RNA–Protein interactions for RNA: ENST00000263398.10

CD44-201, Transcript of CD44 molecule (Indian blood group), humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CD44, Length 4,589 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-201ENST00000263398 MICAL3Q7RTP6 2002 aa9.96□□□□□ -0.82
CD44-201ENST00000263398 CTNSO60931 367 aa9.96□□□□□ -0.82
CD44-201ENST00000263398 ATP1B1P05026 303 aa9.96□□□□□ -0.82
CD44-201ENST00000263398 CHRM4P08173 479 aa9.96□□□□□ -0.82
CD44-201ENST00000263398 BMP1P13497 986 aa9.96□□□□□ -0.82
CD44-201ENST00000263398 POLR2HP52434 150 aaKnown RBP9.96□□□□□ -0.82
CD44-201ENST00000263398 SORDQ00796 357 aa9.96□□□□□ -0.82
CD44-201ENST00000263398 ZP2Q05996 745 aa9.96□□□□□ -0.82
CD44-201ENST00000263398 FAPQ12884 760 aa9.96□□□□□ -0.82
CD44-201ENST00000263398 FCN2Q15485 313 aa9.96□□□□□ -0.82
CD44-201ENST00000263398 ACTBL2Q562R1 376 aa9.96□□□□□ -0.82
CD44-201ENST00000263398 MANEAQ5SRI9 462 aa9.96□□□□□ -0.82
CD44-201ENST00000263398 NIPAL3Q6P499 406 aa9.96□□□□□ -0.82
CD44-201ENST00000263398 RSPO2Q6UXX9 243 aaPredicted RBP9.96□□□□□ -0.82
CD44-201ENST00000263398 MISPQ8IVT2 679 aa9.96□□□□□ -0.82
CD44-201ENST00000263398 ZNF679Q8IYX0 411 aa9.96□□□□□ -0.82
CD44-201ENST00000263398 OR13C9Q8NGT0 318 aa9.96□□□□□ -0.82
CD44-201ENST00000263398 LCORQ96JN0 433 aaPredicted RBP9.96□□□□□ -0.82
CD44-201ENST00000263398 SLC46A1Q96NT5 459 aa9.96□□□□□ -0.82
CD44-201ENST00000263398 OR14A2Q96R54 314 aa9.96□□□□□ -0.82
CD44-201ENST00000263398 DUSP23Q9BVJ7 150 aa9.96□□□□□ -0.82
CD44-201ENST00000263398 PRR14Q9BWN1 585 aa9.96□□□□□ -0.82
CD44-201ENST00000263398 ZDHHC5Q9C0B5 715 aa9.96□□□□□ -0.82
CD44-201ENST00000263398 MCTS1Q9ULC4 181 aaKnown RBP9.96□□□□□ -0.82
CD44-201ENST00000263398 A0A087WUU8 490 aa9.95□□□□□ -0.82
CD44-201ENST00000263398 TRBV11-1A0A0K0K1C0 115 aa9.95□□□□□ -0.82
CD44-201ENST00000263398 LOC101059915A0A1B0GWI6 518 aaPredicted RBP9.95□□□□□ -0.82
CD44-201ENST00000263398 TCRBV5S2A0A599 114 aa9.95□□□□□ -0.82
CD44-201ENST00000263398 A6NCN8 305 aa9.95□□□□□ -0.82
CD44-201ENST00000263398 B4DXG7 233 aa9.95□□□□□ -0.82
CD44-201ENST00000263398 NUPL2O15504 423 aaKnown RBP9.95□□□□□ -0.82
CD44-201ENST00000263398 IFNA4P05014 189 aa9.95□□□□□ -0.82
CD44-201ENST00000263398 TRAPPC2P0DI81 140 aa9.95□□□□□ -0.82
CD44-201ENST00000263398 TRAPPC2BP0DI82 140 aa9.95□□□□□ -0.82
CD44-201ENST00000263398 NFYAP23511 347 aaPredicted RBP9.95□□□□□ -0.82
CD44-201ENST00000263398 TRHRP34981 398 aaPredicted RBP9.95□□□□□ -0.82
CD44-201ENST00000263398 EFNA3P52797 238 aa9.95□□□□□ -0.82
CD44-201ENST00000263398 ATP1B3P54709 279 aa9.95□□□□□ -0.82
CD44-201ENST00000263398 TAS2R46P59540 309 aa9.95□□□□□ -0.82
CD44-201ENST00000263398 SEC61A1P61619 476 aaKnown RBP9.95□□□□□ -0.82
CD44-201ENST00000263398 MC2RQ01718 297 aa9.95□□□□□ -0.82
CD44-201ENST00000263398 ZNF169Q14929 603 aaPredicted RBP9.95□□□□□ -0.82
CD44-201ENST00000263398 YIF1BQ5BJH7 314 aa9.95□□□□□ -0.82
CD44-201ENST00000263398 OLIG3Q7RTU3 272 aa9.95□□□□□ -0.82
CD44-201ENST00000263398 PPP1R3BQ86XI6 285 aa9.95□□□□□ -0.82
CD44-201ENST00000263398 RBM45Q8IUH3 476 aaKnown RBP9.95□□□□□ -0.82
CD44-201ENST00000263398 CMIPQ8IY22 773 aa9.95□□□□□ -0.82
CD44-201ENST00000263398 CADM3Q8N126 398 aa9.95□□□□□ -0.82
CD44-201ENST00000263398 FRMD1Q8N878 549 aa9.95□□□□□ -0.82
CD44-201ENST00000263398 BOLLQ8N9W6 283 aaKnown RBP9.95□□□□□ -0.82
CD44-201ENST00000263398 OR56B2PQ8NGI1 322 aa9.95□□□□□ -0.82
CD44-201ENST00000263398 SLC7A6Q92536 515 aa9.95□□□□□ -0.82
CD44-201ENST00000263398 VN1R3Q9BXE9 311 aa9.95□□□□□ -0.82
CD44-201ENST00000263398 GABARAPL3Q9BY60 117 aa9.95□□□□□ -0.82
CD44-201ENST00000263398 CHST8Q9H2A9 424 aa9.95□□□□□ -0.82
CD44-201ENST00000263398 FBXO8Q9NRD0 319 aa9.95□□□□□ -0.82
CD44-201ENST00000263398 EHFQ9NZC4 300 aa9.95□□□□□ -0.82
CD44-201ENST00000263398 ETV7Q9Y603 341 aa9.95□□□□□ -0.82
CD44-201ENST00000263398 TRAV36DV7A0A075B6V5 113 aa9.95□□□□□ -0.82
CD44-201ENST00000263398 SLC22A23A1A5C7 686 aa9.95□□□□□ -0.82
CD44-201ENST00000263398 H7C1C5 153 aa9.95□□□□□ -0.82
CD44-201ENST00000263398 HOXC11O43248 304 aaPredicted RBP9.95□□□□□ -0.82
CD44-201ENST00000263398 SUSD5O60279 629 aa9.95□□□□□ -0.82
CD44-201ENST00000263398 OPN1LWP04000 364 aa9.95□□□□□ -0.82
CD44-201ENST00000263398 CD63P08962 238 aa9.95□□□□□ -0.82
CD44-201ENST00000263398 HOXB5P09067 269 aa9.95□□□□□ -0.82
CD44-201ENST00000263398 CD79AP11912 226 aa9.95□□□□□ -0.82
CD44-201ENST00000263398 PPP3CBP16298 524 aa9.95□□□□□ -0.82
CD44-201ENST00000263398 LCN6P62502 163 aa9.95□□□□□ -0.82
CD44-201ENST00000263398 ZNF750Q32MQ0 723 aa9.95□□□□□ -0.82
CD44-201ENST00000263398 SAXO2Q658L1 398 aa9.95□□□□□ -0.82
CD44-201ENST00000263398 SIAH3Q8IW03 269 aa9.95□□□□□ -0.82
CD44-201ENST00000263398 ZNF511Q8NB15 262 aa9.95□□□□□ -0.82
CD44-201ENST00000263398 OR56B1Q8NGI3 324 aa9.95□□□□□ -0.82
CD44-201ENST00000263398 GIMAP5Q96F15 307 aa9.95□□□□□ -0.82
CD44-201ENST00000263398 C19orf43Q9BQ61 176 aa9.95□□□□□ -0.82
CD44-201ENST00000263398 SLCO5A1Q9H2Y9 848 aa9.95□□□□□ -0.82
CD44-201ENST00000263398 IKZF5Q9H5V7 419 aa9.95□□□□□ -0.82
CD44-201ENST00000263398 A0A1B0GTW7 788 aa9.95□□□□□ -0.82
CD44-201ENST00000263398 SULT1B1O43704 296 aa9.95□□□□□ -0.82
CD44-201ENST00000263398 IFNA10P01566 189 aa9.95□□□□□ -0.82
CD44-201ENST00000263398 RPL35P42766 123 aaKnown RBP9.95□□□□□ -0.82
CD44-201ENST00000263398 LBX1P52954 281 aa9.95□□□□□ -0.82
CD44-201ENST00000263398 PCBD1P61457 104 aa9.95□□□□□ -0.82
CD44-201ENST00000263398 TNK1Q13470 666 aa9.95□□□□□ -0.82
CD44-201ENST00000263398 SMAD2Q15796 467 aaKnown RBP9.95□□□□□ -0.82
CD44-201ENST00000263398 EID2Q8N6I1 236 aa9.95□□□□□ -0.82
CD44-201ENST00000263398 STK35Q8TDR2 534 aa9.95□□□□□ -0.82
CD44-201ENST00000263398 TCTEX1D2Q8WW35 142 aa9.95□□□□□ -0.82
CD44-201ENST00000263398 SLC25A46Q96AG3 418 aa9.95□□□□□ -0.82
CD44-201ENST00000263398 TM7SF3Q9NS93 570 aa9.95□□□□□ -0.82
CD44-201ENST00000263398 TRABD2BA6NFA1 517 aa9.95□□□□□ -0.82
CD44-201ENST00000263398 DBHP09172 617 aa9.95□□□□□ -0.82
CD44-201ENST00000263398 NID1P14543 1247 aa9.95□□□□□ -0.82
CD44-201ENST00000263398 SERPINA2P20848 420 aa9.95□□□□□ -0.82
CD44-201ENST00000263398 APLNRP35414 380 aa9.95□□□□□ -0.82
CD44-201ENST00000263398 CXCL12P48061 93 aa9.95□□□□□ -0.82
CD44-201ENST00000263398 CCR9P51686 369 aa9.95□□□□□ -0.82
CD44-201ENST00000263398 ALKBH1Q13686 389 aaKnown RBP9.95□□□□□ -0.82
CD44-201ENST00000263398 SLC35D3Q5M8T2 416 aa9.95□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 30.4 ms