RNA–Protein interactions for RNA: ENST00000332797.10

CCDC28A-201, Transcript of coiled-coil domain containing 28A, humanhuman

TSL 1 (best) BASIC

Gene CCDC28A, Length 1,496 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28A-201ENST00000332797 C20orf141Q9NUB4 165 aa14.09□□□□□ -0.15
CCDC28A-201ENST00000332797 MRPL39Q9NYK5 338 aaKnown RBP14.09□□□□□ -0.15
CCDC28A-201ENST00000332797 ELOVL5Q9NYP7 299 aa14.09□□□□□ -0.15
CCDC28A-201ENST00000332797 PRSS50Q9UI38 385 aa14.09□□□□□ -0.15
CCDC28A-201ENST00000332797 FLNBO75369 2602 aaKnown RBP14.09□□□□□ -0.15
CCDC28A-201ENST00000332797 GSC2O15499 205 aa14.08□□□□□ -0.16
CCDC28A-201ENST00000332797 H1F0P07305 194 aaKnown RBP14.08□□□□□ -0.16
CCDC28A-201ENST00000332797 ZNF43P17038 809 aa14.08□□□□□ -0.16
CCDC28A-201ENST00000332797 NTF4P34130 210 aa14.08□□□□□ -0.16
CCDC28A-201ENST00000332797 SORDQ00796 357 aa14.08□□□□□ -0.16
CCDC28A-201ENST00000332797 TRAP1Q12931 704 aaKnown RBP14.08□□□□□ -0.16
CCDC28A-201ENST00000332797 C1DQ13901 141 aaKnown RBP14.08□□□□□ -0.16
CCDC28A-201ENST00000332797 POU4F3Q15319 338 aa14.08□□□□□ -0.16
CCDC28A-201ENST00000332797 FGD3Q5JSP0 725 aa14.08□□□□□ -0.16
CCDC28A-201ENST00000332797 PGM2L1Q6PCE3 622 aa14.08□□□□□ -0.16
CCDC28A-201ENST00000332797 CREB3L2Q70SY1 520 aa14.08□□□□□ -0.16
CCDC28A-201ENST00000332797 SLC46A3Q7Z3Q1 461 aa14.08□□□□□ -0.16
CCDC28A-201ENST00000332797 LRRC17Q8N6Y2 441 aa14.08□□□□□ -0.16
CCDC28A-201ENST00000332797 ZIC4Q8N9L1 334 aa14.08□□□□□ -0.16
CCDC28A-201ENST00000332797 PIK3C3Q8NEB9 887 aa14.08□□□□□ -0.16
CCDC28A-201ENST00000332797 OR5J2Q8NH18 312 aa14.08□□□□□ -0.16
CCDC28A-201ENST00000332797 TMEM45BQ96B21 275 aa14.08□□□□□ -0.16
CCDC28A-201ENST00000332797 SGTBQ96EQ0 304 aa14.08□□□□□ -0.16
CCDC28A-201ENST00000332797 OXGR1Q96P68 337 aa14.08□□□□□ -0.16
CCDC28A-201ENST00000332797 PIP5K1AQ99755 562 aa14.08□□□□□ -0.16
CCDC28A-201ENST00000332797 FANCFQ9NPI8 374 aa14.08□□□□□ -0.16
CCDC28A-201ENST00000332797 B3GAT1Q9P2W7 334 aa14.08□□□□□ -0.16
CCDC28A-201ENST00000332797 ZNF229Q9UJW7 825 aa14.08□□□□□ -0.16
CCDC28A-201ENST00000332797 TESMINQ9Y4I5 508 aa14.08□□□□□ -0.16
CCDC28A-201ENST00000332797 CRYBG3Q68DQ2 2970 aa14.07□□□□□ -0.16
CCDC28A-201ENST00000332797 ACOT8O14734 319 aa14.07□□□□□ -0.16
CCDC28A-201ENST00000332797 HNRNPRO43390 633 aaKnown RBP14.07□□□□□ -0.16
CCDC28A-201ENST00000332797 OR6A2O95222 327 aa14.07□□□□□ -0.16
CCDC28A-201ENST00000332797 HPRP00739 348 aa14.07□□□□□ -0.16
CCDC28A-201ENST00000332797 IGHV3-9P01782 118 aa14.07□□□□□ -0.16
CCDC28A-201ENST00000332797 HIST1H2ABP04908 130 aa14.07□□□□□ -0.16
CCDC28A-201ENST00000332797 PEX19P40855 299 aa14.07□□□□□ -0.16
CCDC28A-201ENST00000332797 KIR2DL3P43628 341 aa14.07□□□□□ -0.16
CCDC28A-201ENST00000332797 LSM11P83369 360 aaKnown RBP eCLIP14.07□□□□□ -0.16
CCDC28A-201ENST00000332797 SPIBQ01892 262 aa14.07□□□□□ -0.16
CCDC28A-201ENST00000332797 PUDPQ08623 228 aa14.07□□□□□ -0.16
CCDC28A-201ENST00000332797 IQCCQ4KMZ1 466 aa14.07□□□□□ -0.16
CCDC28A-201ENST00000332797 ZNF730Q6ZMV8 503 aa14.07□□□□□ -0.16
CCDC28A-201ENST00000332797 CCDC121Q6ZUS5 278 aa14.07□□□□□ -0.16
CCDC28A-201ENST00000332797 HIST3H2AQ7L7L0 130 aa14.07□□□□□ -0.16
CCDC28A-201ENST00000332797 AAED1Q7RTV5 226 aa14.07□□□□□ -0.16
CCDC28A-201ENST00000332797 NANOGNBQ7Z5D8 188 aa14.07□□□□□ -0.16
CCDC28A-201ENST00000332797 EPHX4Q8IUS5 362 aa14.07□□□□□ -0.16
CCDC28A-201ENST00000332797 ZDHHC21Q8IVQ6 265 aa14.07□□□□□ -0.16
CCDC28A-201ENST00000332797 NRMQ8IXM6 262 aa14.07□□□□□ -0.16
CCDC28A-201ENST00000332797 UBE2J2Q8N2K1 259 aa14.07□□□□□ -0.16
CCDC28A-201ENST00000332797 ACOT11Q8WXI4 607 aaPredicted RBP14.07□□□□□ -0.16
CCDC28A-201ENST00000332797 HIST1H2ACQ93077 130 aa14.07□□□□□ -0.16
CCDC28A-201ENST00000332797 MARVELD3Q96A59 401 aa14.07□□□□□ -0.16
CCDC28A-201ENST00000332797 ANKRD19PQ9H560 264 aa14.07□□□□□ -0.16
CCDC28A-201ENST00000332797 IL1RAPQ9NPH3 570 aa14.07□□□□□ -0.16
CCDC28A-201ENST00000332797 PARPBPQ9NWS1 579 aa14.07□□□□□ -0.16
CCDC28A-201ENST00000332797 NBPF19A0A087WUL8 3843 aa14.07□□□□□ -0.16
CCDC28A-201ENST00000332797 A0A087WUU8 490 aa14.06□□□□□ -0.16
CCDC28A-201ENST00000332797 TUBAL3A6NHL2 446 aa14.06□□□□□ -0.16
CCDC28A-201ENST00000332797 MS4A18H0YCH9 400 aa14.06□□□□□ -0.16
CCDC28A-201ENST00000332797 C16orf97H3BN30 126 aa14.06□□□□□ -0.16
CCDC28A-201ENST00000332797 PLPP3O14495 311 aa14.06□□□□□ -0.16
CCDC28A-201ENST00000332797 SERPINI2O75830 405 aa14.06□□□□□ -0.16
CCDC28A-201ENST00000332797 OR7A10O76100 309 aa14.06□□□□□ -0.16
CCDC28A-201ENST00000332797 IGF2P01344 180 aa14.06□□□□□ -0.16
CCDC28A-201ENST00000332797 ADORA3P0DMS8 318 aa14.06□□□□□ -0.16
CCDC28A-201ENST00000332797 IFI30P13284 250 aa14.06□□□□□ -0.16
CCDC28A-201ENST00000332797 AHCYP23526 432 aa14.06□□□□□ -0.16
CCDC28A-201ENST00000332797 CCKARP32238 428 aa14.06□□□□□ -0.16
CCDC28A-201ENST00000332797 UGT2B10P36537 528 aa14.06□□□□□ -0.16
CCDC28A-201ENST00000332797 CLDN17P56750 224 aa14.06□□□□□ -0.16
CCDC28A-201ENST00000332797 POU3F1Q03052 451 aaPredicted RBP14.06□□□□□ -0.16
CCDC28A-201ENST00000332797 FLOT2Q14254 428 aa14.06□□□□□ -0.16
CCDC28A-201ENST00000332797 MS4A18Q3C1V0 323 aa14.06□□□□□ -0.16
CCDC28A-201ENST00000332797 TBPL2Q6SJ96 375 aa14.06□□□□□ -0.16
CCDC28A-201ENST00000332797 Q6ZT83 130 aa14.06□□□□□ -0.16
CCDC28A-201ENST00000332797 CXorf67Q86X51 503 aaPredicted RBP14.06□□□□□ -0.16
CCDC28A-201ENST00000332797 MEX3DQ86XN8 651 aaKnown RBP14.06□□□□□ -0.16
CCDC28A-201ENST00000332797 UEVLDQ8IX04 471 aa14.06□□□□□ -0.16
CCDC28A-201ENST00000332797 GABRG1Q8N1C3 465 aa14.06□□□□□ -0.16
CCDC28A-201ENST00000332797 OR52J3Q8NH60 311 aa14.06□□□□□ -0.16
CCDC28A-201ENST00000332797 LINC01560Q8TB33 94 aa14.06□□□□□ -0.16
CCDC28A-201ENST00000332797 LRMDAQ9H2I8 198 aa14.06□□□□□ -0.16
CCDC28A-201ENST00000332797 CRIM1Q9NZV1 1036 aa14.06□□□□□ -0.16
CCDC28A-201ENST00000332797 SETXQ7Z333 2677 aaKnown RBP14.06□□□□□ -0.16
CCDC28A-201ENST00000332797 A0A1W2PRQ8 180 aa14.06□□□□□ -0.16
CCDC28A-201ENST00000332797 C11orf98E9PRG8 122 aa14.06□□□□□ -0.16
CCDC28A-201ENST00000332797 ADAP00813 363 aa14.06□□□□□ -0.16
CCDC28A-201ENST00000332797 ASAH2BP0C7U1 165 aa14.06□□□□□ -0.16
CCDC28A-201ENST00000332797 HLA-DOBP13765 273 aa14.06□□□□□ -0.16
CCDC28A-201ENST00000332797 FUT1P19526 365 aa14.06□□□□□ -0.16
CCDC28A-201ENST00000332797 SELENOPP49908 381 aa14.06□□□□□ -0.16
CCDC28A-201ENST00000332797 DGCR6Q14129 220 aa14.06□□□□□ -0.16
CCDC28A-201ENST00000332797 FAM98BQ52LJ0 330 aaKnown RBP14.06□□□□□ -0.16
CCDC28A-201ENST00000332797 FBXW9Q5XUX1 488 aa14.06□□□□□ -0.16
CCDC28A-201ENST00000332797 NIPAL3Q6P499 406 aa14.06□□□□□ -0.16
CCDC28A-201ENST00000332797 PODNL1Q6PEZ8 512 aa14.06□□□□□ -0.16
CCDC28A-201ENST00000332797 STAC2Q6ZMT1 411 aa14.06□□□□□ -0.16
CCDC28A-201ENST00000332797 MBOAT2Q6ZWT7 520 aa14.06□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 36.3 ms