RNA–Protein interactions for RNA: ENST00000326004.4

HMGB1-201, Transcript of high mobility group box 1, humanhuman

TSL 3 BASIC

Gene HMGB1, Length 821 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-201ENST00000326004 LRATO95237 230 aa2.33□□□□□ -2.04
HMGB1-201ENST00000326004 GNA14O95837 355 aa2.33□□□□□ -2.04
HMGB1-201ENST00000326004 ACTL6AO96019 429 aa2.33□□□□□ -2.04
HMGB1-201ENST00000326004 CA1P00915 261 aaPredicted RBP2.33□□□□□ -2.04
HMGB1-201ENST00000326004 IGLV1-47P01700 117 aa2.33□□□□□ -2.04
HMGB1-201ENST00000326004 IGHV3-48P01763 117 aa2.33□□□□□ -2.04
HMGB1-201ENST00000326004 UQCRFS1P1P0C7P4 283 aa2.33□□□□□ -2.04
HMGB1-201ENST00000326004 ZNF735P0CB33 412 aa2.33□□□□□ -2.04
HMGB1-201ENST00000326004 GZMAP12544 262 aa2.33□□□□□ -2.04
HMGB1-201ENST00000326004 ELK1P19419 428 aa2.33□□□□□ -2.04
HMGB1-201ENST00000326004 PCMT1P22061 227 aa2.33□□□□□ -2.04
HMGB1-201ENST00000326004 CCR1P32246 355 aa2.33□□□□□ -2.04
HMGB1-201ENST00000326004 GRIA1P42261 906 aa2.33□□□□□ -2.04
HMGB1-201ENST00000326004 CEBPDP49716 269 aaPredicted RBP2.33□□□□□ -2.04
HMGB1-201ENST00000326004 PRKXP51817 358 aa2.33□□□□□ -2.04
HMGB1-201ENST00000326004 ATP5IP56385 69 aaPredicted RBP2.33□□□□□ -2.04
HMGB1-201ENST00000326004 CCDC173Q0VFZ6 552 aa2.33□□□□□ -2.04
HMGB1-201ENST00000326004 CCDC14Q49A88 953 aa2.33□□□□□ -2.04
HMGB1-201ENST00000326004 PHYHD1Q5SRE7 291 aa2.33□□□□□ -2.04
HMGB1-201ENST00000326004 METAP1DQ6UB28 335 aaPredicted RBP2.33□□□□□ -2.04
HMGB1-201ENST00000326004 CCDC73Q6ZRK6 1079 aa2.33□□□□□ -2.04
HMGB1-201ENST00000326004 ARCQ7LC44 396 aa2.33□□□□□ -2.04
HMGB1-201ENST00000326004 MOB3BQ86TA1 216 aa2.33□□□□□ -2.04
HMGB1-201ENST00000326004 ERI1Q8IV48 349 aaKnown RBP2.33□□□□□ -2.04
HMGB1-201ENST00000326004 LRRC75A-AS1Q8N1F1 130 aa2.33□□□□□ -2.04
HMGB1-201ENST00000326004 BBS5Q8N3I7 341 aa2.33□□□□□ -2.04
HMGB1-201ENST00000326004 ALLCQ8N6M5 410 aa2.33□□□□□ -2.04
HMGB1-201ENST00000326004 Q8N7P7 452 aa2.33□□□□□ -2.04
HMGB1-201ENST00000326004 OR2AP1Q8NGE2 309 aa2.33□□□□□ -2.04
HMGB1-201ENST00000326004 OR51G2Q8NGK0 314 aa2.33□□□□□ -2.04
HMGB1-201ENST00000326004 OR5L2Q8NGL0 311 aa2.33□□□□□ -2.04
HMGB1-201ENST00000326004 OR5D13Q8NGL4 314 aa2.33□□□□□ -2.04
HMGB1-201ENST00000326004 MARC2Q969Z3 335 aa2.33□□□□□ -2.04
HMGB1-201ENST00000326004 NPY6RQ99463 290 aa2.33□□□□□ -2.04
HMGB1-201ENST00000326004 NPAS2Q99743 824 aa2.33□□□□□ -2.04
HMGB1-201ENST00000326004 NIPSNAP3BQ9BS92 247 aa2.33□□□□□ -2.04
HMGB1-201ENST00000326004 NXF5Q9H1B4 397 aaKnown RBP2.33□□□□□ -2.04
HMGB1-201ENST00000326004 GLIPR2Q9H4G4 154 aa2.33□□□□□ -2.04
HMGB1-201ENST00000326004 RAB18Q9NP72 206 aa2.33□□□□□ -2.04
HMGB1-201ENST00000326004 ETNK2Q9NVF9 386 aa2.33□□□□□ -2.04
HMGB1-201ENST00000326004 DDX18Q9NVP1 670 aaKnown RBP2.33□□□□□ -2.04
HMGB1-201ENST00000326004 NYAP2Q9P242 653 aa2.33□□□□□ -2.04
HMGB1-201ENST00000326004 UBQLN1Q9UMX0 589 aaKnown RBP2.33□□□□□ -2.04
HMGB1-201ENST00000326004 RPH3ALQ9UNE2 315 aa2.33□□□□□ -2.04
HMGB1-201ENST00000326004 SLCO1B1Q9Y6L6 691 aa2.33□□□□□ -2.04
HMGB1-201ENST00000326004 CCNB3Q8WWL7 1395 aa2.33□□□□□ -2.04
HMGB1-201ENST00000326004 EIF2AK4Q9P2K8 1649 aaKnown RBP2.32□□□□□ -2.04
HMGB1-201ENST00000326004 KIF1AQ12756 1690 aa2.32□□□□□ -2.04
HMGB1-201ENST00000326004 TRAV26-1A0A087WT03 109 aa2.32□□□□□ -2.04
HMGB1-201ENST00000326004 A0A0U1RQS6 177 aa2.32□□□□□ -2.04
HMGB1-201ENST00000326004 GOLGA8OA6NCC3 632 aa2.32□□□□□ -2.04
HMGB1-201ENST00000326004 KRTAP9-6A8MVA2 160 aa2.32□□□□□ -2.04
HMGB1-201ENST00000326004 GOLGA8NF8WBI6 632 aa2.32□□□□□ -2.04
HMGB1-201ENST00000326004 CASQ2O14958 399 aaPredicted RBP2.32□□□□□ -2.04
HMGB1-201ENST00000326004 TAPBPO15533 448 aa2.32□□□□□ -2.04
HMGB1-201ENST00000326004 ZNF264O43296 627 aa2.32□□□□□ -2.04
HMGB1-201ENST00000326004 FCMRO60667 390 aa2.32□□□□□ -2.04
HMGB1-201ENST00000326004 N4BP1O75113 896 aaKnown RBP2.32□□□□□ -2.04
HMGB1-201ENST00000326004 CIB2O75838 187 aa2.32□□□□□ -2.04
HMGB1-201ENST00000326004 SLITRK3O94933 977 aa2.32□□□□□ -2.04
HMGB1-201ENST00000326004 TIMP1P01033 207 aa2.32□□□□□ -2.04
HMGB1-201ENST00000326004 ASGR1P07306 291 aa2.32□□□□□ -2.04
HMGB1-201ENST00000326004 CD1EP15812 388 aa2.32□□□□□ -2.04
HMGB1-201ENST00000326004 DRD3P35462 400 aa2.32□□□□□ -2.04
HMGB1-201ENST00000326004 PRRX1P54821 245 aa2.32□□□□□ -2.04
HMGB1-201ENST00000326004 RPL23AP62750 156 aaKnown RBP2.32□□□□□ -2.04
HMGB1-201ENST00000326004 PLD1Q13393 1074 aa2.32□□□□□ -2.04
HMGB1-201ENST00000326004 GGTA1PQ4G0N0 100 aa2.32□□□□□ -2.04
HMGB1-201ENST00000326004 HSP90AB3PQ58FF7 597 aa2.32□□□□□ -2.04
HMGB1-201ENST00000326004 TMEM31Q5JXX7 168 aa2.32□□□□□ -2.04
HMGB1-201ENST00000326004 C10orf120Q5SQS8 335 aa2.32□□□□□ -2.04
HMGB1-201ENST00000326004 TMEM225Q6GV28 225 aa2.32□□□□□ -2.04
HMGB1-201ENST00000326004 ZSCAN25Q6NSZ9 544 aa2.32□□□□□ -2.04
HMGB1-201ENST00000326004 CCDC137Q6PK04 289 aaKnown RBP2.32□□□□□ -2.04
HMGB1-201ENST00000326004 NANOGNBQ7Z5D8 188 aa2.32□□□□□ -2.04
HMGB1-201ENST00000326004 NBPF5PQ86XG9 351 aaPredicted RBP2.32□□□□□ -2.04
HMGB1-201ENST00000326004 TGIF2LYQ8IUE0 185 aa2.32□□□□□ -2.04
HMGB1-201ENST00000326004 SLC38A6Q8IZM9 456 aa2.32□□□□□ -2.04
HMGB1-201ENST00000326004 TTC5Q8N0Z6 440 aa2.32□□□□□ -2.04
HMGB1-201ENST00000326004 TMEM123Q8N131 208 aa2.32□□□□□ -2.04
HMGB1-201ENST00000326004 TMEM252Q8N6L7 170 aa2.32□□□□□ -2.04
HMGB1-201ENST00000326004 KIR3DL3Q8N743 410 aa2.32□□□□□ -2.04
HMGB1-201ENST00000326004 PAQR8Q8TEZ7 354 aa2.32□□□□□ -2.04
HMGB1-201ENST00000326004 DNAJA4Q8WW22 397 aaPredicted RBP2.32□□□□□ -2.04
HMGB1-201ENST00000326004 OR1E3Q8WZA6 343 aa2.32□□□□□ -2.04
HMGB1-201ENST00000326004 PIGCQ92535 297 aa2.32□□□□□ -2.04
HMGB1-201ENST00000326004 NUS1Q96E22 293 aa2.32□□□□□ -2.04
HMGB1-201ENST00000326004 COQ2Q96H96 371 aa2.32□□□□□ -2.04
HMGB1-201ENST00000326004 PLIN2Q99541 437 aa2.32□□□□□ -2.04
HMGB1-201ENST00000326004 EBF4Q9BQW3 602 aa2.32□□□□□ -2.04
HMGB1-201ENST00000326004 RNF126Q9BV68 326 aa2.32□□□□□ -2.04
HMGB1-201ENST00000326004 RHBGQ9H310 441 aa2.32□□□□□ -2.04
HMGB1-201ENST00000326004 SH2D2AQ9NP31 389 aa2.32□□□□□ -2.04
HMGB1-201ENST00000326004 GLRX2Q9NS18 164 aa2.32□□□□□ -2.04
HMGB1-201ENST00000326004 LCMT1Q9UIC8 334 aa2.32□□□□□ -2.04
HMGB1-201ENST00000326004 IFT52Q9Y366 437 aa2.32□□□□□ -2.04
HMGB1-201ENST00000326004 WDR19Q8NEZ3 1342 aa2.32□□□□□ -2.04
HMGB1-201ENST00000326004 CENPJQ9HC77 1338 aaPredicted RBP2.32□□□□□ -2.04
HMGB1-201ENST00000326004 TRPM1Q7Z4N2 1603 aa2.31□□□□□ -2.04
HMGB1-201ENST00000326004 GCC2Q8IWJ2 1684 aa2.31□□□□□ -2.04
Retrieved 100 of 20,778 RNA–protein pairs in 91.2 ms