RNA–Protein interactions for RNA: ENST00000394082.8

SNRPA1-202, Transcript of small nuclear ribonucleoprotein polypeptide A', humanhuman

TSL 1 (best)

Gene SNRPA1, Length 556 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNRPA1-202ENST00000394082 SLC46A3Q7Z3Q1 461 aa15.2■□□□□ 0.02
SNRPA1-202ENST00000394082 CCDC36Q8IYA8 594 aa15.2■□□□□ 0.02
SNRPA1-202ENST00000394082 CLIP4Q8N3C7 705 aa15.2■□□□□ 0.02
SNRPA1-202ENST00000394082 IL17RDQ8NFM7 739 aa15.2■□□□□ 0.02
SNRPA1-202ENST00000394082 MSI2Q96DH6 328 aaKnown RBP15.2■□□□□ 0.02
SNRPA1-202ENST00000394082 ITCHQ96J02 903 aa15.2■□□□□ 0.02
SNRPA1-202ENST00000394082 ALKBH3Q96Q83 286 aaPredicted RBP15.2■□□□□ 0.02
SNRPA1-202ENST00000394082 NELFAQ9H3P2 528 aa15.2■□□□□ 0.02
SNRPA1-202ENST00000394082 WDR55Q9H6Y2 383 aaPredicted RBP15.2■□□□□ 0.02
SNRPA1-202ENST00000394082 CACYBPQ9HB71 228 aaKnown RBP15.2■□□□□ 0.02
SNRPA1-202ENST00000394082 KCNK9Q9NPC2 374 aa15.2■□□□□ 0.02
SNRPA1-202ENST00000394082 ANK2Q01484 3957 aa15.2■□□□□ 0.02
SNRPA1-202ENST00000394082 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP15.2■□□□□ 0.022e-8■■■■■ 37.6
SNRPA1-202ENST00000394082 LOC100289279A0A1B0GTE1 492 aa15.19■□□□□ 0.02
SNRPA1-202ENST00000394082 OR2T1O43869 369 aa15.19■□□□□ 0.02
SNRPA1-202ENST00000394082 UPK3AO75631 287 aa15.19■□□□□ 0.02
SNRPA1-202ENST00000394082 ANP32DO95626 131 aa15.19■□□□□ 0.02
SNRPA1-202ENST00000394082 BMP2P12643 396 aa15.19■□□□□ 0.02
SNRPA1-202ENST00000394082 PRG2P13727 222 aa15.19■□□□□ 0.02
SNRPA1-202ENST00000394082 APEHP13798 732 aaKnown RBP15.19■□□□□ 0.02
SNRPA1-202ENST00000394082 CBR1P16152 277 aa15.19■□□□□ 0.02
SNRPA1-202ENST00000394082 ZNF23P17027 643 aa15.19■□□□□ 0.02
SNRPA1-202ENST00000394082 HNF1AP20823 631 aa15.19■□□□□ 0.02
SNRPA1-202ENST00000394082 GIFP27352 417 aa15.19■□□□□ 0.02
SNRPA1-202ENST00000394082 IDH3GP51553 393 aaPredicted RBP15.19■□□□□ 0.02
SNRPA1-202ENST00000394082 SLC18A1P54219 525 aa15.19■□□□□ 0.02
SNRPA1-202ENST00000394082 GGTLC2Q14390 218 aa15.19■□□□□ 0.02
SNRPA1-202ENST00000394082 KRTAP24-1Q3LI83 254 aa15.19■□□□□ 0.02
SNRPA1-202ENST00000394082 NEU4Q8WWR8 484 aaPredicted RBP15.19■□□□□ 0.02
SNRPA1-202ENST00000394082 TMEM19Q96HH6 336 aa15.19■□□□□ 0.02
SNRPA1-202ENST00000394082 FOXN4Q96NZ1 517 aa15.19■□□□□ 0.02
SNRPA1-202ENST00000394082 PTDSS2Q9BVG9 487 aa15.19■□□□□ 0.02
SNRPA1-202ENST00000394082 RAB1BQ9H0U4 201 aa15.19■□□□□ 0.02
SNRPA1-202ENST00000394082 IGHV4-61A0A0C4DH41 118 aa15.18■□□□□ 0.02
SNRPA1-202ENST00000394082 PNMTP11086 282 aa15.18■□□□□ 0.02
SNRPA1-202ENST00000394082 ZNF43P17038 809 aa15.18■□□□□ 0.02
SNRPA1-202ENST00000394082 ROR2Q01974 943 aaKnown RBP15.18■□□□□ 0.02
SNRPA1-202ENST00000394082 POU3F1Q03052 451 aaPredicted RBP15.18■□□□□ 0.02
SNRPA1-202ENST00000394082 EGR4Q05215 589 aa15.18■□□□□ 0.02
SNRPA1-202ENST00000394082 FADDQ13158 208 aa15.18■□□□□ 0.02
SNRPA1-202ENST00000394082 CEP85LQ5SZL2 805 aa15.18■□□□□ 0.02
SNRPA1-202ENST00000394082 FAM120AOSQ5T036 256 aa15.18■□□□□ 0.02
SNRPA1-202ENST00000394082 HHATQ5VTY9 493 aa15.18■□□□□ 0.02
SNRPA1-202ENST00000394082 NET1Q7Z628 596 aaPredicted RBP15.18■□□□□ 0.02
SNRPA1-202ENST00000394082 SERPINA11Q86U17 422 aa15.18■□□□□ 0.02
SNRPA1-202ENST00000394082 LSMEM1Q8N8F7 131 aa15.18■□□□□ 0.02
SNRPA1-202ENST00000394082 HPS1Q92902 700 aa15.18■□□□□ 0.02
SNRPA1-202ENST00000394082 ANKRD27Q96NW4 1050 aa15.18■□□□□ 0.02
SNRPA1-202ENST00000394082 OXGR1Q96P68 337 aa15.18■□□□□ 0.02
SNRPA1-202ENST00000394082 VRK1Q99986 396 aaPredicted RBP15.18■□□□□ 0.02
SNRPA1-202ENST00000394082 A4GALTQ9NPC4 353 aa15.18■□□□□ 0.02
SNRPA1-202ENST00000394082 B3GAT1Q9P2W7 334 aa15.18■□□□□ 0.02
SNRPA1-202ENST00000394082 SLC35F4A4IF30 521 aa15.17■□□□□ 0.02
SNRPA1-202ENST00000394082 SLC43A1O75387 559 aa15.17■□□□□ 0.02
SNRPA1-202ENST00000394082 ERCC1P07992 297 aaPredicted RBP15.17■□□□□ 0.02
SNRPA1-202ENST00000394082 ETS2P15036 469 aa15.17■□□□□ 0.02
SNRPA1-202ENST00000394082 ARR3P36575 388 aa15.17■□□□□ 0.02
SNRPA1-202ENST00000394082 WDR4P57081 412 aaKnown RBP15.17■□□□□ 0.02
SNRPA1-202ENST00000394082 LGALS3BPQ08380 585 aa15.17■□□□□ 0.02
SNRPA1-202ENST00000394082 SQLEQ14534 574 aa15.17■□□□□ 0.02
SNRPA1-202ENST00000394082 RGNQ15493 299 aa15.17■□□□□ 0.02
SNRPA1-202ENST00000394082 ZNF311Q5JNZ3 666 aa15.17■□□□□ 0.02
SNRPA1-202ENST00000394082 FAM69AQ5T7M9 428 aa15.17■□□□□ 0.02
SNRPA1-202ENST00000394082 ATG16L1Q676U5 607 aa15.17■□□□□ 0.02
SNRPA1-202ENST00000394082 ARIH2OSQ8N7S6 290 aa15.17■□□□□ 0.02
SNRPA1-202ENST00000394082 ADPRHL1Q8NDY3 354 aa15.17■□□□□ 0.02
SNRPA1-202ENST00000394082 DOK1Q99704 481 aa15.17■□□□□ 0.02
SNRPA1-202ENST00000394082 PAIP2Q9BPZ3 127 aaKnown RBP15.17■□□□□ 0.02
SNRPA1-202ENST00000394082 PARD6BQ9BYG5 372 aa15.17■□□□□ 0.02
SNRPA1-202ENST00000394082 BPESC1Q9GZL8 116 aa15.17■□□□□ 0.02
SNRPA1-202ENST00000394082 RAD21L1Q9H4I0 556 aa15.17■□□□□ 0.02
SNRPA1-202ENST00000394082 NOL12Q9UGY1 213 aaKnown RBP eCLIP15.17■□□□□ 0.02
SNRPA1-202ENST00000394082 RAB21Q9UL25 225 aa15.17■□□□□ 0.02
SNRPA1-202ENST00000394082 V9GYY5 206 aaPredicted RBP15.17■□□□□ 0.02
SNRPA1-202ENST00000394082 NR5A2O00482 541 aa15.16■□□□□ 0.02
SNRPA1-202ENST00000394082 AIM2O14862 343 aa15.16■□□□□ 0.02
SNRPA1-202ENST00000394082 AKAP8O43823 692 aaKnown RBP15.16■□□□□ 0.02
SNRPA1-202ENST00000394082 TACSTD2P09758 323 aa15.16■□□□□ 0.02
SNRPA1-202ENST00000394082 NPR2P20594 1047 aa15.16■□□□□ 0.02
SNRPA1-202ENST00000394082 GTF2E2P29084 291 aaKnown RBP15.16■□□□□ 0.02
SNRPA1-202ENST00000394082 CALCRP30988 508 aa15.16■□□□□ 0.02
SNRPA1-202ENST00000394082 PRKAR1BP31321 381 aa15.16■□□□□ 0.02
SNRPA1-202ENST00000394082 CLDN17P56750 224 aa15.16■□□□□ 0.02
SNRPA1-202ENST00000394082 HGFACQ04756 655 aa15.16■□□□□ 0.02
SNRPA1-202ENST00000394082 RPS26P11Q5JNZ5 115 aaPredicted RBP15.16■□□□□ 0.02
SNRPA1-202ENST00000394082 UGT2A3Q6UWM9 527 aa15.16■□□□□ 0.02
SNRPA1-202ENST00000394082 ANKS4BQ8N8V4 417 aa15.16■□□□□ 0.02
SNRPA1-202ENST00000394082 PIK3C3Q8NEB9 887 aa15.16■□□□□ 0.02
SNRPA1-202ENST00000394082 OR6S1Q8NH40 331 aa15.16■□□□□ 0.02
SNRPA1-202ENST00000394082 BBS10Q8TAM1 723 aa15.16■□□□□ 0.02
SNRPA1-202ENST00000394082 DNAJA4Q8WW22 397 aaPredicted RBP15.16■□□□□ 0.02
SNRPA1-202ENST00000394082 VPS33AQ96AX1 596 aa15.16■□□□□ 0.02
SNRPA1-202ENST00000394082 KTI12Q96EK9 354 aaPredicted RBP15.16■□□□□ 0.02
SNRPA1-202ENST00000394082 CENPHQ9H3R5 247 aa15.16■□□□□ 0.02
SNRPA1-202ENST00000394082 A0A096LPE4 126 aa15.15■□□□□ 0.02
SNRPA1-202ENST00000394082 A0A1W2PPZ6 126 aa15.15■□□□□ 0.02
SNRPA1-202ENST00000394082 STAMBPO95630 424 aa15.15■□□□□ 0.02
SNRPA1-202ENST00000394082 RPS5P46782 204 aaKnown RBP15.15■□□□□ 0.02
SNRPA1-202ENST00000394082 MRPL19P49406 292 aaKnown RBP15.15■□□□□ 0.02
SNRPA1-202ENST00000394082 EVX1P49640 407 aa15.15■□□□□ 0.02
Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms