RNA–Protein interactions for RNA: ENST00000311487.9

HMGA1-201, Transcript of high mobility group AT-hook 1, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene HMGA1, Length 1,920 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1-201ENST00000311487 BCKDKO14874 412 aa16.24■□□□□ 0.19
HMGA1-201ENST00000311487 IGFBP1P08833 259 aaPredicted RBP16.24■□□□□ 0.19
HMGA1-201ENST00000311487 AHCYP23526 432 aa16.24■□□□□ 0.19
HMGA1-201ENST00000311487 PRKCDQ05655 676 aa16.24■□□□□ 0.19
HMGA1-201ENST00000311487 BCL2A1Q16548 175 aa16.24■□□□□ 0.19
HMGA1-201ENST00000311487 GCNT2Q8N0V5 402 aa16.24■□□□□ 0.19
HMGA1-201ENST00000311487 PIGXQ8TBF5 258 aa16.24■□□□□ 0.19
HMGA1-201ENST00000311487 GIPC3Q8TF64 312 aa16.24■□□□□ 0.19
HMGA1-201ENST00000311487 ANKRD19PQ9H560 264 aa16.24■□□□□ 0.19
HMGA1-201ENST00000311487 FAM118AQ9NWS6 357 aa16.24■□□□□ 0.19
HMGA1-201ENST00000311487 TMEFF2Q9UIK5 374 aaPredicted RBP16.24■□□□□ 0.19
HMGA1-201ENST00000311487 FAM215AQ9Y5M1 114 aa16.24■□□□□ 0.19
HMGA1-201ENST00000311487 TRIM64A6NGJ6 449 aa16.23■□□□□ 0.19
HMGA1-201ENST00000311487 SMAD9O15198 467 aaKnown RBP16.23■□□□□ 0.19
HMGA1-201ENST00000311487 PAX7P23759 505 aa16.23■□□□□ 0.19
HMGA1-201ENST00000311487 GTF2E2P29084 291 aaKnown RBP16.23■□□□□ 0.19
HMGA1-201ENST00000311487 NR1H2P55055 460 aa16.23■□□□□ 0.19
HMGA1-201ENST00000311487 CDH15P55291 814 aa16.23■□□□□ 0.19
HMGA1-201ENST00000311487 RAC3P60763 192 aa16.23■□□□□ 0.19
HMGA1-201ENST00000311487 RPS3AP61247 264 aaKnown RBP16.23■□□□□ 0.19
HMGA1-201ENST00000311487 ESPL1Q14674 2120 aa16.23■□□□□ 0.19
HMGA1-201ENST00000311487 ZNF239Q16600 458 aaKnown RBP16.23■□□□□ 0.19
HMGA1-201ENST00000311487 ACSF3Q4G176 576 aaPredicted RBP16.23■□□□□ 0.19
HMGA1-201ENST00000311487 ZNF770Q6IQ21 691 aaPredicted RBP16.23■□□□□ 0.19
HMGA1-201ENST00000311487 MYO7BQ6PIF6 2116 aa16.23■□□□□ 0.19
HMGA1-201ENST00000311487 IGFN1Q86VF2 1251 aa16.23■□□□□ 0.19
HMGA1-201ENST00000311487 PM20D2Q8IYS1 436 aa16.23■□□□□ 0.19
HMGA1-201ENST00000311487 MUS81Q96NY9 551 aa16.23■□□□□ 0.19
HMGA1-201ENST00000311487 ZNF835Q9Y2P0 537 aa16.23■□□□□ 0.19
HMGA1-201ENST00000311487 ALPK2Q86TB3 2170 aa16.23■□□□□ 0.19
HMGA1-201ENST00000311487 PCNX1Q96RV3 2341 aa16.23■□□□□ 0.19
HMGA1-201ENST00000311487 EFCAB9A8MZ26 197 aa16.23■□□□□ 0.19
HMGA1-201ENST00000311487 OR7A10O76100 309 aa16.23■□□□□ 0.19
HMGA1-201ENST00000311487 PMS2P2O95744 297 aa16.23■□□□□ 0.19
HMGA1-201ENST00000311487 PLGP00747 810 aaPredicted RBP16.23■□□□□ 0.19
HMGA1-201ENST00000311487 HLA-DOBP13765 273 aa16.23■□□□□ 0.19
HMGA1-201ENST00000311487 ACVR2AP27037 513 aa16.23■□□□□ 0.19
HMGA1-201ENST00000311487 MAP2K6P52564 334 aa16.23■□□□□ 0.19
HMGA1-201ENST00000311487 CSNK2A1P68400 391 aaPredicted RBP16.23■□□□□ 0.19
HMGA1-201ENST00000311487 RBPJQ06330 500 aa16.23■□□□□ 0.19
HMGA1-201ENST00000311487 SEM1Q6ZVN7 128 aa16.23■□□□□ 0.19
HMGA1-201ENST00000311487 ZC3HAV1Q7Z2W4 902 aaKnown RBP16.23■□□□□ 0.19
HMGA1-201ENST00000311487 GALNT5Q7Z7M9 940 aa16.23■□□□□ 0.19
HMGA1-201ENST00000311487 MFSD8Q8NHS3 518 aa16.23■□□□□ 0.19
HMGA1-201ENST00000311487 TNFRSF13CQ96RJ3 184 aa16.23■□□□□ 0.19
HMGA1-201ENST00000311487 ENKD1Q9H0I2 346 aa16.23■□□□□ 0.19
HMGA1-201ENST00000311487 NDUFA13Q9P0J0 144 aa16.23■□□□□ 0.19
HMGA1-201ENST00000311487 COL12A1Q99715 3063 aa16.23■□□□□ 0.19
HMGA1-201ENST00000311487 SLC22A20A6NK97 555 aa16.22■□□□□ 0.19
HMGA1-201ENST00000311487 TRIM64CA6NLI5 447 aa16.22■□□□□ 0.19
HMGA1-201ENST00000311487 SOX14O95416 240 aa16.22■□□□□ 0.19
HMGA1-201ENST00000311487 F13BP05160 661 aa16.22■□□□□ 0.19
HMGA1-201ENST00000311487 AQP2P41181 271 aa16.22■□□□□ 0.19
HMGA1-201ENST00000311487 CLK1P49759 484 aaKnown RBP16.22■□□□□ 0.19
HMGA1-201ENST00000311487 TUBA4AP68366 448 aa16.22■□□□□ 0.19
HMGA1-201ENST00000311487 SLC35A1P78382 337 aa16.22■□□□□ 0.19
HMGA1-201ENST00000311487 PMPCAQ10713 525 aa16.22■□□□□ 0.19
HMGA1-201ENST00000311487 PMS2P3Q13401 168 aa16.22■□□□□ 0.19
HMGA1-201ENST00000311487 PDSS1Q5T2R2 415 aa16.22■□□□□ 0.19
HMGA1-201ENST00000311487 TTC23Q5W5X9 447 aa16.22■□□□□ 0.19
HMGA1-201ENST00000311487 FCRLAQ7L513 359 aa16.22■□□□□ 0.19
HMGA1-201ENST00000311487 P4HA3Q7Z4N8 544 aa16.22■□□□□ 0.19
HMGA1-201ENST00000311487 OAFQ86UD1 273 aa16.22■□□□□ 0.19
HMGA1-201ENST00000311487 FJX1Q86VR8 437 aa16.22■□□□□ 0.19
HMGA1-201ENST00000311487 CDK20Q8IZL9 346 aa16.22■□□□□ 0.19
HMGA1-201ENST00000311487 RNF113BQ8IZP6 322 aaKnown RBP16.22■□□□□ 0.19
HMGA1-201ENST00000311487 ATG16L2Q8NAA4 619 aa16.22■□□□□ 0.19
HMGA1-201ENST00000311487 C9orf106Q8NAJ2 232 aa16.22■□□□□ 0.19
HMGA1-201ENST00000311487 MOSPD2Q8NHP6 518 aa16.22■□□□□ 0.19
HMGA1-201ENST00000311487 SLC19A3Q9BZV2 496 aa16.22■□□□□ 0.19
HMGA1-201ENST00000311487 TRAPPC4Q9Y296 219 aa16.22■□□□□ 0.19
HMGA1-201ENST00000311487 OR2T1O43869 369 aa16.21■□□□□ 0.19
HMGA1-201ENST00000311487 MITFO75030 526 aaPredicted RBP16.21■□□□□ 0.19
HMGA1-201ENST00000311487 SYNGR4O95473 234 aa16.21■□□□□ 0.19
HMGA1-201ENST00000311487 ADORA3P0DMS8 318 aa16.21■□□□□ 0.19
HMGA1-201ENST00000311487 ARHGDIAP52565 204 aa16.21■□□□□ 0.19
HMGA1-201ENST00000311487 CTBP2P56545 445 aa16.21■□□□□ 0.19
HMGA1-201ENST00000311487 CNPY1Q3B7I2 92 aa16.21■□□□□ 0.19
HMGA1-201ENST00000311487 TMEM225Q6GV28 225 aa16.21■□□□□ 0.19
HMGA1-201ENST00000311487 ZNF555Q8NEP9 628 aa16.21■□□□□ 0.19
HMGA1-201ENST00000311487 INTS12Q96CB8 462 aaKnown RBP16.21■□□□□ 0.19
HMGA1-201ENST00000311487 EGLN3Q9H6Z9 239 aa16.21■□□□□ 0.19
HMGA1-201ENST00000311487 TIGARQ9NQ88 270 aa16.21■□□□□ 0.19
HMGA1-201ENST00000311487 MCTS1Q9ULC4 181 aaKnown RBP16.21■□□□□ 0.19
HMGA1-201ENST00000311487 FIGNL2A6NMB9 653 aa16.21■□□□□ 0.19
HMGA1-201ENST00000311487 AHRRA9YTQ3 701 aa16.21■□□□□ 0.19
HMGA1-201ENST00000311487 TOXO94900 526 aa16.21■□□□□ 0.19
HMGA1-201ENST00000311487 HIST1H2ABP04908 130 aa16.21■□□□□ 0.19
HMGA1-201ENST00000311487 ASAH2BP0C7U1 165 aa16.21■□□□□ 0.19
HMGA1-201ENST00000311487 FKBP2P26885 142 aaKnown RBP16.21■□□□□ 0.19
HMGA1-201ENST00000311487 ALDH3B2P48448 385 aa16.21■□□□□ 0.19
HMGA1-201ENST00000311487 DAPP51397 102 aa16.21■□□□□ 0.19
HMGA1-201ENST00000311487 RFX4Q33E94 735 aa16.21■□□□□ 0.19
HMGA1-201ENST00000311487 HIST3H2AQ7L7L0 130 aa16.21■□□□□ 0.19
HMGA1-201ENST00000311487 MAMDC2Q7Z304 686 aaPredicted RBP16.21■□□□□ 0.19
HMGA1-201ENST00000311487 ZPLD1Q8TCW7 415 aa16.21■□□□□ 0.19
HMGA1-201ENST00000311487 HIST1H2ACQ93077 130 aa16.21■□□□□ 0.19
HMGA1-201ENST00000311487 CPNE4Q96A23 557 aaPredicted RBP16.21■□□□□ 0.19
HMGA1-201ENST00000311487 NRBF2Q96F24 287 aa16.21■□□□□ 0.19
HMGA1-201ENST00000311487 ASPNQ9BXN1 380 aa16.21■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 33.4 ms