RNA–Protein interactions for RNA: ENST00000333496.14

CLN3-201, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,608 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-201ENST00000333496 IL32P24001 234 aa13.96□□□□□ -0.17
CLN3-201ENST00000333496 LIPEQ05469 1076 aa13.96□□□□□ -0.17
CLN3-201ENST00000333496 TAF11Q15544 211 aa13.96□□□□□ -0.17
CLN3-201ENST00000333496 TAB1Q15750 504 aa13.96□□□□□ -0.17
CLN3-201ENST00000333496 SEZ6L2Q6UXD5 910 aa13.96□□□□□ -0.17
CLN3-201ENST00000333496 CREB3L2Q70SY1 520 aa13.96□□□□□ -0.17
CLN3-201ENST00000333496 BHLHA15Q7RTS1 189 aaPredicted RBP13.96□□□□□ -0.17
CLN3-201ENST00000333496 EPHX4Q8IUS5 362 aa13.96□□□□□ -0.17
CLN3-201ENST00000333496 ZNF433Q8N7K0 673 aaPredicted RBP13.96□□□□□ -0.17
CLN3-201ENST00000333496 STMN2Q93045 179 aa13.96□□□□□ -0.17
CLN3-201ENST00000333496 ZNF570Q96NI8 536 aa13.96□□□□□ -0.17
CLN3-201ENST00000333496 SLC7A10Q9NS82 523 aa13.96□□□□□ -0.17
CLN3-201ENST00000333496 SELENONQ9NZV5 590 aa13.96□□□□□ -0.17
CLN3-201ENST00000333496 B3GAT1Q9P2W7 334 aa13.96□□□□□ -0.17
CLN3-201ENST00000333496 NKX1-2Q9UD57 310 aaPredicted RBP13.96□□□□□ -0.17
CLN3-201ENST00000333496 MALT1Q9UDY8 824 aa13.96□□□□□ -0.17
CLN3-201ENST00000333496 CADP27708 2225 aa13.95□□□□□ -0.18
CLN3-201ENST00000333496 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP13.95□□□□□ -0.18
CLN3-201ENST00000333496 M0R082 166 aa13.95□□□□□ -0.18
CLN3-201ENST00000333496 PDLIM1O00151 329 aa13.95□□□□□ -0.18
CLN3-201ENST00000333496 VAMP5O95183 116 aa13.95□□□□□ -0.18
CLN3-201ENST00000333496 BGLAPP02818 100 aa13.95□□□□□ -0.18
CLN3-201ENST00000333496 CBLP22681 906 aa13.95□□□□□ -0.18
CLN3-201ENST00000333496 GRPRP30550 384 aa13.95□□□□□ -0.18
CLN3-201ENST00000333496 IST1P53990 364 aa13.95□□□□□ -0.18
CLN3-201ENST00000333496 SLC25A3Q00325 362 aa13.95□□□□□ -0.18
CLN3-201ENST00000333496 FAPQ12884 760 aa13.95□□□□□ -0.18
CLN3-201ENST00000333496 LRRC23Q53EV4 343 aaPredicted RBP13.95□□□□□ -0.18
CLN3-201ENST00000333496 CYBRD1Q53TN4 286 aa13.95□□□□□ -0.18
CLN3-201ENST00000333496 TSPO2Q5TGU0 170 aa13.95□□□□□ -0.18
CLN3-201ENST00000333496 CARM1Q86X55 608 aa13.95□□□□□ -0.18
CLN3-201ENST00000333496 WFDC8Q8IUA0 241 aa13.95□□□□□ -0.18
CLN3-201ENST00000333496 UBE2J2Q8N2K1 259 aa13.95□□□□□ -0.18
CLN3-201ENST00000333496 ZNF417Q8TAU3 575 aa13.95□□□□□ -0.18
CLN3-201ENST00000333496 PROX1Q92786 737 aa13.95□□□□□ -0.18
CLN3-201ENST00000333496 MOGAT1Q96PD6 335 aa13.95□□□□□ -0.18
CLN3-201ENST00000333496 ZNF587Q96SQ5 575 aaPredicted RBP13.95□□□□□ -0.18
CLN3-201ENST00000333496 TMEM43Q9BTV4 400 aa13.95□□□□□ -0.18
CLN3-201ENST00000333496 PARPBPQ9NWS1 579 aa13.95□□□□□ -0.18
CLN3-201ENST00000333496 ABCD2Q9UBJ2 740 aa13.95□□□□□ -0.18
CLN3-201ENST00000333496 BAG5Q9UL15 447 aa13.95□□□□□ -0.18
CLN3-201ENST00000333496 RASD1Q9Y272 281 aa13.95□□□□□ -0.18
CLN3-201ENST00000333496 AP3M1Q9Y2T2 418 aa13.95□□□□□ -0.18
CLN3-201ENST00000333496 LRRC42Q9Y546 428 aa13.95□□□□□ -0.18
CLN3-201ENST00000333496 ROS1P08922 2347 aa13.95□□□□□ -0.18
CLN3-201ENST00000333496 HEATR1Q9H583 2144 aaKnown RBP13.94□□□□□ -0.18
CLN3-201ENST00000333496 LRRN3E7EW58 273 aa13.94□□□□□ -0.18
CLN3-201ENST00000333496 ENTPD5O75356 428 aa13.94□□□□□ -0.18
CLN3-201ENST00000333496 CIB2O75838 187 aa13.94□□□□□ -0.18
CLN3-201ENST00000333496 ITGA5P08648 1049 aa13.94□□□□□ -0.18
CLN3-201ENST00000333496 ACADSP16219 412 aa13.94□□□□□ -0.18
CLN3-201ENST00000333496 OR1E2P47887 323 aa13.94□□□□□ -0.18
CLN3-201ENST00000333496 TESK1Q15569 626 aa13.94□□□□□ -0.18
CLN3-201ENST00000333496 AAED1Q7RTV5 226 aa13.94□□□□□ -0.18
CLN3-201ENST00000333496 OR6S1Q8NH40 331 aa13.94□□□□□ -0.18
CLN3-201ENST00000333496 SLC41A3Q96GZ6 507 aa13.94□□□□□ -0.18
CLN3-201ENST00000333496 PRSS27Q9BQR3 290 aa13.94□□□□□ -0.18
CLN3-201ENST00000333496 ALG2Q9H553 416 aa13.94□□□□□ -0.18
CLN3-201ENST00000333496 ASB6Q9NWX5 421 aa13.94□□□□□ -0.18
CLN3-201ENST00000333496 SLC7A7Q9UM01 511 aa13.94□□□□□ -0.18
CLN3-201ENST00000333496 PLEKHA6Q9Y2H5 1048 aa13.94□□□□□ -0.18
CLN3-201ENST00000333496 TRAPPC13A5PLN9 417 aa13.93□□□□□ -0.18
CLN3-201ENST00000333496 MS4A18H0YCH9 400 aa13.93□□□□□ -0.18
CLN3-201ENST00000333496 GTF2E2P29084 291 aaKnown RBP13.93□□□□□ -0.18
CLN3-201ENST00000333496 VHLP40337 213 aa13.93□□□□□ -0.18
CLN3-201ENST00000333496 GSK3BP49841 420 aa13.93□□□□□ -0.18
CLN3-201ENST00000333496 SELENOPP49908 381 aa13.93□□□□□ -0.18
CLN3-201ENST00000333496 PSME3P61289 254 aa13.93□□□□□ -0.18
CLN3-201ENST00000333496 SELENOWP63302 87 aa13.93□□□□□ -0.18
CLN3-201ENST00000333496 MS4A18Q3C1V0 323 aa13.93□□□□□ -0.18
CLN3-201ENST00000333496 BEX5Q5H9J7 111 aa13.93□□□□□ -0.18
CLN3-201ENST00000333496 PAMR1Q6UXH9 720 aa13.93□□□□□ -0.18
CLN3-201ENST00000333496 LURAP1LQ8IV03 231 aa13.93□□□□□ -0.18
CLN3-201ENST00000333496 HSD17B8Q92506 261 aa13.93□□□□□ -0.18
CLN3-201ENST00000333496 PLPPR2Q96GM1 343 aa13.93□□□□□ -0.18
CLN3-201ENST00000333496 OXGR1Q96P68 337 aa13.93□□□□□ -0.18
CLN3-201ENST00000333496 EPYCQ99645 322 aa13.93□□□□□ -0.18
CLN3-201ENST00000333496 ZNF426Q9BUY5 554 aa13.93□□□□□ -0.18
CLN3-201ENST00000333496 CCM2LQ9NUG4 571 aaPredicted RBP13.93□□□□□ -0.18
CLN3-201ENST00000333496 TAS2R16Q9NYV7 291 aa13.93□□□□□ -0.18
CLN3-201ENST00000333496 B3GALT5Q9Y2C3 310 aa13.93□□□□□ -0.18
CLN3-201ENST00000333496 PRRC2AP48634 2157 aaKnown RBP13.93□□□□□ -0.18
CLN3-201ENST00000333496 ENO4A6NNW6 628 aa13.93□□□□□ -0.18
CLN3-201ENST00000333496 RAD51DO75771 328 aa13.93□□□□□ -0.18
CLN3-201ENST00000333496 PLAUP00749 431 aa13.93□□□□□ -0.18
CLN3-201ENST00000333496 IFNA14P01570 189 aa13.93□□□□□ -0.18
CLN3-201ENST00000333496 GGT1P19440 569 aa13.93□□□□□ -0.18
CLN3-201ENST00000333496 PTDSS1P48651 473 aaKnown RBP13.93□□□□□ -0.18
CLN3-201ENST00000333496 LGALS3BPQ08380 585 aa13.93□□□□□ -0.18
CLN3-201ENST00000333496 ALKBH2Q6NS38 261 aa13.93□□□□□ -0.18
CLN3-201ENST00000333496 H1FNTQ75WM6 255 aaPredicted RBP13.93□□□□□ -0.18
CLN3-201ENST00000333496 NINJ1Q92982 152 aa13.93□□□□□ -0.18
CLN3-201ENST00000333496 TPD52L3Q96J77 140 aa13.93□□□□□ -0.18
CLN3-201ENST00000333496 USB1Q9BQ65 265 aaKnown RBP13.93□□□□□ -0.18
CLN3-201ENST00000333496 SLCO5A1Q9H2Y9 848 aa13.93□□□□□ -0.18
CLN3-201ENST00000333496 NDE1Q9NXR1 346 aa13.93□□□□□ -0.18
CLN3-201ENST00000333496 STX18Q9P2W9 335 aaKnown RBP13.93□□□□□ -0.18
CLN3-201ENST00000333496 UPB1Q9UBR1 384 aa13.93□□□□□ -0.18
CLN3-201ENST00000333496 CXCR6O00574 342 aa13.92□□□□□ -0.18
CLN3-201ENST00000333496 HPRP00739 348 aa13.92□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 44 ms