aa19.17■□□□□ 0.66
CTCF-202ENST00000401394 CDKN2AP42771 156 aaKnown RBP19.17■□□□□ 0.66
CTCF-202ENST00000401394 TAS2R20P59543 309 aa19.17■□□□□ 0.66
CTCF-202ENST00000401394 TRAM1Q15629 374 aa19.17■□□□□ 0.66
CTCF-202ENST00000401394 STAC2Q6ZMT1 411 aa19.17■□□□□ 0.66
CTCF-202ENST00000401394 LRRC69Q6ZNQ3 347 aa19.17■□□□□ 0.66
CTCF-202ENST00000401394 MUC20Q8N307 709 aaPredicted RBP19.17■□□□□ 0.66
CTCF-202ENST00000401394 LHFPL5Q8TAF8 219 aa19.17■□□□□ 0.66
CTCF-202ENST00000401394 WNT2BQ93097 391 aa19.17■□□□□ 0.66
CTCF-202ENST00000401394 HDAC8Q9BY41 377 aa19.17■□□□□ 0.66
CTCF-202ENST00000401394 EXOSC3Q9NQT5 275 aaKnown RBP19.17■□□□□ 0.66
CTCF-202ENST00000401394 PHPT1Q9NRX4 125 aaPredicted RBP19.17■□□□□ 0.66
CTCF-202ENST00000401394 A0A1B0GUH1 482 aa19.17■□□□□ 0.66
CTCF-202ENST00000401394 ANKRD20A5PA0PJZ0 165 aa19.17■□□□□ 0.66
CTCF-202ENST00000401394 CREBL2O60519 120 aaPredicted RBP19.17■□□□□ 0.66
CTCF-202ENST00000401394 APOC3P02656 99 aa19.17■□□□□ 0.66
CTCF-202ENST00000401394 SLC35G6P0C7Q6 338 aa19.17■□□□□ 0.66
CTCF-202ENST00000401394 SLC6A6P31641 620 aa19.17■□□□□ 0.66
CTCF-202ENST00000401394 ARFIP1P53367 373 aa19.17■□□□□ 0.66
CTCF-202ENST00000401394 TMUB2Q71RG4 321 aa19.17■□□□□ 0.66
CTCF-202ENST00000401394 ELF4Q99607 663 aaPredicted RBP19.17■□□□□ 0.66
CTCF-202ENST00000401394 ACTR6Q9GZN1 396 aa19.17■□□□□ 0.66
CTCF-202ENST00000401394 SRMSQ9H3Y6 488 aa19.17■□□□□ 0.66
CTCF-202ENST00000401394 ICAM5Q9UMF0 924 aa19.17■□□□□ 0.66
CTCF-202ENST00000401394 SEC16AO15027 2179 aa19.17■□□□□ 0.66
CTCF-202ENST00000401394 BRINP1O60477 761 aa19.17■□□□□ 0.66
CTCF-202ENST00000401394 OR2T7P0C7T2 308 aa19.17■□□□□ 0.66
CTCF-202ENST00000401394 ACHEP22303 614 aa19.17■□□□□ 0.66
CTCF-202ENST00000401394 SORDQ00796 357 aa19.17■□□□□ 0.66
CTCF-202ENST00000401394 RPL22L1Q6P5R6 122 aaKnown RBP19.17■□□□□ 0.66
CTCF-202ENST00000401394 OVCH1Q7RTY7 1134 aa19.17■□□□□ 0.66
CTCF-202ENST00000401394 OR2T27Q8NH04 317 aa19.17■□□□□ 0.66
CTCF-202ENST00000401394 SPACA7Q96KW9 195 aa19.17■□□□□ 0.66
CTCF-202ENST00000401394 TTYH1Q9H313 450 aaPredicted RBP19.17■□□□□ 0.66
CTCF-202ENST00000401394 LHX6Q9UPM6 363 aa19.17■□□□□ 0.66
CTCF-202ENST00000401394 TICRRQ7Z2Z1 1910 aa19.16■□□□□ 0.66
CTCF-202ENST00000401394 VEGFBP49765 207 aa19.16■□□□□ 0.66
Retrieved 100 of 20,778 RNA–protein pairs in 52.6 ms