RNA–Protein interactions for RNA: ENST00000348544.4

VPS39-202, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS39, Length 2,661 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-202ENST00000348544 DHCR7Q9UBM7 475 aaKnown RBP6.22□□□□□ -1.41
VPS39-202ENST00000348544 LSM7Q9UK45 103 aaKnown RBP6.22□□□□□ -1.41
VPS39-202ENST00000348544 MKL2Q9ULH7 1088 aa6.22□□□□□ -1.41
VPS39-202ENST00000348544 CARHSP1Q9Y2V2 147 aaKnown RBP6.22□□□□□ -1.41
VPS39-202ENST00000348544 LOC105378220A0A1B0GUY1 285 aaPredicted RBP6.22□□□□□ -1.41
VPS39-202ENST00000348544 KANTRA0A1W2PQU2 76 aa6.22□□□□□ -1.41
VPS39-202ENST00000348544 TSPAN11A1L157 253 aa6.22□□□□□ -1.41
VPS39-202ENST00000348544 GRM6O15303 877 aa6.22□□□□□ -1.41
VPS39-202ENST00000348544 SPINT1O43278 529 aa6.22□□□□□ -1.41
VPS39-202ENST00000348544 EIF1BO60739 113 aaKnown RBP6.22□□□□□ -1.41
VPS39-202ENST00000348544 PAPLNO95428 1278 aa6.22□□□□□ -1.41
VPS39-202ENST00000348544 CD1AP06126 327 aa6.22□□□□□ -1.41
VPS39-202ENST00000348544 CALCBP10092 127 aa6.22□□□□□ -1.41
VPS39-202ENST00000348544 NFYBP25208 207 aa6.22□□□□□ -1.41
VPS39-202ENST00000348544 EIF1P41567 113 aaKnown RBP6.22□□□□□ -1.41
VPS39-202ENST00000348544 EFNB2P52799 333 aa6.22□□□□□ -1.41
VPS39-202ENST00000348544 METAP1P53582 386 aa6.22□□□□□ -1.41
VPS39-202ENST00000348544 PNLIPRP2P54317 469 aa6.22□□□□□ -1.41
VPS39-202ENST00000348544 SNRPEP62304 92 aaKnown RBP6.22□□□□□ -1.41
VPS39-202ENST00000348544 ACTA2P62736 377 aa6.22□□□□□ -1.41
VPS39-202ENST00000348544 ACTG2P63267 376 aa6.22□□□□□ -1.41
VPS39-202ENST00000348544 CSNK1G2P78368 415 aa6.22□□□□□ -1.41
VPS39-202ENST00000348544 STX4Q12846 297 aa6.22□□□□□ -1.41
VPS39-202ENST00000348544 HABP2Q14520 560 aaPredicted RBP6.22□□□□□ -1.41
VPS39-202ENST00000348544 OR1Q1Q15612 314 aa6.22□□□□□ -1.41
VPS39-202ENST00000348544 NDUFAF6Q330K2 333 aa6.22□□□□□ -1.41
VPS39-202ENST00000348544 PLEKHN1Q494U1 663 aaPredicted RBP6.22□□□□□ -1.41
VPS39-202ENST00000348544 PAN3Q58A45 887 aaKnown RBP6.22□□□□□ -1.41
VPS39-202ENST00000348544 GLT8D1Q68CQ7 371 aa6.22□□□□□ -1.41
VPS39-202ENST00000348544 TMEM215Q68D42 235 aa6.22□□□□□ -1.41
VPS39-202ENST00000348544 H3F3CQ6NXT2 135 aa6.22□□□□□ -1.41
VPS39-202ENST00000348544 TMEM71Q6P5X7 295 aa6.22□□□□□ -1.41
VPS39-202ENST00000348544 STAC2Q6ZMT1 411 aa6.22□□□□□ -1.41
VPS39-202ENST00000348544 ZNF704Q6ZNC4 412 aaPredicted RBP6.22□□□□□ -1.41
VPS39-202ENST00000348544 OR4C6Q8NH72 309 aa6.22□□□□□ -1.41
VPS39-202ENST00000348544 RPS4Y2Q8TD47 263 aa6.22□□□□□ -1.41
VPS39-202ENST00000348544 SNX33Q8WV41 574 aa6.22□□□□□ -1.41
VPS39-202ENST00000348544 DVL3Q92997 716 aaPredicted RBP6.22□□□□□ -1.41
VPS39-202ENST00000348544 GPR174Q9BXC1 333 aa6.22□□□□□ -1.41
VPS39-202ENST00000348544 ACTRT3Q9BYD9 372 aa6.22□□□□□ -1.41
VPS39-202ENST00000348544 C1orf198Q9H425 327 aa6.22□□□□□ -1.41
VPS39-202ENST00000348544 POFUT1Q9H488 388 aa6.22□□□□□ -1.41
VPS39-202ENST00000348544 GAREM1Q9H706 876 aa6.22□□□□□ -1.41
VPS39-202ENST00000348544 CXXC1Q9P0U4 656 aaPredicted RBP6.22□□□□□ -1.41
VPS39-202ENST00000348544 USP36Q9P275 1121 aaKnown RBP6.22□□□□□ -1.41
VPS39-202ENST00000348544 ZNF629Q9UEG4 869 aaPredicted RBP6.22□□□□□ -1.41
VPS39-202ENST00000348544 LRFN2Q9ULH4 789 aa6.22□□□□□ -1.41
VPS39-202ENST00000348544 LRRK1Q38SD2 2015 aa6.22□□□□□ -1.41
VPS39-202ENST00000348544 A0A1B0GTI1 187 aa6.22□□□□□ -1.41
VPS39-202ENST00000348544 OR5H14A6NHG9 310 aa6.22□□□□□ -1.41
VPS39-202ENST00000348544 RBBP9O75884 186 aa6.22□□□□□ -1.41
VPS39-202ENST00000348544 SNAPINO95295 136 aa6.22□□□□□ -1.41
VPS39-202ENST00000348544 CD3DP04234 171 aa6.22□□□□□ -1.41
VPS39-202ENST00000348544 OR2T7P0C7T2 308 aa6.22□□□□□ -1.41
VPS39-202ENST00000348544 SMIM6P0DI80 62 aa6.22□□□□□ -1.41
VPS39-202ENST00000348544 CSF2RBP32927 897 aa6.22□□□□□ -1.41
VPS39-202ENST00000348544 NR0B1P51843 470 aaKnown RBP6.22□□□□□ -1.41
VPS39-202ENST00000348544 BLOC1S1P78537 153 aa6.22□□□□□ -1.41
VPS39-202ENST00000348544 HTRA4P83105 476 aaPredicted RBP6.22□□□□□ -1.41
VPS39-202ENST00000348544 PLAURQ03405 335 aa6.22□□□□□ -1.41
VPS39-202ENST00000348544 POU4F2Q12837 409 aa6.22□□□□□ -1.41
VPS39-202ENST00000348544 ILF3Q12906 894 aaKnown RBP eCLIP6.22□□□□□ -1.41
VPS39-202ENST00000348544 ZNF345Q14585 488 aa6.22□□□□□ -1.41
VPS39-202ENST00000348544 ATXN7L3Q14CW9 347 aaPredicted RBP6.22□□□□□ -1.41
VPS39-202ENST00000348544 TEAD2Q15562 447 aa6.22□□□□□ -1.41
VPS39-202ENST00000348544 TCTN1Q2MV58 587 aa6.22□□□□□ -1.41
VPS39-202ENST00000348544 FAM109BQ6ICB4 259 aaPredicted RBP6.22□□□□□ -1.41
VPS39-202ENST00000348544 TMEM92Q6UXU6 159 aa6.22□□□□□ -1.41
VPS39-202ENST00000348544 USP50Q70EL3 339 aaPredicted RBP6.22□□□□□ -1.41
VPS39-202ENST00000348544 GAREM2Q75VX8 874 aa6.22□□□□□ -1.41
VPS39-202ENST00000348544 TMEM25Q86YD3 366 aa6.22□□□□□ -1.41
VPS39-202ENST00000348544 DCUN1D3Q8IWE4 304 aa6.22□□□□□ -1.41
VPS39-202ENST00000348544 BEST3Q8N1M1 668 aa6.22□□□□□ -1.41
VPS39-202ENST00000348544 LINC01555Q8NAE3 123 aa6.22□□□□□ -1.41
VPS39-202ENST00000348544 TMIEQ8NEW7 156 aa6.22□□□□□ -1.41
VPS39-202ENST00000348544 STEAP2Q8NFT2 490 aa6.22□□□□□ -1.41
VPS39-202ENST00000348544 OR52E2Q8NGJ4 325 aa6.22□□□□□ -1.41
VPS39-202ENST00000348544 OR4A4PQ8NGN8 299 aa6.22□□□□□ -1.41
VPS39-202ENST00000348544 OR2T27Q8NH04 317 aa6.22□□□□□ -1.41
VPS39-202ENST00000348544 OR4K13Q8NH42 304 aa6.22□□□□□ -1.41
VPS39-202ENST00000348544 SLC22A8Q8TCC7 542 aa6.22□□□□□ -1.41
VPS39-202ENST00000348544 CXorf40AQ8TE69 158 aa6.22□□□□□ -1.41
VPS39-202ENST00000348544 CYB5D2Q8WUJ1 264 aa6.22□□□□□ -1.41
VPS39-202ENST00000348544 EDARADDQ8WWZ3 215 aa6.22□□□□□ -1.41
VPS39-202ENST00000348544 MOAP1Q96BY2 351 aa6.22□□□□□ -1.41
VPS39-202ENST00000348544 DTD2Q96FN9 168 aa6.22□□□□□ -1.41
VPS39-202ENST00000348544 ZNF681Q96N22 645 aa6.22□□□□□ -1.41
VPS39-202ENST00000348544 TNFRSF13CQ96RJ3 184 aa6.22□□□□□ -1.41
VPS39-202ENST00000348544 CNN2Q99439 309 aaKnown RBP6.22□□□□□ -1.41
VPS39-202ENST00000348544 ZNF559Q9BR84 538 aa6.22□□□□□ -1.41
VPS39-202ENST00000348544 ZNF251Q9BRH9 671 aa6.22□□□□□ -1.41
VPS39-202ENST00000348544 PTDSS2Q9BVG9 487 aa6.22□□□□□ -1.41
VPS39-202ENST00000348544 DPEP2Q9H4A9 486 aa6.22□□□□□ -1.41
VPS39-202ENST00000348544 EXO5Q9H790 373 aa6.22□□□□□ -1.41
VPS39-202ENST00000348544 TRPV4Q9HBA0 871 aa6.22□□□□□ -1.41
VPS39-202ENST00000348544 ACKR4Q9NPB9 350 aa6.22□□□□□ -1.41
VPS39-202ENST00000348544 ZFP57Q9NU63 452 aa6.22□□□□□ -1.41
VPS39-202ENST00000348544 KCNE5Q9UJ90 142 aa6.22□□□□□ -1.41
VPS39-202ENST00000348544 FBXO4Q9UKT5 387 aa6.22□□□□□ -1.41
VPS39-202ENST00000348544 WDR45Q9Y484 360 aa6.22□□□□□ -1.41
Retrieved 100 of 20,778 RNA–protein pairs in 35.5 ms