RNA–Protein interactions for RNA: ENST00000291074.9

VPS53-201, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 2,656 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-201ENST00000291074 FZD7O75084 574 aa18.27■□□□□ 0.52
VPS53-201ENST00000291074 CPNE3O75131 537 aaKnown RBP18.27■□□□□ 0.52
VPS53-201ENST00000291074 TRAPPC2P0DI81 140 aa18.27■□□□□ 0.52
VPS53-201ENST00000291074 TRAPPC2BP0DI82 140 aa18.27■□□□□ 0.52
VPS53-201ENST00000291074 FOLR1P15328 257 aa18.27■□□□□ 0.52
VPS53-201ENST00000291074 BCKDHBP21953 392 aa18.27■□□□□ 0.52
VPS53-201ENST00000291074 RBMS1P29558 406 aaKnown RBP18.27■□□□□ 0.52
VPS53-201ENST00000291074 CSF2RBP32927 897 aa18.27■□□□□ 0.52
VPS53-201ENST00000291074 PITPNBP48739 271 aa18.27■□□□□ 0.52
VPS53-201ENST00000291074 ZNF117Q03924 483 aa18.27■□□□□ 0.52
VPS53-201ENST00000291074 TOMM34Q15785 309 aaPredicted RBP18.27■□□□□ 0.52
VPS53-201ENST00000291074 CEP78Q5JTW2 689 aa18.27■□□□□ 0.52
VPS53-201ENST00000291074 ESPNLQ6ZVH7 1005 aa18.27■□□□□ 0.52
VPS53-201ENST00000291074 C1orf216Q8TAB5 229 aa18.27■□□□□ 0.52
VPS53-201ENST00000291074 RELTQ969Z4 430 aa18.27■□□□□ 0.52
VPS53-201ENST00000291074 ELF4Q99607 663 aaPredicted RBP18.27■□□□□ 0.52
VPS53-201ENST00000291074 UBE2ZQ9H832 354 aaPredicted RBP18.27■□□□□ 0.52
VPS53-201ENST00000291074 KLHDC2Q9Y2U9 406 aa18.27■□□□□ 0.52
VPS53-201ENST00000291074 NUP210LQ5VU65 1888 aa18.27■□□□□ 0.52
VPS53-201ENST00000291074 CACNA1CQ13936 2221 aa18.27■□□□□ 0.52
VPS53-201ENST00000291074 FRG2CA6NGY1 282 aa18.27■□□□□ 0.52
VPS53-201ENST00000291074 GLCEO94923 617 aa18.27■□□□□ 0.52
VPS53-201ENST00000291074 CD14P08571 375 aa18.27■□□□□ 0.52
VPS53-201ENST00000291074 CAPZA2P47755 286 aa18.27■□□□□ 0.52
VPS53-201ENST00000291074 HSD11B2P80365 405 aa18.27■□□□□ 0.52
VPS53-201ENST00000291074 GPR176Q14439 515 aa18.27■□□□□ 0.52
VPS53-201ENST00000291074 SLC35D3Q5M8T2 416 aa18.27■□□□□ 0.52
VPS53-201ENST00000291074 RPL22L1Q6P5R6 122 aaKnown RBP18.27■□□□□ 0.52
VPS53-201ENST00000291074 JAZF1Q86VZ6 243 aa18.27■□□□□ 0.52
VPS53-201ENST00000291074 C9orf40Q8IXQ3 194 aa18.27■□□□□ 0.52
VPS53-201ENST00000291074 TEX19Q8NA77 164 aa18.27■□□□□ 0.52
VPS53-201ENST00000291074 CADM4Q8NFZ8 388 aa18.27■□□□□ 0.52
VPS53-201ENST00000291074 HSD17B8Q92506 261 aa18.27■□□□□ 0.52
VPS53-201ENST00000291074 RFT1Q96AA3 541 aa18.27■□□□□ 0.52
VPS53-201ENST00000291074 TNRC18O15417 2968 aaPredicted RBP18.27■□□□□ 0.51
VPS53-201ENST00000291074 SERPINA3P01011 423 aa18.26■□□□□ 0.51
VPS53-201ENST00000291074 CLDN20P56880 219 aa18.26■□□□□ 0.51
VPS53-201ENST00000291074 NANOS3P60323 173 aaKnown RBP18.26■□□□□ 0.51
VPS53-201ENST00000291074 MRPS15P82914 257 aaKnown RBP18.26■□□□□ 0.51
VPS53-201ENST00000291074 SLITRK4Q8IW52 837 aa18.26■□□□□ 0.51
VPS53-201ENST00000291074 GFM1Q96RP9 751 aaKnown RBP18.26■□□□□ 0.51
VPS53-201ENST00000291074 CHRNA10Q9GZZ6 450 aa18.26■□□□□ 0.51
VPS53-201ENST00000291074 RAB33BQ9H082 229 aa18.26■□□□□ 0.51
VPS53-201ENST00000291074 CENPXA8MT69 81 aa18.26■□□□□ 0.51
VPS53-201ENST00000291074 KHNYNO15037 678 aaKnown RBP18.26■□□□□ 0.51
VPS53-201ENST00000291074 HCRTR2O43614 444 aa18.26■□□□□ 0.51
VPS53-201ENST00000291074 ASAH2BP0C7U1 165 aa18.26■□□□□ 0.51
VPS53-201ENST00000291074 EPXP11678 715 aa18.26■□□□□ 0.51
VPS53-201ENST00000291074 SRP9P49458 86 aaKnown RBP18.26■□□□□ 0.51
VPS53-201ENST00000291074 NR0B1P51843 470 aaKnown RBP18.26■□□□□ 0.51
VPS53-201ENST00000291074 RPL18Q07020 188 aaKnown RBP18.26■□□□□ 0.51
VPS53-201ENST00000291074 ISXQ2M1V0 245 aa18.26■□□□□ 0.51
VPS53-201ENST00000291074 MARCH3Q86UD3 253 aa18.26■□□□□ 0.51
VPS53-201ENST00000291074 OR1F2PQ96R84 312 aa18.26■□□□□ 0.51
VPS53-201ENST00000291074 OR2B2Q9GZK3 357 aa18.26■□□□□ 0.51
VPS53-201ENST00000291074 SLC25A18Q9H1K4 315 aa18.26■□□□□ 0.51
VPS53-201ENST00000291074 SRA1Q9HD15 236 aaKnown RBP18.26■□□□□ 0.51
VPS53-201ENST00000291074 EXOSC3Q9NQT5 275 aaKnown RBP18.26■□□□□ 0.51
VPS53-201ENST00000291074 TRAV1-2A0A0B4J238 106 aa18.26■□□□□ 0.51
VPS53-201ENST00000291074 ACOD1A6NK06 481 aa18.26■□□□□ 0.51
VPS53-201ENST00000291074 FLRT2O43155 660 aa18.26■□□□□ 0.51
VPS53-201ENST00000291074 UCHL1P09936 223 aa18.26■□□□□ 0.51
VPS53-201ENST00000291074 EBPQ15125 230 aaKnown RBP18.26■□□□□ 0.51
VPS53-201ENST00000291074 C7orf57Q8NEG2 295 aa18.26■□□□□ 0.51
VPS53-201ENST00000291074 TAAR8Q969N4 342 aa18.26■□□□□ 0.51
VPS53-201ENST00000291074 BRD7Q9NPI1 651 aa18.26■□□□□ 0.51
VPS53-201ENST00000291074 COL5A1P20908 1838 aaPredicted RBP18.25■□□□□ 0.51
VPS53-201ENST00000291074 TMEM72A0PK05 275 aa18.25■□□□□ 0.51
VPS53-201ENST00000291074 NOTOA8MTQ0 251 aa18.25■□□□□ 0.51
VPS53-201ENST00000291074 RPP14O95059 124 aaKnown RBP18.25■□□□□ 0.51
VPS53-201ENST00000291074 TCEA1P23193 301 aaKnown RBP18.25■□□□□ 0.51
VPS53-201ENST00000291074 UQCRC1P31930 480 aa18.25■□□□□ 0.51
VPS53-201ENST00000291074 EPHA4P54764 986 aa18.25■□□□□ 0.51
VPS53-201ENST00000291074 NSDHLQ15738 373 aa18.25■□□□□ 0.51
VPS53-201ENST00000291074 C1QL3Q5VWW1 255 aa18.25■□□□□ 0.51
VPS53-201ENST00000291074 SHISA6Q6ZSJ9 500 aa18.25■□□□□ 0.51
VPS53-201ENST00000291074 SLC35F3Q8IY50 421 aa18.25■□□□□ 0.51
VPS53-201ENST00000291074 RNF166Q96A37 237 aaPredicted RBP18.25■□□□□ 0.51
VPS53-201ENST00000291074 NOX4Q9NPH5 578 aa18.25■□□□□ 0.51
VPS53-201ENST00000291074 PLSCR3Q9NRY6 295 aa18.25■□□□□ 0.51
VPS53-201ENST00000291074 RXFP3Q9NSD7 469 aa18.25■□□□□ 0.51
VPS53-201ENST00000291074 NPFFR2Q9Y5X5 522 aa18.25■□□□□ 0.51
VPS53-201ENST00000291074 TVP23AA6NH52 213 aa18.25■□□□□ 0.51
VPS53-201ENST00000291074 PIN1P1O15428 100 aa18.25■□□□□ 0.51
VPS53-201ENST00000291074 ARL6IP5O75915 188 aa18.25■□□□□ 0.51
VPS53-201ENST00000291074 OR8G3PP0DMU2 310 aa18.25■□□□□ 0.51
VPS53-201ENST00000291074 FBLP22087 321 aaKnown RBP18.25■□□□□ 0.51
VPS53-201ENST00000291074 IL12BP29460 328 aa18.25■□□□□ 0.51
VPS53-201ENST00000291074 SDHAP31040 664 aa18.25■□□□□ 0.51
VPS53-201ENST00000291074 ELAVL1Q15717 326 aaKnown RBP18.25■□□□□ 0.51
VPS53-201ENST00000291074 MESTQ5EB52 335 aa18.25■□□□□ 0.51
VPS53-201ENST00000291074 EXD3Q8N9H8 876 aa18.25■□□□□ 0.51
VPS53-201ENST00000291074 DERL3Q96Q80 235 aa18.25■□□□□ 0.51
VPS53-201ENST00000291074 TSPAN32Q96QS1 320 aa18.25■□□□□ 0.51
VPS53-201ENST00000291074 MRPS7Q9Y2R9 242 aaKnown RBP18.25■□□□□ 0.51
VPS53-201ENST00000291074 TCRBV16S1A1N1A0A5B0 115 aa18.24■□□□□ 0.51
VPS53-201ENST00000291074 ITPKBP27987 946 aa18.24■□□□□ 0.51
VPS53-201ENST00000291074 HLA-DMAP28067 261 aa18.24■□□□□ 0.51
VPS53-201ENST00000291074 RPS27P42677 84 aaKnown RBP18.24■□□□□ 0.51
VPS53-201ENST00000291074 BIKQ13323 160 aa18.24■□□□□ 0.51
Retrieved 100 of 20,778 RNA–protein pairs in 20.3 ms