RNA–Protein interactions for RNA: ENST00000373602.9

CCDC28B-201, Transcript of coiled-coil domain containing 28B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC28B, Length 1,089 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-201ENST00000373602 CDH2P19022 906 aaPredicted RBP18.99■□□□□ 0.63
CCDC28B-201ENST00000373602 PCBP3P57721 371 aaKnown RBP18.99■□□□□ 0.63
CCDC28B-201ENST00000373602 NCALDP61601 193 aa18.99■□□□□ 0.63
CCDC28B-201ENST00000373602 RBBP4Q09028 425 aa18.99■□□□□ 0.63
CCDC28B-201ENST00000373602 SELPLGQ14242 412 aa18.99■□□□□ 0.63
CCDC28B-201ENST00000373602 OR1Q1Q15612 314 aa18.99■□□□□ 0.63
CCDC28B-201ENST00000373602 METTL21CQ5VZV1 264 aa18.99■□□□□ 0.63
CCDC28B-201ENST00000373602 KLHL24Q6TFL4 600 aa18.99■□□□□ 0.63
CCDC28B-201ENST00000373602 OR1K1Q8NGR3 316 aa18.99■□□□□ 0.63
CCDC28B-201ENST00000373602 WFDC6Q9BQY6 131 aa18.99■□□□□ 0.63
CCDC28B-201ENST00000373602 LINC00470Q9BZP3 86 aa18.99■□□□□ 0.63
CCDC28B-201ENST00000373602 OBP2BQ9NPH6 170 aa18.99■□□□□ 0.63
CCDC28B-201ENST00000373602 SLC13A4Q9UKG4 626 aa18.99■□□□□ 0.63
CCDC28B-201ENST00000373602 RCE1Q9Y256 329 aa18.99■□□□□ 0.63
CCDC28B-201ENST00000373602 B3GALT5Q9Y2C3 310 aa18.99■□□□□ 0.63
CCDC28B-201ENST00000373602 NAV3Q8IVL0 2385 aa18.99■□□□□ 0.63
CCDC28B-201ENST00000373602 PLCE1Q9P212 2302 aa18.99■□□□□ 0.63
CCDC28B-201ENST00000373602 A0A087WUJ7 227 aa18.98■□□□□ 0.63
CCDC28B-201ENST00000373602 A0A0B4J2E0 115 aa18.98■□□□□ 0.63
CCDC28B-201ENST00000373602 A0A1B0GX12 115 aa18.98■□□□□ 0.63
CCDC28B-201ENST00000373602 M0R082 166 aa18.98■□□□□ 0.63
CCDC28B-201ENST00000373602 NDUFS7O75251 213 aa18.98■□□□□ 0.63
CCDC28B-201ENST00000373602 UPK3AO75631 287 aa18.98■□□□□ 0.63
CCDC28B-201ENST00000373602 ZNF432O94892 652 aa18.98■□□□□ 0.63
CCDC28B-201ENST00000373602 LGI1O95970 557 aa18.98■□□□□ 0.63
CCDC28B-201ENST00000373602 ZNF43P17038 809 aa18.98■□□□□ 0.63
CCDC28B-201ENST00000373602 PTNP21246 168 aa18.98■□□□□ 0.63
CCDC28B-201ENST00000373602 GRPRP30550 384 aa18.98■□□□□ 0.63
CCDC28B-201ENST00000373602 CLDN17P56750 224 aa18.98■□□□□ 0.63
CCDC28B-201ENST00000373602 MTPNP58546 118 aa18.98■□□□□ 0.63
CCDC28B-201ENST00000373602 VEZF1Q14119 521 aa18.98■□□□□ 0.63
CCDC28B-201ENST00000373602 CYP51A1Q16850 503 aa18.98■□□□□ 0.63
CCDC28B-201ENST00000373602 HIKESHIQ53FT3 197 aa18.98■□□□□ 0.63
CCDC28B-201ENST00000373602 C11orf71Q6IPW1 123 aa18.98■□□□□ 0.63
CCDC28B-201ENST00000373602 LINGO2Q7L985 606 aa18.98■□□□□ 0.63
CCDC28B-201ENST00000373602 OR6S1Q8NH40 331 aa18.98■□□□□ 0.63
CCDC28B-201ENST00000373602 ZNF417Q8TAU3 575 aa18.98■□□□□ 0.63
CCDC28B-201ENST00000373602 ALKBH3Q96Q83 286 aaPredicted RBP18.98■□□□□ 0.63
CCDC28B-201ENST00000373602 ZNF587Q96SQ5 575 aaPredicted RBP18.98■□□□□ 0.63
CCDC28B-201ENST00000373602 CBLN4Q9NTU7 201 aa18.98■□□□□ 0.63
CCDC28B-201ENST00000373602 SELENONQ9NZV5 590 aa18.98■□□□□ 0.63
CCDC28B-201ENST00000373602 KLHL14Q9P2G3 628 aa18.98■□□□□ 0.63
CCDC28B-201ENST00000373602 FN1P02751 2386 aaKnown RBP18.97■□□□□ 0.63
CCDC28B-201ENST00000373602 LOC102725191A0A1B0GVB3 256 aa18.97■□□□□ 0.63
CCDC28B-201ENST00000373602 ACVR1BP36896 505 aa18.97■□□□□ 0.63
CCDC28B-201ENST00000373602 NFYCQ13952 458 aa18.97■□□□□ 0.63
CCDC28B-201ENST00000373602 TBRG1Q3YBR2 411 aa18.97■□□□□ 0.63
CCDC28B-201ENST00000373602 ZNF544Q6NX49 715 aa18.97■□□□□ 0.63
CCDC28B-201ENST00000373602 DNM1P46Q6ZS02 220 aa18.97■□□□□ 0.63
CCDC28B-201ENST00000373602 H1FNTQ75WM6 255 aaPredicted RBP18.97■□□□□ 0.63
CCDC28B-201ENST00000373602 RANBP3LQ86VV4 465 aaPredicted RBP18.97■□□□□ 0.63
CCDC28B-201ENST00000373602 FBXL14Q8N1E6 418 aa18.97■□□□□ 0.63
CCDC28B-201ENST00000373602 MUC15Q8N387 334 aa18.97■□□□□ 0.63
CCDC28B-201ENST00000373602 SMYD1Q8NB12 490 aa18.97■□□□□ 0.63
CCDC28B-201ENST00000373602 ADPRHL1Q8NDY3 354 aa18.97■□□□□ 0.63
CCDC28B-201ENST00000373602 BCL2L2Q92843 193 aaPredicted RBP18.97■□□□□ 0.63
CCDC28B-201ENST00000373602 HS6ST2Q96MM7 605 aa18.97■□□□□ 0.63
CCDC28B-201ENST00000373602 KAT8Q9H7Z6 458 aaKnown RBP18.97■□□□□ 0.63
CCDC28B-201ENST00000373602 FKRPQ9H9S5 495 aa18.97■□□□□ 0.63
CCDC28B-201ENST00000373602 BARX1Q9HBU1 254 aaPredicted RBP18.97■□□□□ 0.63
CCDC28B-201ENST00000373602 GDF2Q9UK05 429 aaPredicted RBP18.97■□□□□ 0.63
CCDC28B-201ENST00000373602 NIPBLQ6KC79 2804 aaeCLIP18.97■□□□□ 0.63
CCDC28B-201ENST00000373602 CSPG4Q6UVK1 2322 aa18.96■□□□□ 0.63
CCDC28B-201ENST00000373602 M0QX08 132 aa18.96■□□□□ 0.63
CCDC28B-201ENST00000373602 PAX7P23759 505 aa18.96■□□□□ 0.63
CCDC28B-201ENST00000373602 FABP6P51161 128 aa18.96■□□□□ 0.63
CCDC28B-201ENST00000373602 MFSD13AQ14CX5 517 aa18.96■□□□□ 0.63
CCDC28B-201ENST00000373602 NRF1Q16656 503 aa18.96■□□□□ 0.63
CCDC28B-201ENST00000373602 HMBOX1Q6NT76 420 aa18.96■□□□□ 0.63
CCDC28B-201ENST00000373602 ANKK1Q8NFD2 765 aa18.96■□□□□ 0.63
CCDC28B-201ENST00000373602 MAGEE2Q8TD90 523 aaPredicted RBP18.96■□□□□ 0.63
CCDC28B-201ENST00000373602 SLC41A3Q96GZ6 507 aa18.96■□□□□ 0.63
CCDC28B-201ENST00000373602 ZNF317Q96PQ6 595 aaPredicted RBP18.96■□□□□ 0.63
CCDC28B-201ENST00000373602 EPYCQ99645 322 aa18.96■□□□□ 0.63
CCDC28B-201ENST00000373602 ARHGDIGQ99819 225 aa18.96■□□□□ 0.63
CCDC28B-201ENST00000373602 CACNG6Q9BXT2 260 aa18.96■□□□□ 0.63
CCDC28B-201ENST00000373602 CORINQ9Y5Q5 1042 aa18.96■□□□□ 0.63
CCDC28B-201ENST00000373602 HEATR1Q9H583 2144 aaKnown RBP18.95■□□□□ 0.62
CCDC28B-201ENST00000373602 NSD1Q96L73 2696 aaPredicted RBP18.95■□□□□ 0.62
CCDC28B-201ENST00000373602 RPL36A-HNRNPH2H7BZ11 118 aa18.95■□□□□ 0.62
CCDC28B-201ENST00000373602 FMO6PO60774 539 aa18.95■□□□□ 0.62
CCDC28B-201ENST00000373602 SLC43A1O75387 559 aa18.95■□□□□ 0.62
CCDC28B-201ENST00000373602 BGLAPP02818 100 aa18.95■□□□□ 0.62
CCDC28B-201ENST00000373602 C8BP07358 591 aa18.95■□□□□ 0.62
CCDC28B-201ENST00000373602 CDH12P55289 794 aa18.95■□□□□ 0.62
CCDC28B-201ENST00000373602 ROR2Q01974 943 aaKnown RBP18.95■□□□□ 0.62
CCDC28B-201ENST00000373602 C1DQ13901 141 aaKnown RBP18.95■□□□□ 0.62
CCDC28B-201ENST00000373602 DUSP7Q16829 419 aa18.95■□□□□ 0.62
CCDC28B-201ENST00000373602 SWT1Q5T5J6 900 aaKnown RBP18.95■□□□□ 0.62
CCDC28B-201ENST00000373602 SLC30A8Q8IWU4 369 aa18.95■□□□□ 0.62
CCDC28B-201ENST00000373602 RNF217Q8TC41 542 aa18.95■□□□□ 0.62
CCDC28B-201ENST00000373602 ADAD1Q96M93 576 aaKnown RBP18.95■□□□□ 0.62
CCDC28B-201ENST00000373602 TMEM120AQ9BXJ8 343 aa18.95■□□□□ 0.62
CCDC28B-201ENST00000373602 NELFAQ9H3P2 528 aa18.95■□□□□ 0.62
CCDC28B-201ENST00000373602 ATP23Q9Y6H3 246 aa18.95■□□□□ 0.62
CCDC28B-201ENST00000373602 ARPC4-TTLL3A0A0A6YYG9 625 aa18.94■□□□□ 0.62
CCDC28B-201ENST00000373602 RNF223E7ERA6 249 aa18.94■□□□□ 0.62
CCDC28B-201ENST00000373602 MS4A18H0YCH9 400 aa18.94■□□□□ 0.62
CCDC28B-201ENST00000373602 M0R3H8 397 aa18.94■□□□□ 0.62
CCDC28B-201ENST00000373602 FBP2O00757 339 aa18.94■□□□□ 0.62
Retrieved 100 of 20,778 RNA–protein pairs in 28.1 ms