RNA–Protein interactions for RNA: ENST00000396828.8

NEDD8-202, Transcript of neural precursor cell expressed, developmentally down-regulated 8, humanhuman

TSL 2

Gene NEDD8, Length 626 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD8-202ENST00000396828 G3V2T6 193 aa9.18□□□□□ -0.94
NEDD8-202ENST00000396828 FRS3O43559 492 aa9.18□□□□□ -0.94
NEDD8-202ENST00000396828 EIF4E2O60573 245 aaKnown RBP9.18□□□□□ -0.94
NEDD8-202ENST00000396828 FMO6PO60774 539 aa9.18□□□□□ -0.94
NEDD8-202ENST00000396828 DIRAS1O95057 198 aa9.18□□□□□ -0.94
NEDD8-202ENST00000396828 GADD45GO95257 159 aa9.18□□□□□ -0.94
NEDD8-202ENST00000396828 UBTFL6P0CB48 400 aaPredicted RBP9.18□□□□□ -0.94
NEDD8-202ENST00000396828 ZNF23P17027 643 aa9.18□□□□□ -0.94
NEDD8-202ENST00000396828 RRM2P31350 389 aa9.18□□□□□ -0.94
NEDD8-202ENST00000396828 YAP1P46937 504 aaKnown RBP9.18□□□□□ -0.94
NEDD8-202ENST00000396828 COPZ1P61923 177 aa9.18□□□□□ -0.94
NEDD8-202ENST00000396828 SPIBQ01892 262 aa9.18□□□□□ -0.94
NEDD8-202ENST00000396828 KRTAP1-1Q07627 177 aa9.18□□□□□ -0.94
NEDD8-202ENST00000396828 ENTPD8Q5MY95 495 aa9.18□□□□□ -0.94
NEDD8-202ENST00000396828 ALKBH2Q6NS38 261 aa9.18□□□□□ -0.94
NEDD8-202ENST00000396828 HMBOX1Q6NT76 420 aa9.18□□□□□ -0.94
NEDD8-202ENST00000396828 C20orf204Q6ZNR8 217 aa9.18□□□□□ -0.94
NEDD8-202ENST00000396828 PLEKHM3Q6ZWE6 761 aa9.18□□□□□ -0.94
NEDD8-202ENST00000396828 COMTD1Q86VU5 262 aa9.18□□□□□ -0.94
NEDD8-202ENST00000396828 WFDC8Q8IUA0 241 aa9.18□□□□□ -0.94
NEDD8-202ENST00000396828 RBM45Q8IUH3 476 aaKnown RBP9.18□□□□□ -0.94
NEDD8-202ENST00000396828 ZDHHC13Q8IUH4 622 aa9.18□□□□□ -0.94
NEDD8-202ENST00000396828 GTPBP8Q8N3Z3 284 aaPredicted RBP9.18□□□□□ -0.94
NEDD8-202ENST00000396828 SVOPLQ8N434 492 aa9.18□□□□□ -0.94
NEDD8-202ENST00000396828 TMCO5AQ8N6Q1 288 aa9.18□□□□□ -0.94
NEDD8-202ENST00000396828 MAPK1IP1LQ8NDC0 245 aa9.18□□□□□ -0.94
NEDD8-202ENST00000396828 ICA1LQ8NDH6 482 aa9.18□□□□□ -0.94
NEDD8-202ENST00000396828 PIK3C3Q8NEB9 887 aa9.18□□□□□ -0.94
NEDD8-202ENST00000396828 FAM71CQ8NEG0 241 aa9.18□□□□□ -0.94
NEDD8-202ENST00000396828 OR6K3Q8NGY3 331 aa9.18□□□□□ -0.94
NEDD8-202ENST00000396828 CNOT9Q92600 299 aaKnown RBP9.18□□□□□ -0.94
NEDD8-202ENST00000396828 NEUROG1Q92886 237 aa9.18□□□□□ -0.94
NEDD8-202ENST00000396828 GMPPAQ96IJ6 420 aaPredicted RBP9.18□□□□□ -0.94
NEDD8-202ENST00000396828 PRRC1Q96M27 445 aa9.18□□□□□ -0.94
NEDD8-202ENST00000396828 EPYCQ99645 322 aa9.18□□□□□ -0.94
NEDD8-202ENST00000396828 C9orf16Q9BUW7 83 aa9.18□□□□□ -0.94
NEDD8-202ENST00000396828 RSPO3Q9BXY4 272 aaPredicted RBP9.18□□□□□ -0.94
NEDD8-202ENST00000396828 SRXN1Q9BYN0 137 aa9.18□□□□□ -0.94
NEDD8-202ENST00000396828 PRRG4Q9BZD6 226 aa9.18□□□□□ -0.94
NEDD8-202ENST00000396828 GSX2Q9BZM3 304 aa9.18□□□□□ -0.94
NEDD8-202ENST00000396828 ACTR6Q9GZN1 396 aa9.18□□□□□ -0.94
NEDD8-202ENST00000396828 VCXQ9H320 206 aa9.18□□□□□ -0.94
NEDD8-202ENST00000396828 TMEM27Q9HBJ8 222 aa9.18□□□□□ -0.94
NEDD8-202ENST00000396828 C8orf4Q9NR00 106 aa9.18□□□□□ -0.94
NEDD8-202ENST00000396828 SELENONQ9NZV5 590 aa9.18□□□□□ -0.94
NEDD8-202ENST00000396828 SAMHD1Q9Y3Z3 626 aaKnown RBP9.18□□□□□ -0.94
NEDD8-202ENST00000396828 J3KTA2 159 aa9.17□□□□□ -0.94
NEDD8-202ENST00000396828 TNFRSF11BO00300 401 aa9.17□□□□□ -0.94
NEDD8-202ENST00000396828 CASQ2O14958 399 aaPredicted RBP9.17□□□□□ -0.94
NEDD8-202ENST00000396828 PRSS23O95084 383 aa9.17□□□□□ -0.94
NEDD8-202ENST00000396828 OR5F1O95221 314 aa9.17□□□□□ -0.94
NEDD8-202ENST00000396828 PLGP00747 810 aaPredicted RBP9.17□□□□□ -0.94
NEDD8-202ENST00000396828 H1F0P07305 194 aaKnown RBP9.17□□□□□ -0.94
NEDD8-202ENST00000396828 LINGO3P0C6S8 592 aa9.17□□□□□ -0.94
NEDD8-202ENST00000396828 GKN3PP0CG01 181 aa9.17□□□□□ -0.94
NEDD8-202ENST00000396828 THRBP10828 461 aa9.17□□□□□ -0.94
NEDD8-202ENST00000396828 ZNF17P17021 662 aa9.17□□□□□ -0.94
NEDD8-202ENST00000396828 AGTR1P30556 359 aa9.17□□□□□ -0.94
NEDD8-202ENST00000396828 SFTPDP35247 375 aa9.17□□□□□ -0.94
NEDD8-202ENST00000396828 PTDSS1P48651 473 aaKnown RBP9.17□□□□□ -0.94
NEDD8-202ENST00000396828 CCR4P51679 360 aa9.17□□□□□ -0.94
NEDD8-202ENST00000396828 CDH12P55289 794 aa9.17□□□□□ -0.94
NEDD8-202ENST00000396828 RAC1P63000 192 aa9.17□□□□□ -0.94
NEDD8-202ENST00000396828 ST3GAL3Q11203 375 aa9.17□□□□□ -0.94
NEDD8-202ENST00000396828 SKP2Q13309 424 aa9.17□□□□□ -0.94
NEDD8-202ENST00000396828 PIN1Q13526 163 aaPredicted RBP9.17□□□□□ -0.94
NEDD8-202ENST00000396828 CBFBQ13951 182 aa9.17□□□□□ -0.94
NEDD8-202ENST00000396828 TOMM34Q15785 309 aaPredicted RBP9.17□□□□□ -0.94
NEDD8-202ENST00000396828 NPTX1Q15818 432 aa9.17□□□□□ -0.94
NEDD8-202ENST00000396828 NDUFAF6Q330K2 333 aa9.17□□□□□ -0.94
NEDD8-202ENST00000396828 IQCCQ4KMZ1 466 aa9.17□□□□□ -0.94
NEDD8-202ENST00000396828 BEX5Q5H9J7 111 aa9.17□□□□□ -0.94
NEDD8-202ENST00000396828 ZNF613Q6PF04 617 aa9.17□□□□□ -0.94
NEDD8-202ENST00000396828 CBLN3Q6UW01 205 aa9.17□□□□□ -0.94
NEDD8-202ENST00000396828 NUFIP2Q7Z417 695 aaKnown RBP9.17□□□□□ -0.94
NEDD8-202ENST00000396828 TSEN54Q7Z6J9 526 aaKnown RBP9.17□□□□□ -0.94
NEDD8-202ENST00000396828 HIPK1Q86Z02 1210 aa9.17□□□□□ -0.94
NEDD8-202ENST00000396828 TOR1AIP2Q8NFQ8 470 aa9.17□□□□□ -0.94
NEDD8-202ENST00000396828 OR4D11Q8NGI4 311 aa9.17□□□□□ -0.94
NEDD8-202ENST00000396828 OR2V1Q8NHB1 315 aa9.17□□□□□ -0.94
NEDD8-202ENST00000396828 OR5K1Q8NHB7 308 aa9.17□□□□□ -0.94
NEDD8-202ENST00000396828 B4GALNT2Q8NHY0 566 aa9.17□□□□□ -0.94
NEDD8-202ENST00000396828 ADAMTS16Q8TE57 1224 aa9.17□□□□□ -0.94
NEDD8-202ENST00000396828 ABHD3Q8WU67 409 aa9.17□□□□□ -0.94
NEDD8-202ENST00000396828 OSTF1Q92882 214 aa9.17□□□□□ -0.94
NEDD8-202ENST00000396828 NRBF2Q96F24 287 aa9.17□□□□□ -0.94
NEDD8-202ENST00000396828 CIB1Q99828 191 aa9.17□□□□□ -0.94
NEDD8-202ENST00000396828 TMEM204Q9BSN7 226 aa9.17□□□□□ -0.94
NEDD8-202ENST00000396828 OSBPL10Q9BXB5 764 aa9.17□□□□□ -0.94
NEDD8-202ENST00000396828 TRIM2Q9C040 744 aa9.17□□□□□ -0.94
NEDD8-202ENST00000396828 LAT2Q9GZY6 243 aa9.17□□□□□ -0.94
NEDD8-202ENST00000396828 NMNAT1Q9HAN9 279 aaPredicted RBP9.17□□□□□ -0.94
NEDD8-202ENST00000396828 ZNF701Q9NV72 531 aaPredicted RBP9.17□□□□□ -0.94
NEDD8-202ENST00000396828 RPS6KB2Q9UBS0 482 aa9.17□□□□□ -0.94
NEDD8-202ENST00000396828 PRDM4Q9UKN5 801 aa9.17□□□□□ -0.94
NEDD8-202ENST00000396828 TMCC3Q9ULS5 477 aa9.17□□□□□ -0.94
NEDD8-202ENST00000396828 OAZ3Q9UMX2 235 aa9.17□□□□□ -0.94
NEDD8-202ENST00000396828 CARD8Q9Y2G2 431 aa9.17□□□□□ -0.94
NEDD8-202ENST00000396828 EMC9Q9Y3B6 208 aa9.17□□□□□ -0.94
NEDD8-202ENST00000396828 U3KQV3 271 aa9.17□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 35.3 ms