RNA–Protein interactions for RNA: ENST00000254950.12

VPS4A-201, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS4A, Length 4,100 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-201ENST00000254950 SQSTM1Q13501 440 aa10.56□□□□□ -0.72
VPS4A-201ENST00000254950 IL18Q14116 193 aa10.56□□□□□ -0.72
VPS4A-201ENST00000254950 MZT2BQ6NZ67 158 aa10.56□□□□□ -0.72
VPS4A-201ENST00000254950 ZNF322Q6U7Q0 402 aaPredicted RBP10.56□□□□□ -0.72
VPS4A-201ENST00000254950 YRDCQ86U90 279 aaKnown RBP10.56□□□□□ -0.72
VPS4A-201ENST00000254950 LRFN5Q96NI6 719 aa10.56□□□□□ -0.72
VPS4A-201ENST00000254950 BABAM2Q9NXR7 383 aa10.56□□□□□ -0.72
VPS4A-201ENST00000254950 ENPP5Q9UJA9 477 aa10.56□□□□□ -0.72
VPS4A-201ENST00000254950 A0A1W2PQD3 144 aa10.56□□□□□ -0.72
VPS4A-201ENST00000254950 RRP8O43159 456 aaKnown RBP10.56□□□□□ -0.72
VPS4A-201ENST00000254950 CBR3O75828 277 aa10.56□□□□□ -0.72
VPS4A-201ENST00000254950 HPP00738 406 aa10.56□□□□□ -0.72
VPS4A-201ENST00000254950 APOC1P02654 83 aa10.56□□□□□ -0.72
VPS4A-201ENST00000254950 SMIM18P0DKX4 95 aa10.56□□□□□ -0.72
VPS4A-201ENST00000254950 MAKP20794 623 aa10.56□□□□□ -0.72
VPS4A-201ENST00000254950 MNDAP41218 407 aa10.56□□□□□ -0.72
VPS4A-201ENST00000254950 RASGEF1BQ0VAM2 473 aa10.56□□□□□ -0.72
VPS4A-201ENST00000254950 FUT5Q11128 374 aa10.56□□□□□ -0.72
VPS4A-201ENST00000254950 MRPL28Q13084 256 aaKnown RBP10.56□□□□□ -0.72
VPS4A-201ENST00000254950 HSD17B12Q53GQ0 312 aa10.56□□□□□ -0.72
VPS4A-201ENST00000254950 FHL5Q5TD97 284 aa10.56□□□□□ -0.72
VPS4A-201ENST00000254950 JMJD6Q6NYC1 403 aaPredicted RBP10.56□□□□□ -0.72
VPS4A-201ENST00000254950 OR5M1Q8NGP8 315 aa10.56□□□□□ -0.72
VPS4A-201ENST00000254950 DDA1Q9BW61 102 aa10.56□□□□□ -0.72
VPS4A-201ENST00000254950 MMP27Q9H306 513 aa10.56□□□□□ -0.72
VPS4A-201ENST00000254950 CHST11Q9NPF2 352 aa10.56□□□□□ -0.72
VPS4A-201ENST00000254950 ZNF226Q9NYT6 803 aa10.56□□□□□ -0.72
VPS4A-201ENST00000254950 EMC3Q9P0I2 261 aa10.56□□□□□ -0.72
VPS4A-201ENST00000254950 TMEM184BQ9Y519 407 aaPredicted RBP10.56□□□□□ -0.72
VPS4A-201ENST00000254950 KIF26AQ9ULI4 1882 aaPredicted RBP10.56□□□□□ -0.72
VPS4A-201ENST00000254950 CCDC88CQ9P219 2028 aa10.56□□□□□ -0.72
VPS4A-201ENST00000254950 PRAMEF27A3QJZ7 478 aa10.56□□□□□ -0.72
VPS4A-201ENST00000254950 SLC35F4A4IF30 521 aa10.56□□□□□ -0.72
VPS4A-201ENST00000254950 H3BSH0 61 aa10.56□□□□□ -0.72
VPS4A-201ENST00000254950 TBX1O43435 398 aa10.56□□□□□ -0.72
VPS4A-201ENST00000254950 BCAS1O75363 584 aaPredicted RBP10.56□□□□□ -0.72
VPS4A-201ENST00000254950 AKR7A3O95154 331 aa10.56□□□□□ -0.72
VPS4A-201ENST00000254950 PTHP01270 115 aa10.56□□□□□ -0.72
VPS4A-201ENST00000254950 OR2T7P0C7T2 308 aa10.56□□□□□ -0.72
VPS4A-201ENST00000254950 FTH1P19P0C7X4 201 aa10.56□□□□□ -0.72
VPS4A-201ENST00000254950 MSL3P1P0C860 447 aa10.56□□□□□ -0.72
VPS4A-201ENST00000254950 AZGP1P25311 298 aaKnown RBP10.56□□□□□ -0.72
VPS4A-201ENST00000254950 BIDP55957 195 aa10.56□□□□□ -0.72
VPS4A-201ENST00000254950 CARD18P57730 90 aa10.56□□□□□ -0.72
VPS4A-201ENST00000254950 RPL18Q07020 188 aaKnown RBP10.56□□□□□ -0.72
VPS4A-201ENST00000254950 SF3B4Q15427 424 aaKnown RBP eCLIP10.56□□□□□ -0.728e-6■■■□□ 15.3
VPS4A-201ENST00000254950 SHBQ15464 509 aa10.56□□□□□ -0.72
VPS4A-201ENST00000254950 CD226Q15762 336 aa10.56□□□□□ -0.72
VPS4A-201ENST00000254950 OR2G6Q5TZ20 316 aa10.56□□□□□ -0.72
VPS4A-201ENST00000254950 VASNQ6EMK4 673 aa10.56□□□□□ -0.72
VPS4A-201ENST00000254950 LNX2Q8N448 690 aa10.56□□□□□ -0.72
VPS4A-201ENST00000254950 OR11G2Q8NGC1 345 aa10.56□□□□□ -0.72
VPS4A-201ENST00000254950 OR2T27Q8NH04 317 aa10.56□□□□□ -0.72
VPS4A-201ENST00000254950 ZNF566Q969W8 418 aa10.56□□□□□ -0.72
VPS4A-201ENST00000254950 COG8Q96MW5 612 aa10.56□□□□□ -0.72
VPS4A-201ENST00000254950 DCBLD2Q96PD2 775 aa10.56□□□□□ -0.72
VPS4A-201ENST00000254950 ADAM18Q9Y3Q7 739 aa10.56□□□□□ -0.72
VPS4A-201ENST00000254950 NOX1Q9Y5S8 564 aa10.56□□□□□ -0.72
VPS4A-201ENST00000254950 FAM186AA6NE01 2351 aa10.56□□□□□ -0.72
VPS4A-201ENST00000254950 FABP12A6NFH5 140 aa10.55□□□□□ -0.72
VPS4A-201ENST00000254950 RGS9O75916 674 aaPredicted RBP10.55□□□□□ -0.72
VPS4A-201ENST00000254950 ZNF432O94892 652 aa10.55□□□□□ -0.72
VPS4A-201ENST00000254950 TIAF1O95411 115 aa10.55□□□□□ -0.72
VPS4A-201ENST00000254950 ALDH3B2P48448 385 aa10.55□□□□□ -0.72
VPS4A-201ENST00000254950 RPL27P61353 136 aaKnown RBP10.55□□□□□ -0.72
VPS4A-201ENST00000254950 EIF2B1Q14232 305 aaKnown RBP10.55□□□□□ -0.72
VPS4A-201ENST00000254950 ZNF829Q3KNS6 432 aaPredicted RBP10.55□□□□□ -0.72
VPS4A-201ENST00000254950 CD300LDQ6UXZ3 194 aa10.55□□□□□ -0.72
VPS4A-201ENST00000254950 KDM8Q8N371 416 aa10.55□□□□□ -0.72
VPS4A-201ENST00000254950 C17orf47Q8NEP4 570 aa10.55□□□□□ -0.72
VPS4A-201ENST00000254950 OR52I1Q8NGK6 324 aa10.55□□□□□ -0.72
VPS4A-201ENST00000254950 ULBP2Q9BZM5 246 aa10.55□□□□□ -0.72
VPS4A-201ENST00000254950 SPTA1P02549 2419 aa10.55□□□□□ -0.72
VPS4A-201ENST00000254950 SMIM30A4D0T7 59 aa10.55□□□□□ -0.72
VPS4A-201ENST00000254950 CD8B2A6NJW9 211 aa10.55□□□□□ -0.72
VPS4A-201ENST00000254950 CD8BP10966 210 aa10.55□□□□□ -0.72
VPS4A-201ENST00000254950 PIPP12273 146 aaPredicted RBP10.55□□□□□ -0.72
VPS4A-201ENST00000254950 HOXB9P17482 250 aaPredicted RBP10.55□□□□□ -0.72
VPS4A-201ENST00000254950 ENPP1P22413 925 aa10.55□□□□□ -0.72
VPS4A-201ENST00000254950 CFHR1Q03591 330 aa10.55□□□□□ -0.72
VPS4A-201ENST00000254950 MGAT2Q10469 447 aa10.55□□□□□ -0.72
VPS4A-201ENST00000254950 FOXC1Q12948 553 aa10.55□□□□□ -0.72
VPS4A-201ENST00000254950 HNRNPA0Q13151 305 aaKnown RBP10.55□□□□□ -0.72
VPS4A-201ENST00000254950 MELKQ14680 651 aa10.55□□□□□ -0.72
VPS4A-201ENST00000254950 TBC1D25Q3MII6 688 aa10.55□□□□□ -0.72
VPS4A-201ENST00000254950 SLC35D3Q5M8T2 416 aa10.55□□□□□ -0.72
VPS4A-201ENST00000254950 SLC22A16Q86VW1 577 aa10.55□□□□□ -0.72
VPS4A-201ENST00000254950 C4orf36Q96KX1 117 aa10.55□□□□□ -0.72
VPS4A-201ENST00000254950 CEPT1Q9Y6K0 416 aa10.55□□□□□ -0.72
VPS4A-201ENST00000254950 CIB4A0PJX0 185 aa10.55□□□□□ -0.72
VPS4A-201ENST00000254950 FAM166BA8MTA8 275 aa10.55□□□□□ -0.72
VPS4A-201ENST00000254950 PRR33A8MZF0 331 aa10.55□□□□□ -0.72
VPS4A-201ENST00000254950 H3BMQ9 156 aa10.55□□□□□ -0.72
VPS4A-201ENST00000254950 HNRNPCP07910 306 aaKnown RBP eCLIP10.55□□□□□ -0.72
VPS4A-201ENST00000254950 JUNBP17275 347 aaPredicted RBP10.55□□□□□ -0.72
VPS4A-201ENST00000254950 CD82P27701 267 aa10.55□□□□□ -0.72
VPS4A-201ENST00000254950 HTR2AP28223 471 aa10.55□□□□□ -0.72
VPS4A-201ENST00000254950 SDHAP31040 664 aa10.55□□□□□ -0.72
VPS4A-201ENST00000254950 RCVRNP35243 200 aa10.55□□□□□ -0.72
VPS4A-201ENST00000254950 PRKXP51817 358 aa10.55□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 84.7 ms