RNA–Protein interactions for RNA: ENST00000274030.10

USP53-201, Transcript of ubiquitin specific peptidase 53, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP53, Length 5,936 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-201ENST00000274030 RNF128Q8TEB7 428 aa10.62□□□□□ -0.71
USP53-201ENST00000274030 MUL1Q969V5 352 aa10.62□□□□□ -0.71
USP53-201ENST00000274030 RASD2Q96D21 266 aa10.62□□□□□ -0.71
USP53-201ENST00000274030 OR14A2Q96R54 314 aa10.62□□□□□ -0.71
USP53-201ENST00000274030 METTL9Q9H1A3 318 aa10.62□□□□□ -0.71
USP53-201ENST00000274030 DUSP13Q9UII6 198 aa10.62□□□□□ -0.71
USP53-201ENST00000274030 DOT1LQ8TEK3 1739 aa10.62□□□□□ -0.71
USP53-201ENST00000274030 TPT1P13693 172 aaKnown RBP10.62□□□□□ -0.71
USP53-201ENST00000274030 ELAVL4P26378 380 aaKnown RBP10.62□□□□□ -0.71
USP53-201ENST00000274030 DLX5P56178 289 aa10.62□□□□□ -0.71
USP53-201ENST00000274030 FOXK2Q01167 660 aa10.62□□□□□ -0.71
USP53-201ENST00000274030 SLX4IPQ5VYV7 408 aa10.62□□□□□ -0.71
USP53-201ENST00000274030 RSPO2Q6UXX9 243 aaPredicted RBP10.62□□□□□ -0.71
USP53-201ENST00000274030 PATE1Q8WXA2 126 aa10.62□□□□□ -0.71
USP53-201ENST00000274030 SUCNR1Q9BXA5 334 aa10.62□□□□□ -0.71
USP53-201ENST00000274030 SELENOIQ9C0D9 397 aa10.62□□□□□ -0.71
USP53-201ENST00000274030 COPS3Q9UNS2 423 aa10.62□□□□□ -0.71
USP53-201ENST00000274030 MYH9P35579 1960 aaKnown RBP10.61□□□□□ -0.71
USP53-201ENST00000274030 A0A1W2PPV4 95 aa10.61□□□□□ -0.71
USP53-201ENST00000274030 SEC14L2O76054 403 aa10.61□□□□□ -0.71
USP53-201ENST00000274030 TFAP2AP05549 437 aa10.61□□□□□ -0.71
USP53-201ENST00000274030 PTAFRP25105 342 aa10.61□□□□□ -0.71
USP53-201ENST00000274030 KCNAB1Q14722 419 aa10.61□□□□□ -0.71
USP53-201ENST00000274030 SF3B4Q15427 424 aaKnown RBP eCLIP10.61□□□□□ -0.71
USP53-201ENST00000274030 PGM2L1Q6PCE3 622 aa10.61□□□□□ -0.71
USP53-201ENST00000274030 ENTHD1Q8IYW4 607 aa10.61□□□□□ -0.71
USP53-201ENST00000274030 AMBRA1Q9C0C7 1298 aa10.61□□□□□ -0.71
USP53-201ENST00000274030 BIN3Q9NQY0 253 aa10.61□□□□□ -0.71
USP53-201ENST00000274030 GPATCH2Q9NW75 528 aa10.61□□□□□ -0.71
USP53-201ENST00000274030 TNFRSF10AO00220 468 aa10.61□□□□□ -0.71
USP53-201ENST00000274030 SLC2A1P11166 492 aa10.61□□□□□ -0.71
USP53-201ENST00000274030 APEX1P27695 318 aaKnown RBP10.61□□□□□ -0.71
USP53-201ENST00000274030 ILKQ13418 452 aa10.61□□□□□ -0.71
USP53-201ENST00000274030 MPEG1Q2M385 716 aa10.61□□□□□ -0.71
USP53-201ENST00000274030 GDF7Q7Z4P5 450 aa10.61□□□□□ -0.71
USP53-201ENST00000274030 RNF113BQ8IZP6 322 aaKnown RBP10.61□□□□□ -0.71
USP53-201ENST00000274030 RHOXF1Q8NHV9 184 aa10.61□□□□□ -0.71
USP53-201ENST00000274030 SECTM1Q8WVN6 248 aa10.61□□□□□ -0.71
USP53-201ENST00000274030 FGF22Q9HCT0 170 aa10.61□□□□□ -0.71
USP53-201ENST00000274030 PLCXD1Q9NUJ7 323 aa10.61□□□□□ -0.71
USP53-201ENST00000274030 THAP10Q9P2Z0 257 aaPredicted RBP10.61□□□□□ -0.71
USP53-201ENST00000274030 SNX11Q9Y5W9 270 aa10.61□□□□□ -0.71
USP53-201ENST00000274030 SLC34A2O95436 690 aa10.61□□□□□ -0.71
USP53-201ENST00000274030 SNRNP70P08621 437 aaKnown RBP10.61□□□□□ -0.71
USP53-201ENST00000274030 GABRA5P31644 462 aa10.61□□□□□ -0.71
USP53-201ENST00000274030 ABHD17CQ6PCB6 329 aa10.61□□□□□ -0.71
USP53-201ENST00000274030 ADAMTSL4Q6UY14 1074 aa10.61□□□□□ -0.71
USP53-201ENST00000274030 IDO2Q6ZQW0 420 aa10.61□□□□□ -0.71
USP53-201ENST00000274030 LRRC56Q8IYG6 542 aaPredicted RBP10.61□□□□□ -0.71
USP53-201ENST00000274030 TMEM102Q8N9M5 508 aaPredicted RBP10.61□□□□□ -0.71
USP53-201ENST00000274030 DVL3Q92997 716 aaPredicted RBP10.61□□□□□ -0.71
USP53-201ENST00000274030 TMEM59Q9BXS4 323 aa10.61□□□□□ -0.71
USP53-201ENST00000274030 SLC38A1Q9H2H9 487 aa10.61□□□□□ -0.71
USP53-201ENST00000274030 SLA2Q9H6Q3 261 aa10.61□□□□□ -0.71
USP53-201ENST00000274030 ZNF749O43361 778 aa10.61□□□□□ -0.71
USP53-201ENST00000274030 TIMM8AO60220 97 aaPredicted RBP10.61□□□□□ -0.71
USP53-201ENST00000274030 CLEC2LP0C7M8 214 aa10.61□□□□□ -0.71
USP53-201ENST00000274030 BLVRBP30043 206 aaPredicted RBP10.61□□□□□ -0.71
USP53-201ENST00000274030 CCL11P51671 97 aa10.61□□□□□ -0.71
USP53-201ENST00000274030 MFAP5Q13361 173 aa10.61□□□□□ -0.71
USP53-201ENST00000274030 BATFQ16520 125 aa10.61□□□□□ -0.71
USP53-201ENST00000274030 C14orf28Q4W4Y0 310 aa10.61□□□□□ -0.71
USP53-201ENST00000274030 UBE2NLQ5JXB2 153 aa10.61□□□□□ -0.71
USP53-201ENST00000274030 ZNF684Q5T5D7 378 aa10.61□□□□□ -0.71
USP53-201ENST00000274030 RTL10Q7L3V2 364 aa10.61□□□□□ -0.71
USP53-201ENST00000274030 TAAR8Q969N4 342 aa10.61□□□□□ -0.71
USP53-201ENST00000274030 SGK3Q96BR1 496 aa10.61□□□□□ -0.71
USP53-201ENST00000274030 CLEC2DQ9UHP7 191 aa10.61□□□□□ -0.71
USP53-201ENST00000274030 MDFIC2A0A1B0GVS7 189 aa10.6□□□□□ -0.71
USP53-201ENST00000274030 TCRBV5S1A1TA0A578 114 aa10.6□□□□□ -0.71
USP53-201ENST00000274030 PIGAP37287 484 aa10.6□□□□□ -0.71
USP53-201ENST00000274030 AADACL3Q5VUY0 350 aa10.6□□□□□ -0.71
USP53-201ENST00000274030 HEPHL1Q6MZM0 1159 aa10.6□□□□□ -0.71
USP53-201ENST00000274030 PM20D2Q8IYS1 436 aa10.6□□□□□ -0.71
USP53-201ENST00000274030 ABHD4Q8TB40 342 aa10.6□□□□□ -0.71
USP53-201ENST00000274030 SLC37A2Q8TED4 501 aa10.6□□□□□ -0.71
USP53-201ENST00000274030 OR1E3Q8WZA6 343 aa10.6□□□□□ -0.71
USP53-201ENST00000274030 C12orf49Q9H741 205 aa10.6□□□□□ -0.71
USP53-201ENST00000274030 PSORS1C1Q9UIG5 152 aa10.6□□□□□ -0.71
USP53-201ENST00000274030 RPH3ALQ9UNE2 315 aa10.6□□□□□ -0.71
USP53-201ENST00000274030 WIF1Q9Y5W5 379 aa10.6□□□□□ -0.71
USP53-201ENST00000274030 PLPP1O14494 284 aa10.6□□□□□ -0.71
USP53-201ENST00000274030 SSX4O60224 188 aa10.6□□□□□ -0.71
USP53-201ENST00000274030 PRAMEF4O60810 478 aa10.6□□□□□ -0.71
USP53-201ENST00000274030 NXPH3O95157 252 aa10.6□□□□□ -0.71
USP53-201ENST00000274030 TCN2P20062 427 aa10.6□□□□□ -0.71
USP53-201ENST00000274030 HTR2CP28335 458 aa10.6□□□□□ -0.71
USP53-201ENST00000274030 GDNFP39905 211 aa10.6□□□□□ -0.71
USP53-201ENST00000274030 TPMTP51580 245 aa10.6□□□□□ -0.71
USP53-201ENST00000274030 MEP1BQ16820 701 aa10.6□□□□□ -0.71
USP53-201ENST00000274030 SLC48A1Q6P1K1 146 aa10.6□□□□□ -0.71
USP53-201ENST00000274030 ALKAL2Q6UX46 152 aa10.6□□□□□ -0.71
USP53-201ENST00000274030 NPSR1Q6W5P4 371 aa10.6□□□□□ -0.71
USP53-201ENST00000274030 WBP2Q969T9 261 aa10.6□□□□□ -0.71
USP53-201ENST00000274030 MRPL38Q96DV4 380 aaKnown RBP10.6□□□□□ -0.71
USP53-201ENST00000274030 RAB3CQ96E17 227 aa10.6□□□□□ -0.71
USP53-201ENST00000274030 ELP4Q96EB1 424 aa10.6□□□□□ -0.71
USP53-201ENST00000274030 HDAC8Q9BY41 377 aa10.6□□□□□ -0.71
USP53-201ENST00000274030 SEMA6CQ9H3T2 930 aa10.6□□□□□ -0.71
USP53-201ENST00000274030 ZNF286AQ9HBT8 521 aa10.6□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 28.9 ms