RNA–Protein interactions for RNA: ENST00000380075.6

TRIM54-202, Transcript of tripartite motif containing 54, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TRIM54, Length 1,967 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM54-202ENST00000380075 ASAH2BP0C7U1 165 aa19.61■□□□□ 0.73
TRIM54-202ENST00000380075 TRAPPC2P0DI81 140 aa19.61■□□□□ 0.73
TRIM54-202ENST00000380075 TRAPPC2BP0DI82 140 aa19.61■□□□□ 0.73
TRIM54-202ENST00000380075 FOLR1P15328 257 aa19.61■□□□□ 0.73
TRIM54-202ENST00000380075 CSF2RBP32927 897 aa19.61■□□□□ 0.73
TRIM54-202ENST00000380075 ERVK-25P63136 954 aa19.61■□□□□ 0.73
TRIM54-202ENST00000380075 DAB2P98082 770 aa19.61■□□□□ 0.73
TRIM54-202ENST00000380075 EMC4Q5J8M3 183 aa19.61■□□□□ 0.73
TRIM54-202ENST00000380075 ARHGAP40Q5TG30 622 aa19.61■□□□□ 0.73
TRIM54-202ENST00000380075 SFXN4Q6P4A7 337 aa19.61■□□□□ 0.73
TRIM54-202ENST00000380075 CBLN3Q6UW01 205 aa19.61■□□□□ 0.73
TRIM54-202ENST00000380075 APOOLQ6UXV4 268 aa19.61■□□□□ 0.73
TRIM54-202ENST00000380075 JAZF1Q86VZ6 243 aa19.61■□□□□ 0.73
TRIM54-202ENST00000380075 RDH10Q8IZV5 341 aa19.61■□□□□ 0.73
TRIM54-202ENST00000380075 LRRC75AQ8NAA5 344 aa19.61■□□□□ 0.73
TRIM54-202ENST00000380075 SNX33Q8WV41 574 aa19.61■□□□□ 0.73
TRIM54-202ENST00000380075 PHYHIPQ92561 330 aa19.61■□□□□ 0.73
TRIM54-202ENST00000380075 ADOQ96SZ5 270 aa19.61■□□□□ 0.73
TRIM54-202ENST00000380075 ADAM19Q9H013 955 aa19.61■□□□□ 0.73
TRIM54-202ENST00000380075 C11orf54Q9H0W9 315 aaPredicted RBP19.61■□□□□ 0.73
TRIM54-202ENST00000380075 NPFFR2Q9Y5X5 522 aa19.61■□□□□ 0.73
TRIM54-202ENST00000380075 DCHS1Q96JQ0 3298 aa19.6■□□□□ 0.73
TRIM54-202ENST00000380075 COL5A1P20908 1838 aaPredicted RBP19.6■□□□□ 0.73
TRIM54-202ENST00000380075 OR6C68A6NDL8 312 aa19.6■□□□□ 0.73
TRIM54-202ENST00000380075 FAM25AB3EWG3 89 aa19.6■□□□□ 0.73
TRIM54-202ENST00000380075 FAM25CB3EWG5 89 aa19.6■□□□□ 0.73
TRIM54-202ENST00000380075 FAM25GB3EWG6 89 aa19.6■□□□□ 0.73
TRIM54-202ENST00000380075 DVL2O14641 736 aa19.6■□□□□ 0.73
TRIM54-202ENST00000380075 GATBO75879 557 aaKnown RBP19.6■□□□□ 0.73
TRIM54-202ENST00000380075 ARL6IP5O75915 188 aa19.6■□□□□ 0.73
TRIM54-202ENST00000380075 SIRPAP78324 504 aa19.6■□□□□ 0.73
TRIM54-202ENST00000380075 NSDHLQ15738 373 aa19.6■□□□□ 0.73
TRIM54-202ENST00000380075 MZT2BQ6NZ67 158 aa19.6■□□□□ 0.73
TRIM54-202ENST00000380075 NR2C2APQ86WQ0 139 aa19.6■□□□□ 0.73
TRIM54-202ENST00000380075 C10orf53Q8N6V4 93 aa19.6■□□□□ 0.73
TRIM54-202ENST00000380075 MOSPD2Q8NHP6 518 aa19.6■□□□□ 0.73
TRIM54-202ENST00000380075 ZNF563Q8TA94 476 aa19.6■□□□□ 0.73
TRIM54-202ENST00000380075 PELI1Q96FA3 418 aa19.6■□□□□ 0.73
TRIM54-202ENST00000380075 ZC3HAV1LQ96H79 300 aaKnown RBP19.6■□□□□ 0.73
TRIM54-202ENST00000380075 FAM210AQ96ND0 272 aa19.6■□□□□ 0.73
TRIM54-202ENST00000380075 GAL3ST4Q96RP7 486 aa19.6■□□□□ 0.73
TRIM54-202ENST00000380075 CDC6Q99741 560 aa19.6■□□□□ 0.73
TRIM54-202ENST00000380075 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP19.6■□□□□ 0.73
TRIM54-202ENST00000380075 KLHL1Q9NR64 748 aa19.6■□□□□ 0.73
TRIM54-202ENST00000380075 CYSLTR2Q9NS75 346 aa19.6■□□□□ 0.73
TRIM54-202ENST00000380075 NUP210LQ5VU65 1888 aa19.6■□□□□ 0.73
TRIM54-202ENST00000380075 GPRIN2O60269 458 aa19.59■□□□□ 0.73
TRIM54-202ENST00000380075 TSPAN2O60636 221 aa19.59■□□□□ 0.73
TRIM54-202ENST00000380075 ICOSLGO75144 302 aa19.59■□□□□ 0.73
TRIM54-202ENST00000380075 SDHAP31040 664 aa19.59■□□□□ 0.73
TRIM54-202ENST00000380075 UQCRC1P31930 480 aa19.59■□□□□ 0.73
TRIM54-202ENST00000380075 ACVR1BP36896 505 aa19.59■□□□□ 0.73
TRIM54-202ENST00000380075 TALDO1P37837 337 aa19.59■□□□□ 0.73
TRIM54-202ENST00000380075 TRIP6Q15654 476 aaKnown RBP19.59■□□□□ 0.73
TRIM54-202ENST00000380075 TP53I3Q53FA7 332 aa19.59■□□□□ 0.73
TRIM54-202ENST00000380075 ALG10Q5BKT4 473 aa19.59■□□□□ 0.73
TRIM54-202ENST00000380075 SNAP47Q5SQN1 464 aa19.59■□□□□ 0.73
TRIM54-202ENST00000380075 SLC29A4Q7RTT9 530 aa19.59■□□□□ 0.73
TRIM54-202ENST00000380075 FAM122BQ7Z309 247 aa19.59■□□□□ 0.73
TRIM54-202ENST00000380075 NLGN4YQ8NFZ3 816 aaPredicted RBP19.59■□□□□ 0.73
TRIM54-202ENST00000380075 OR1N1Q8NGS0 311 aa19.59■□□□□ 0.73
TRIM54-202ENST00000380075 HAVCR2Q8TDQ0 301 aa19.59■□□□□ 0.73
TRIM54-202ENST00000380075 RASD2Q96D21 266 aa19.59■□□□□ 0.73
TRIM54-202ENST00000380075 DPYSL5Q9BPU6 564 aa19.59■□□□□ 0.73
TRIM54-202ENST00000380075 ZNF768Q9H5H4 540 aaKnown RBP19.59■□□□□ 0.73
TRIM54-202ENST00000380075 ALG1L2C9J202 215 aa19.59■□□□□ 0.73
TRIM54-202ENST00000380075 BLOC1S5-TXNDC5H3BN57 136 aa19.59■□□□□ 0.73
TRIM54-202ENST00000380075 TOX3O15405 576 aaPredicted RBP19.59■□□□□ 0.73
TRIM54-202ENST00000380075 PLA2G10O15496 165 aa19.59■□□□□ 0.73
TRIM54-202ENST00000380075 AQP2P41181 271 aa19.59■□□□□ 0.73
TRIM54-202ENST00000380075 NAA10P41227 235 aaPredicted RBP19.59■□□□□ 0.73
TRIM54-202ENST00000380075 GDI2P50395 445 aaKnown RBP19.59■□□□□ 0.73
TRIM54-202ENST00000380075 DBPQ10586 325 aaPredicted RBP19.59■□□□□ 0.73
TRIM54-202ENST00000380075 CARTPTQ16568 116 aa19.59■□□□□ 0.73
TRIM54-202ENST00000380075 RPTNQ6XPR3 784 aa19.59■□□□□ 0.73
TRIM54-202ENST00000380075 C9orf40Q8IXQ3 194 aa19.59■□□□□ 0.73
TRIM54-202ENST00000380075 PLPP5Q8NEB5 264 aa19.59■□□□□ 0.73
TRIM54-202ENST00000380075 WWTR1Q9GZV5 400 aa19.59■□□□□ 0.73
TRIM54-202ENST00000380075 PPIL3Q9H2H8 161 aaKnown RBP19.59■□□□□ 0.73
TRIM54-202ENST00000380075 FKRPQ9H9S5 495 aa19.59■□□□□ 0.73
TRIM54-202ENST00000380075 SRPK3Q9UPE1 567 aa19.59■□□□□ 0.73
TRIM54-202ENST00000380075 TEX13CA0A0J9YWL9 993 aa19.58■□□□□ 0.73
TRIM54-202ENST00000380075 PRKNO60260 465 aaPredicted RBP19.58■□□□□ 0.73
TRIM54-202ENST00000380075 CDC40O60508 579 aaKnown RBP eCLIP19.58■□□□□ 0.73
TRIM54-202ENST00000380075 CCNKO75909 580 aa19.58■□□□□ 0.73
TRIM54-202ENST00000380075 PRKAR1AP10644 381 aa19.58■□□□□ 0.73
TRIM54-202ENST00000380075 SPTBP11277 2137 aa19.58■□□□□ 0.73
TRIM54-202ENST00000380075 CSRP1P21291 193 aaKnown RBP19.58■□□□□ 0.73
TRIM54-202ENST00000380075 MST1P26927 711 aa19.58■□□□□ 0.73
TRIM54-202ENST00000380075 THBS2P35442 1172 aa19.58■□□□□ 0.73
TRIM54-202ENST00000380075 MAP2K3P46734 347 aa19.58■□□□□ 0.73
TRIM54-202ENST00000380075 PNLIPRP2P54317 469 aa19.58■□□□□ 0.73
TRIM54-202ENST00000380075 EGR4Q05215 589 aa19.58■□□□□ 0.73
TRIM54-202ENST00000380075 LEG1Q6P5S2 330 aa19.58■□□□□ 0.73
TRIM54-202ENST00000380075 TRILQ7L0X0 811 aa19.58■□□□□ 0.73
TRIM54-202ENST00000380075 Q8N9G6 341 aaPredicted RBP19.58■□□□□ 0.73
TRIM54-202ENST00000380075 ENKURQ8TC29 256 aa19.58■□□□□ 0.73
TRIM54-202ENST00000380075 SMAP2Q8WU79 429 aaPredicted RBP19.58■□□□□ 0.73
TRIM54-202ENST00000380075 THAP4Q8WY91 577 aa19.58■□□□□ 0.73
TRIM54-202ENST00000380075 ZNF501Q96CX3 271 aaPredicted RBP19.58■□□□□ 0.73
Retrieved 100 of 20,778 RNA–protein pairs in 27.1 ms