RNA–Protein interactions for RNA: ENST00000389856.9

CCDC88C-203, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best) BASIC

Gene CCDC88C, Length 1,641 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-203ENST00000389856 PARP16Q8N5Y8 322 aa16.5■□□□□ 0.23
CCDC88C-203ENST00000389856 OR52N1Q8NH53 320 aa16.5■□□□□ 0.23
CCDC88C-203ENST00000389856 UFD1Q92890 307 aa16.5■□□□□ 0.23
CCDC88C-203ENST00000389856 CEP19Q96LK0 163 aa16.5■□□□□ 0.23
CCDC88C-203ENST00000389856 FRMD6Q96NE9 622 aa16.5■□□□□ 0.23
CCDC88C-203ENST00000389856 TNFRSF13CQ96RJ3 184 aa16.5■□□□□ 0.23
CCDC88C-203ENST00000389856 ANGPTL4Q9BY76 406 aa16.5■□□□□ 0.23
CCDC88C-203ENST00000389856 SMURF1Q9HCE7 757 aa16.5■□□□□ 0.23
CCDC88C-203ENST00000389856 MED11Q9P086 117 aa16.5■□□□□ 0.23
CCDC88C-203ENST00000389856 KLHL21Q9UJP4 597 aa16.5■□□□□ 0.23
CCDC88C-203ENST00000389856 SLC35F4A4IF30 521 aa16.49■□□□□ 0.23
CCDC88C-203ENST00000389856 ZNF208O43345 1280 aa16.49■□□□□ 0.23
CCDC88C-203ENST00000389856 DXOO77932 396 aaKnown RBP16.49■□□□□ 0.23
CCDC88C-203ENST00000389856 PEPDP12955 493 aa16.49■□□□□ 0.23
CCDC88C-203ENST00000389856 PRKCAP17252 672 aa16.49■□□□□ 0.23
CCDC88C-203ENST00000389856 GALP22466 123 aa16.49■□□□□ 0.23
CCDC88C-203ENST00000389856 F8A1P23610 371 aa16.49■□□□□ 0.23
CCDC88C-203ENST00000389856 RPL4P36578 427 aaKnown RBP16.49■□□□□ 0.23
CCDC88C-203ENST00000389856 RPS3AP61247 264 aaKnown RBP16.49■□□□□ 0.23
CCDC88C-203ENST00000389856 TOMM34Q15785 309 aaPredicted RBP16.49■□□□□ 0.23
CCDC88C-203ENST00000389856 ACER2Q5QJU3 275 aa16.49■□□□□ 0.23
CCDC88C-203ENST00000389856 MAMDC2Q7Z304 686 aaPredicted RBP16.49■□□□□ 0.23
CCDC88C-203ENST00000389856 NANOGNBQ7Z5D8 188 aa16.49■□□□□ 0.23
CCDC88C-203ENST00000389856 BCDIN3DQ7Z5W3 292 aaKnown RBP16.49■□□□□ 0.23
CCDC88C-203ENST00000389856 DTX1Q86Y01 620 aa16.49■□□□□ 0.23
CCDC88C-203ENST00000389856 CLEC1AQ8NC01 280 aa16.49■□□□□ 0.23
CCDC88C-203ENST00000389856 ADAMTS17Q8TE56 1095 aa16.49■□□□□ 0.23
CCDC88C-203ENST00000389856 DDIT4LQ96D03 193 aa16.49■□□□□ 0.23
CCDC88C-203ENST00000389856 THOC3Q96J01 351 aaKnown RBP16.49■□□□□ 0.23
CCDC88C-203ENST00000389856 SLC30A2Q9BRI3 323 aa16.49■□□□□ 0.23
CCDC88C-203ENST00000389856 RNF167Q9H6Y7 350 aa16.49■□□□□ 0.23
CCDC88C-203ENST00000389856 MCCC2Q9HCC0 563 aa16.49■□□□□ 0.23
CCDC88C-203ENST00000389856 CMC2Q9NRP2 79 aa16.49■□□□□ 0.23
CCDC88C-203ENST00000389856 HIF3AQ9Y2N7 669 aa16.49■□□□□ 0.23
CCDC88C-203ENST00000389856 GSTK1Q9Y2Q3 226 aa16.49■□□□□ 0.23
CCDC88C-203ENST00000389856 MYO15AQ9UKN7 3530 aa16.49■□□□□ 0.23
CCDC88C-203ENST00000389856 ETV2O00321 342 aaPredicted RBP16.48■□□□□ 0.23
CCDC88C-203ENST00000389856 IGHA1P01876 353 aa16.48■□□□□ 0.23
CCDC88C-203ENST00000389856 P04436 131 aa16.48■□□□□ 0.23
CCDC88C-203ENST00000389856 FGF9P31371 208 aaPredicted RBP16.48■□□□□ 0.23
CCDC88C-203ENST00000389856 GABRA5P31644 462 aa16.48■□□□□ 0.23
CCDC88C-203ENST00000389856 PTGDSP41222 190 aa16.48■□□□□ 0.23
CCDC88C-203ENST00000389856 CAPZA2P47755 286 aa16.48■□□□□ 0.23
CCDC88C-203ENST00000389856 RRADP55042 308 aa16.48■□□□□ 0.23
CCDC88C-203ENST00000389856 RPS4XP62701 263 aaKnown RBP16.48■□□□□ 0.23
CCDC88C-203ENST00000389856 BDH1Q02338 343 aa16.48■□□□□ 0.23
CCDC88C-203ENST00000389856 SLC25A53Q5H9E4 307 aa16.48■□□□□ 0.23
CCDC88C-203ENST00000389856 FCRLBQ6BAA4 426 aa16.48■□□□□ 0.23
CCDC88C-203ENST00000389856 ASCL5Q7RTU5 278 aa16.48■□□□□ 0.23
CCDC88C-203ENST00000389856 SLC22A16Q86VW1 577 aa16.48■□□□□ 0.23
CCDC88C-203ENST00000389856 PLCZ1Q86YW0 608 aa16.48■□□□□ 0.23
CCDC88C-203ENST00000389856 NEURL2Q9BR09 285 aa16.48■□□□□ 0.23
CCDC88C-203ENST00000389856 ARHGAP9Q9BRR9 750 aa16.48■□□□□ 0.23
CCDC88C-203ENST00000389856 SACM1LQ9NTJ5 587 aa16.48■□□□□ 0.23
CCDC88C-203ENST00000389856 CHRNA9Q9UGM1 479 aa16.48■□□□□ 0.23
CCDC88C-203ENST00000389856 CDV3Q9UKY7 258 aaKnown RBP16.48■□□□□ 0.23
CCDC88C-203ENST00000389856 APEHP13798 732 aaKnown RBP16.48■□□□□ 0.23
CCDC88C-203ENST00000389856 ADH6P28332 368 aa16.48■□□□□ 0.23
CCDC88C-203ENST00000389856 RPS19P39019 145 aaKnown RBP16.48■□□□□ 0.23
CCDC88C-203ENST00000389856 CYB561P49447 251 aa16.48■□□□□ 0.23
CCDC88C-203ENST00000389856 FOXK2Q01167 660 aa16.48■□□□□ 0.23
CCDC88C-203ENST00000389856 TBC1D25Q3MII6 688 aa16.48■□□□□ 0.23
CCDC88C-203ENST00000389856 DCAF10Q5QP82 559 aa16.48■□□□□ 0.23
CCDC88C-203ENST00000389856 FAM69AQ5T7M9 428 aa16.48■□□□□ 0.23
CCDC88C-203ENST00000389856 ABHD17BQ5VST6 288 aa16.48■□□□□ 0.23
CCDC88C-203ENST00000389856 C1orf140Q5VVS0 124 aa16.48■□□□□ 0.23
CCDC88C-203ENST00000389856 LIPKQ5VXJ0 399 aa16.48■□□□□ 0.23
CCDC88C-203ENST00000389856 OR5M10Q6IEU7 315 aa16.48■□□□□ 0.23
CCDC88C-203ENST00000389856 POMZP3Q6PJE2 187 aa16.48■□□□□ 0.23
CCDC88C-203ENST00000389856 ADGRG3Q86Y34 549 aa16.48■□□□□ 0.23
CCDC88C-203ENST00000389856 KLHL36Q8N4N3 616 aa16.48■□□□□ 0.23
CCDC88C-203ENST00000389856 FADS6Q8N9I5 356 aa16.48■□□□□ 0.23
CCDC88C-203ENST00000389856 OR2M3Q8NG83 312 aa16.48■□□□□ 0.23
CCDC88C-203ENST00000389856 SLC25A46Q96AG3 418 aa16.48■□□□□ 0.23
CCDC88C-203ENST00000389856 ZBTB8AQ96BR9 441 aa16.48■□□□□ 0.23
CCDC88C-203ENST00000389856 KCTD7Q96MP8 289 aa16.48■□□□□ 0.23
CCDC88C-203ENST00000389856 GPX7Q96SL4 187 aaPredicted RBP16.48■□□□□ 0.23
CCDC88C-203ENST00000389856 PHOX2BQ99453 314 aa16.48■□□□□ 0.23
CCDC88C-203ENST00000389856 ASCL3Q9NQ33 180 aa16.48■□□□□ 0.23
CCDC88C-203ENST00000389856 ABCB10Q9NRK6 738 aa16.48■□□□□ 0.23
CCDC88C-203ENST00000389856 INPP5EQ9NRR6 644 aa16.48■□□□□ 0.23
CCDC88C-203ENST00000389856 TXNL4BQ9NX01 149 aaKnown RBP16.48■□□□□ 0.23
CCDC88C-203ENST00000389856 IL20RAQ9UHF4 553 aa16.48■□□□□ 0.23
CCDC88C-203ENST00000389856 C2orf72A6NCS6 295 aa16.47■□□□□ 0.23
CCDC88C-203ENST00000389856 PRR23D1E9PI22 279 aaPredicted RBP16.47■□□□□ 0.23
CCDC88C-203ENST00000389856 IMPA2O14732 288 aa16.47■□□□□ 0.23
CCDC88C-203ENST00000389856 ARPC3O15145 178 aa16.47■□□□□ 0.23
CCDC88C-203ENST00000389856 AKAP8O43823 692 aaKnown RBP16.47■□□□□ 0.23
CCDC88C-203ENST00000389856 ASAH2BP0C7U1 165 aa16.47■□□□□ 0.23
CCDC88C-203ENST00000389856 LIMS3P0CW19 117 aa16.47■□□□□ 0.23
CCDC88C-203ENST00000389856 LIMS4P0CW20 117 aa16.47■□□□□ 0.23
CCDC88C-203ENST00000389856 PRR23D2P0DMB1 279 aaPredicted RBP16.47■□□□□ 0.23
CCDC88C-203ENST00000389856 GTF2E2P29084 291 aaKnown RBP16.47■□□□□ 0.23
CCDC88C-203ENST00000389856 FXYD6P3P58550 94 aa16.47■□□□□ 0.23
CCDC88C-203ENST00000389856 EGR4Q05215 589 aa16.47■□□□□ 0.23
CCDC88C-203ENST00000389856 Q0VFX4 171 aa16.47■□□□□ 0.23
CCDC88C-203ENST00000389856 GPR50Q13585 617 aa16.47■□□□□ 0.23
CCDC88C-203ENST00000389856 BICRALQ6AI39 1079 aa16.47■□□□□ 0.23
CCDC88C-203ENST00000389856 CD200R1LQ6Q8B3 271 aa16.47■□□□□ 0.23
CCDC88C-203ENST00000389856 CXXC5Q7LFL8 322 aaKnown RBP16.47■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms