RNA–Protein interactions for RNA: ENST00000308508.5

CSPG4-201, Transcript of chondroitin sulfate proteoglycan 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CSPG4, Length 8,290 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSPG4-201ENST00000308508 FAM57BQ71RH2 274 aa12.93□□□□□ -0.34
CSPG4-201ENST00000308508 ACVR1CQ8NER5 493 aa12.93□□□□□ -0.34
CSPG4-201ENST00000308508 BOCQ9BWV1 1114 aa12.93□□□□□ -0.34
CSPG4-201ENST00000308508 FTSJ1Q9UET6 329 aa12.93□□□□□ -0.34
CSPG4-201ENST00000308508 PSORS1C1Q9UIG5 152 aa12.93□□□□□ -0.34
CSPG4-201ENST00000308508 EIF4EP06730 217 aaKnown RBP12.93□□□□□ -0.34
CSPG4-201ENST00000308508 BMP1P13497 986 aa12.93□□□□□ -0.34
CSPG4-201ENST00000308508 KIAA1024LP59773 190 aa12.93□□□□□ -0.34
CSPG4-201ENST00000308508 SIRPAP78324 504 aa12.93□□□□□ -0.34
CSPG4-201ENST00000308508 KCTD11Q693B1 232 aa12.93□□□□□ -0.34
CSPG4-201ENST00000308508 LYSMD2Q8IV50 215 aa12.93□□□□□ -0.34
CSPG4-201ENST00000308508 PCNPQ8WW12 178 aaKnown RBP12.93□□□□□ -0.34
CSPG4-201ENST00000308508 GINS3Q9BRX5 216 aa12.93□□□□□ -0.34
CSPG4-201ENST00000308508 ZCWPW2A0A1B0GU75 182 aa12.92□□□□□ -0.34
CSPG4-201ENST00000308508 IDUAP35475 653 aa12.92□□□□□ -0.34
CSPG4-201ENST00000308508 GSK3AP49840 483 aa12.92□□□□□ -0.34
CSPG4-201ENST00000308508 RAB33AQ14088 237 aa12.92□□□□□ -0.34
CSPG4-201ENST00000308508 SIX1Q15475 284 aaPredicted RBP12.92□□□□□ -0.34
CSPG4-201ENST00000308508 NKAIN3Q8N8D7 197 aa12.92□□□□□ -0.34
CSPG4-201ENST00000308508 C2CD4CQ8TF44 421 aa12.92□□□□□ -0.34
CSPG4-201ENST00000308508 C20orf24Q9BUV8 137 aa12.92□□□□□ -0.34
CSPG4-201ENST00000308508 C1orf198Q9H425 327 aa12.92□□□□□ -0.34
CSPG4-201ENST00000308508 NOX4Q9NPH5 578 aa12.92□□□□□ -0.34
CSPG4-201ENST00000308508 OBP2BQ9NPH6 170 aa12.92□□□□□ -0.34
CSPG4-201ENST00000308508 SLC9B1P1A6NJY1 282 aa12.92□□□□□ -0.34
CSPG4-201ENST00000308508 GJB5O95377 273 aa12.92□□□□□ -0.34
CSPG4-201ENST00000308508 DTYMKP23919 212 aa12.92□□□□□ -0.34
CSPG4-201ENST00000308508 MED16Q9Y2X0 877 aa12.92□□□□□ -0.34
CSPG4-201ENST00000308508 PHF1O43189 567 aaPredicted RBP12.92□□□□□ -0.34
CSPG4-201ENST00000308508 OR7C1O76099 320 aaPredicted RBP12.92□□□□□ -0.34
CSPG4-201ENST00000308508 SLC1A3P43003 542 aa12.92□□□□□ -0.34
CSPG4-201ENST00000308508 ENTPD2Q9Y5L3 495 aa12.92□□□□□ -0.34
CSPG4-201ENST00000308508 TAAR5O14804 337 aa12.92□□□□□ -0.34
CSPG4-201ENST00000308508 C1QBP02746 253 aa12.92□□□□□ -0.34
CSPG4-201ENST00000308508 STK11Q15831 433 aa12.92□□□□□ -0.34
CSPG4-201ENST00000308508 OR2G6Q5TZ20 316 aa12.92□□□□□ -0.34
CSPG4-201ENST00000308508 ZNF836Q6ZNA1 936 aa12.92□□□□□ -0.34
CSPG4-201ENST00000308508 ACOT4Q8N9L9 421 aa12.92□□□□□ -0.34
CSPG4-201ENST00000308508 PHYHIPQ92561 330 aa12.92□□□□□ -0.34
CSPG4-201ENST00000308508 GMPR2Q9P2T1 348 aaKnown RBP12.92□□□□□ -0.34
CSPG4-201ENST00000308508 SHROOM3Q8TF72 1996 aa12.92□□□□□ -0.34
CSPG4-201ENST00000308508 RAB5AP20339 215 aa12.92□□□□□ -0.34
CSPG4-201ENST00000308508 RFX2P48378 723 aa12.92□□□□□ -0.34
CSPG4-201ENST00000308508 PDZD11Q5EBL8 140 aa12.92□□□□□ -0.34
CSPG4-201ENST00000308508 C12orf57Q99622 126 aa12.92□□□□□ -0.34
CSPG4-201ENST00000308508 OR51B6Q9H340 312 aa12.92□□□□□ -0.34
CSPG4-201ENST00000308508 GAR1Q9NY12 217 aaKnown RBP12.92□□□□□ -0.34
CSPG4-201ENST00000308508 OR6C68A6NDL8 312 aa12.92□□□□□ -0.34
CSPG4-201ENST00000308508 I6L893 689 aaPredicted RBP12.92□□□□□ -0.34
CSPG4-201ENST00000308508 LINC00299Q6ZSB3 139 aa12.92□□□□□ -0.34
CSPG4-201ENST00000308508 NPWQ8N729 165 aa12.92□□□□□ -0.34
CSPG4-201ENST00000308508 OR7D2Q96RA2 312 aa12.92□□□□□ -0.34
CSPG4-201ENST00000308508 VN1R3Q9BXE9 311 aa12.92□□□□□ -0.34
CSPG4-201ENST00000308508 NECAP2Q9NVZ3 263 aa12.92□□□□□ -0.34
CSPG4-201ENST00000308508 MRC1P22897 1456 aa12.92□□□□□ -0.34
CSPG4-201ENST00000308508 XRCC3O43542 346 aa12.91□□□□□ -0.34
CSPG4-201ENST00000308508 FCGR2AP12318 317 aa12.91□□□□□ -0.34
CSPG4-201ENST00000308508 Q499Y3 187 aa12.91□□□□□ -0.34
CSPG4-201ENST00000308508 OR2G3Q8NGZ4 309 aa12.91□□□□□ -0.34
CSPG4-201ENST00000308508 SLC35B4Q969S0 331 aa12.91□□□□□ -0.34
CSPG4-201ENST00000308508 NAA50Q9GZZ1 169 aaKnown RBP12.91□□□□□ -0.34
CSPG4-201ENST00000308508 SLC25A32Q9H2D1 315 aa12.91□□□□□ -0.34
CSPG4-201ENST00000308508 LOC100289279A0A1B0GTE1 492 aa12.91□□□□□ -0.34
CSPG4-201ENST00000308508 IAH1Q2TAA2 248 aaPredicted RBP12.91□□□□□ -0.34
CSPG4-201ENST00000308508 Q6ZTK2 550 aa12.91□□□□□ -0.34
CSPG4-201ENST00000308508 OR13C9Q8NGT0 318 aa12.91□□□□□ -0.34
CSPG4-201ENST00000308508 ZNRF4Q8WWF5 429 aa12.91□□□□□ -0.34
CSPG4-201ENST00000308508 ABHD6Q9BV23 337 aa12.91□□□□□ -0.34
CSPG4-201ENST00000308508 GSX2Q9BZM3 304 aa12.91□□□□□ -0.34
CSPG4-201ENST00000308508 CACNA1CQ13936 2221 aa12.91□□□□□ -0.34
CSPG4-201ENST00000308508 STC2O76061 302 aa12.91□□□□□ -0.34
CSPG4-201ENST00000308508 ACKR3P25106 362 aa12.91□□□□□ -0.34
CSPG4-201ENST00000308508 FCER1GP30273 86 aa12.91□□□□□ -0.34
CSPG4-201ENST00000308508 TM4SF1P30408 202 aa12.91□□□□□ -0.34
CSPG4-201ENST00000308508 EPHA4P54764 986 aa12.91□□□□□ -0.34
CSPG4-201ENST00000308508 RAB1AP62820 205 aa12.91□□□□□ -0.34
CSPG4-201ENST00000308508 SLC22A24Q8N4F4 322 aa12.91□□□□□ -0.34
CSPG4-201ENST00000308508 WDTC1Q8N5D0 677 aa12.91□□□□□ -0.34
CSPG4-201ENST00000308508 TM7SF3Q9NS93 570 aa12.91□□□□□ -0.34
CSPG4-201ENST00000308508 UMAD1C9J7I0 102 aa12.91□□□□□ -0.34
CSPG4-201ENST00000308508 PLSCR1O15162 318 aa12.91□□□□□ -0.34
CSPG4-201ENST00000308508 JTBO76095 146 aa12.91□□□□□ -0.34
CSPG4-201ENST00000308508 GABRA2P47869 451 aa12.91□□□□□ -0.34
CSPG4-201ENST00000308508 CNTN4Q8IWV2 1026 aa12.91□□□□□ -0.34
CSPG4-201ENST00000308508 KLHDC1Q8N7A1 406 aa12.91□□□□□ -0.34
CSPG4-201ENST00000308508 ABHD4Q8TB40 342 aa12.91□□□□□ -0.34
CSPG4-201ENST00000308508 NEIL2Q969S2 332 aa12.91□□□□□ -0.34
CSPG4-201ENST00000308508 PCDHB10Q9UN67 800 aa12.91□□□□□ -0.34
CSPG4-201ENST00000308508 V9GYS6 101 aa12.91□□□□□ -0.34
CSPG4-201ENST00000308508 SLC16A6O15403 523 aa12.91□□□□□ -0.34
CSPG4-201ENST00000308508 SPRED3Q2MJR0 410 aa12.91□□□□□ -0.34
CSPG4-201ENST00000308508 NPSR1Q6W5P4 371 aa12.91□□□□□ -0.34
CSPG4-201ENST00000308508 C19orf35Q6ZS72 473 aa12.91□□□□□ -0.34
CSPG4-201ENST00000308508 ZNF765Q7L2R6 523 aa12.91□□□□□ -0.34
CSPG4-201ENST00000308508 CATSPERDQ86XM0 798 aa12.91□□□□□ -0.34
CSPG4-201ENST00000308508 OR4C5Q8NGB2 326 aa12.91□□□□□ -0.34
CSPG4-201ENST00000308508 ST8SIA4Q92187 359 aa12.91□□□□□ -0.34
CSPG4-201ENST00000308508 AMDHD1Q96NU7 426 aa12.91□□□□□ -0.34
CSPG4-201ENST00000308508 SELENOIQ9C0D9 397 aa12.91□□□□□ -0.34
CSPG4-201ENST00000308508 OR5H15A6NDH6 313 aa12.91□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 49.1 ms