RNA–Protein interactions for RNA: ENST00000262327.9

LIG3-201, Transcript of DNA ligase 3, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIG3, Length 3,055 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-201ENST00000262327 SLC35F2Q8IXU6 374 aa9.21□□□□□ -0.93
LIG3-201ENST00000262327 ADAMTS14Q8WXS8 1223 aa9.21□□□□□ -0.93
LIG3-201ENST00000262327 FAM131CQ96AQ9 280 aa9.21□□□□□ -0.93
LIG3-201ENST00000262327 OR2M2Q96R28 347 aa9.21□□□□□ -0.93
LIG3-201ENST00000262327 SERINC2Q96SA4 455 aa9.21□□□□□ -0.93
LIG3-201ENST00000262327 GFI1Q99684 422 aa9.21□□□□□ -0.93
LIG3-201ENST00000262327 SEC16AO15027 2179 aa9.21□□□□□ -0.93
LIG3-201ENST00000262327 LINC00862A6NCI5 91 aa9.21□□□□□ -0.94
LIG3-201ENST00000262327 YKT6O15498 198 aa9.21□□□□□ -0.94
LIG3-201ENST00000262327 RDH16O75452 317 aa9.21□□□□□ -0.94
LIG3-201ENST00000262327 KHDRBS3O75525 346 aaKnown RBP9.21□□□□□ -0.94
LIG3-201ENST00000262327 KLF8O95600 359 aaPredicted RBP9.21□□□□□ -0.94
LIG3-201ENST00000262327 AGR2O95994 175 aa9.21□□□□□ -0.94
LIG3-201ENST00000262327 ALDOBP05062 364 aa9.21□□□□□ -0.94
LIG3-201ENST00000262327 PROS1P07225 676 aa9.21□□□□□ -0.94
LIG3-201ENST00000262327 TMIGD3P0DMS9 266 aaPredicted RBP9.21□□□□□ -0.94
LIG3-201ENST00000262327 NANOS3P60323 173 aaKnown RBP9.21□□□□□ -0.94
LIG3-201ENST00000262327 UBE2MP61081 183 aaKnown RBP9.21□□□□□ -0.94
LIG3-201ENST00000262327 TSPAN5P62079 268 aa9.21□□□□□ -0.94
LIG3-201ENST00000262327 PLA2G7Q13093 441 aa9.21□□□□□ -0.94
LIG3-201ENST00000262327 KIRREL2Q6UWL6 708 aa9.21□□□□□ -0.94
LIG3-201ENST00000262327 APOOLQ6UXV4 268 aa9.21□□□□□ -0.94
LIG3-201ENST00000262327 RTL4Q6ZR62 310 aa9.21□□□□□ -0.94
LIG3-201ENST00000262327 RNF113BQ8IZP6 322 aaKnown RBP9.21□□□□□ -0.94
LIG3-201ENST00000262327 OR11G2Q8NGC1 345 aa9.21□□□□□ -0.94
LIG3-201ENST00000262327 OR52B4Q8NGK2 314 aa9.21□□□□□ -0.94
LIG3-201ENST00000262327 RIT1Q92963 219 aa9.21□□□□□ -0.94
LIG3-201ENST00000262327 INTS12Q96CB8 462 aaKnown RBP9.21□□□□□ -0.94
LIG3-201ENST00000262327 SMIM19Q96E16 107 aa9.21□□□□□ -0.94
LIG3-201ENST00000262327 ZNF578Q96N58 590 aaPredicted RBP9.21□□□□□ -0.94
LIG3-201ENST00000262327 PPA2Q9H2U2 334 aa9.21□□□□□ -0.94
LIG3-201ENST00000262327 CLEC4MQ9H2X3 399 aaPredicted RBP9.21□□□□□ -0.94
LIG3-201ENST00000262327 CA10Q9NS85 328 aa9.21□□□□□ -0.94
LIG3-201ENST00000262327 ANKRD10Q9NXR5 420 aa9.21□□□□□ -0.94
LIG3-201ENST00000262327 TNRC18O15417 2968 aaPredicted RBP9.21□□□□□ -0.94
LIG3-201ENST00000262327 MPDZO75970 2070 aa9.21□□□□□ -0.94
LIG3-201ENST00000262327 A0A0B4J2E0 115 aa9.2□□□□□ -0.94
LIG3-201ENST00000262327 A0A1B0GX12 115 aa9.2□□□□□ -0.94
LIG3-201ENST00000262327 OR6C68A6NDL8 312 aa9.2□□□□□ -0.94
LIG3-201ENST00000262327 MEIS3P1A6NDR6 274 aa9.2□□□□□ -0.94
LIG3-201ENST00000262327 H7C1C5 153 aa9.2□□□□□ -0.94
LIG3-201ENST00000262327 OR10H2O60403 315 aa9.2□□□□□ -0.94
LIG3-201ENST00000262327 DCTDP32321 178 aa9.2□□□□□ -0.94
LIG3-201ENST00000262327 LCN6P62502 163 aa9.2□□□□□ -0.94
LIG3-201ENST00000262327 GPR18Q14330 331 aa9.2□□□□□ -0.94
LIG3-201ENST00000262327 PTCRAQ6ISU1 281 aaPredicted RBP9.2□□□□□ -0.94
LIG3-201ENST00000262327 ZNF782Q6ZMW2 699 aaPredicted RBP9.2□□□□□ -0.94
LIG3-201ENST00000262327 BTN2A1Q7KYR7 527 aa9.2□□□□□ -0.94
LIG3-201ENST00000262327 MS4A15Q8N5U1 240 aa9.2□□□□□ -0.94
LIG3-201ENST00000262327 CDRT4Q8N9R6 151 aa9.2□□□□□ -0.94
LIG3-201ENST00000262327 OR52H1Q8NGJ2 320 aa9.2□□□□□ -0.94
LIG3-201ENST00000262327 NXPE2Q96DL1 559 aa9.2□□□□□ -0.94
LIG3-201ENST00000262327 GUCD1Q96NT3 240 aa9.2□□□□□ -0.94
LIG3-201ENST00000262327 SORCS2Q96PQ0 1159 aa9.2□□□□□ -0.94
LIG3-201ENST00000262327 RBP7Q96R05 134 aa9.2□□□□□ -0.94
LIG3-201ENST00000262327 CNN2Q99439 309 aaKnown RBP9.2□□□□□ -0.94
LIG3-201ENST00000262327 GAL3ST1Q99999 423 aa9.2□□□□□ -0.94
LIG3-201ENST00000262327 KIR3DX1Q9H7L2 352 aa9.2□□□□□ -0.94
LIG3-201ENST00000262327 HRASLSQ9HDD0 168 aa9.2□□□□□ -0.94
LIG3-201ENST00000262327 IFT46Q9NQC8 304 aa9.2□□□□□ -0.94
LIG3-201ENST00000262327 BLOC1S5-TXNDC5H3BN57 136 aa9.2□□□□□ -0.94
LIG3-201ENST00000262327 BRINP1O60477 761 aa9.2□□□□□ -0.94
LIG3-201ENST00000262327 SIX6O95475 246 aa9.2□□□□□ -0.94
LIG3-201ENST00000262327 SULT1A3P0DMM9 295 aa9.2□□□□□ -0.94
LIG3-201ENST00000262327 SULT1A4P0DMN0 295 aa9.2□□□□□ -0.94
LIG3-201ENST00000262327 SRMP19623 302 aa9.2□□□□□ -0.94
LIG3-201ENST00000262327 POU3F2P20265 443 aaPredicted RBP9.2□□□□□ -0.94
LIG3-201ENST00000262327 SLC6A6P31641 620 aa9.2□□□□□ -0.94
LIG3-201ENST00000262327 CCR9P51686 369 aa9.2□□□□□ -0.94
LIG3-201ENST00000262327 ARFIP1P53367 373 aa9.2□□□□□ -0.94
LIG3-201ENST00000262327 ADPRHP54922 357 aa9.2□□□□□ -0.94
LIG3-201ENST00000262327 TAS2R43P59537 309 aa9.2□□□□□ -0.94
LIG3-201ENST00000262327 GRK1Q15835 563 aa9.2□□□□□ -0.94
LIG3-201ENST00000262327 PRICKLE4Q2TBC4 344 aa9.2□□□□□ -0.94
LIG3-201ENST00000262327 NHLRC1Q6VVB1 395 aa9.2□□□□□ -0.94
LIG3-201ENST00000262327 RNF44Q7L0R7 432 aa9.2□□□□□ -0.94
LIG3-201ENST00000262327 TMPRSS9Q7Z410 1059 aa9.2□□□□□ -0.94
LIG3-201ENST00000262327 ZSCAN2Q7Z7L9 614 aaPredicted RBP9.2□□□□□ -0.94
LIG3-201ENST00000262327 C10orf53Q8N6V4 93 aa9.2□□□□□ -0.94
LIG3-201ENST00000262327 HAVCR2Q8TDQ0 301 aa9.2□□□□□ -0.94
LIG3-201ENST00000262327 SPACA7Q96KW9 195 aa9.2□□□□□ -0.94
LIG3-201ENST00000262327 FOXN4Q96NZ1 517 aa9.2□□□□□ -0.94
LIG3-201ENST00000262327 SARGQ9BW04 601 aa9.2□□□□□ -0.94
LIG3-201ENST00000262327 SAV1Q9H4B6 383 aaPredicted RBP9.2□□□□□ -0.94
LIG3-201ENST00000262327 NCDNQ9UBB6 729 aa9.2□□□□□ -0.94
LIG3-201ENST00000262327 RPS6KB2Q9UBS0 482 aa9.2□□□□□ -0.94
LIG3-201ENST00000262327 ZNF69Q9UC07 566 aa9.2□□□□□ -0.94
LIG3-201ENST00000262327 KLF15Q9UIH9 416 aa9.2□□□□□ -0.94
LIG3-201ENST00000262327 PILRAQ9UKJ1 303 aa9.2□□□□□ -0.94
LIG3-201ENST00000262327 NPFFR2Q9Y5X5 522 aa9.2□□□□□ -0.94
LIG3-201ENST00000262327 MEIKINA0A087WXM9 373 aa9.2□□□□□ -0.94
LIG3-201ENST00000262327 G3V3Q6 166 aa9.2□□□□□ -0.94
LIG3-201ENST00000262327 GPANK1O95872 356 aa9.2□□□□□ -0.94
LIG3-201ENST00000262327 IFNGP01579 166 aa9.2□□□□□ -0.94
LIG3-201ENST00000262327 OR8G3PP0DMU2 310 aa9.2□□□□□ -0.94
LIG3-201ENST00000262327 HOXB2P14652 356 aa9.2□□□□□ -0.94
LIG3-201ENST00000262327 TYRP1P17643 537 aa9.2□□□□□ -0.94
LIG3-201ENST00000262327 RPS4Y1P22090 263 aaKnown RBP9.2□□□□□ -0.94
LIG3-201ENST00000262327 ACAA2P42765 397 aaKnown RBP9.2□□□□□ -0.94
LIG3-201ENST00000262327 TSFMP43897 325 aaKnown RBP9.2□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 26.5 ms