RNA–Protein interactions for RNA: ENST00000225696.8

NUP88-201, Transcript of nucleoporin 88, humanhuman

TSL 5

Gene NUP88, Length 2,194 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-201ENST00000225696 FBXW5Q969U6 566 aa11.35□□□□□ -0.59
NUP88-201ENST00000225696 TRIM43Q96BQ3 446 aaPredicted RBP11.35□□□□□ -0.59
NUP88-201ENST00000225696 KCNK15Q9H427 330 aa11.35□□□□□ -0.59
NUP88-201ENST00000225696 EXOSC3Q9NQT5 275 aaKnown RBP11.35□□□□□ -0.59
NUP88-201ENST00000225696 DUSP22Q9NRW4 184 aa11.35□□□□□ -0.59
NUP88-201ENST00000225696 PHPT1Q9NRX4 125 aaPredicted RBP11.35□□□□□ -0.59
NUP88-201ENST00000225696 DNAJB12Q9NXW2 375 aaKnown RBP11.35□□□□□ -0.59
NUP88-201ENST00000225696 TAS2R10Q9NYW0 307 aa11.35□□□□□ -0.59
NUP88-201ENST00000225696 EMC3Q9P0I2 261 aa11.35□□□□□ -0.59
NUP88-201ENST00000225696 DPP7Q9UHL4 492 aa11.35□□□□□ -0.59
NUP88-201ENST00000225696 KLF15Q9UIH9 416 aa11.35□□□□□ -0.59
NUP88-201ENST00000225696 FBXL3Q9UKT7 428 aa11.35□□□□□ -0.59
NUP88-201ENST00000225696 MOKQ9UQ07 419 aa11.35□□□□□ -0.59
NUP88-201ENST00000225696 SLC17A4Q9Y2C5 497 aa11.35□□□□□ -0.59
NUP88-201ENST00000225696 V9GY05 133 aa11.35□□□□□ -0.59
NUP88-201ENST00000225696 MPDZO75970 2070 aa11.35□□□□□ -0.59
NUP88-201ENST00000225696 MEIS3P1A6NDR6 274 aa11.34□□□□□ -0.59
NUP88-201ENST00000225696 CREBL2O60519 120 aaPredicted RBP11.34□□□□□ -0.59
NUP88-201ENST00000225696 TSPAN9O75954 239 aa11.34□□□□□ -0.59
NUP88-201ENST00000225696 NDUFB6O95139 128 aa11.34□□□□□ -0.59
NUP88-201ENST00000225696 ECDO95905 644 aaPredicted RBP11.34□□□□□ -0.59
NUP88-201ENST00000225696 IGF2P01344 180 aa11.34□□□□□ -0.59
NUP88-201ENST00000225696 IGFALSP35858 605 aa11.34□□□□□ -0.59
NUP88-201ENST00000225696 RPS27P42677 84 aaKnown RBP11.34□□□□□ -0.59
NUP88-201ENST00000225696 SEC61A1P61619 476 aaKnown RBP11.34□□□□□ -0.59
NUP88-201ENST00000225696 ERVK-25P63136 954 aa11.34□□□□□ -0.59
NUP88-201ENST00000225696 GGTLC2Q14390 218 aa11.34□□□□□ -0.59
NUP88-201ENST00000225696 PON3Q15166 354 aa11.34□□□□□ -0.59
NUP88-201ENST00000225696 PRICKLE4Q2TBC4 344 aa11.34□□□□□ -0.59
NUP88-201ENST00000225696 OTPQ5XKR4 325 aa11.34□□□□□ -0.59
NUP88-201ENST00000225696 OLFML2AQ68BL7 652 aa11.34□□□□□ -0.59
NUP88-201ENST00000225696 FBXO46Q6PJ61 603 aaPredicted RBP11.34□□□□□ -0.59
NUP88-201ENST00000225696 STAC2Q6ZMT1 411 aa11.34□□□□□ -0.59
NUP88-201ENST00000225696 MAMSTRQ6ZN01 415 aa11.34□□□□□ -0.59
NUP88-201ENST00000225696 TMUB2Q71RG4 321 aa11.34□□□□□ -0.59
NUP88-201ENST00000225696 HDDC2Q7Z4H3 204 aa11.34□□□□□ -0.59
NUP88-201ENST00000225696 BIVMQ86UB2 503 aa11.34□□□□□ -0.59
NUP88-201ENST00000225696 ESX1Q8N693 406 aa11.34□□□□□ -0.59
NUP88-201ENST00000225696 CDRT4Q8N9R6 151 aa11.34□□□□□ -0.59
NUP88-201ENST00000225696 OR10AC1Q8NH08 325 aa11.34□□□□□ -0.59
NUP88-201ENST00000225696 TOX2Q96NM4 488 aa11.34□□□□□ -0.59
NUP88-201ENST00000225696 ZNF281Q9Y2X9 895 aa11.34□□□□□ -0.59
NUP88-201ENST00000225696 RWDD3Q9Y3V2 267 aa11.34□□□□□ -0.59
NUP88-201ENST00000225696 ENTPD2Q9Y5L3 495 aa11.34□□□□□ -0.59
NUP88-201ENST00000225696 TRIOO75962 3097 aa11.34□□□□□ -0.59
NUP88-201ENST00000225696 ARID1BQ8NFD5 2236 aaPredicted RBP11.34□□□□□ -0.59
NUP88-201ENST00000225696 FXYD6-FXYD2A0A087WZ82 144 aa11.34□□□□□ -0.59
NUP88-201ENST00000225696 OR6C65A6NJZ3 312 aa11.34□□□□□ -0.59
NUP88-201ENST00000225696 A8MXK9 166 aa11.34□□□□□ -0.59
NUP88-201ENST00000225696 HRKO00198 91 aa11.34□□□□□ -0.59
NUP88-201ENST00000225696 B3GALT2O43825 422 aa11.34□□□□□ -0.59
NUP88-201ENST00000225696 SLC35G6P0C7Q6 338 aa11.34□□□□□ -0.59
NUP88-201ENST00000225696 OR8G3PP0DMU2 310 aa11.34□□□□□ -0.59
NUP88-201ENST00000225696 ZNF35P13682 527 aa11.34□□□□□ -0.59
NUP88-201ENST00000225696 PVRP15151 417 aa11.34□□□□□ -0.59
NUP88-201ENST00000225696 ITPKBP27987 946 aa11.34□□□□□ -0.59
NUP88-201ENST00000225696 S100A11P31949 105 aa11.34□□□□□ -0.59
NUP88-201ENST00000225696 RPL4P36578 427 aaKnown RBP11.34□□□□□ -0.59
NUP88-201ENST00000225696 EFNB2P52799 333 aa11.34□□□□□ -0.59
NUP88-201ENST00000225696 TAS2R20P59543 309 aa11.34□□□□□ -0.59
NUP88-201ENST00000225696 GUCA2AQ02747 115 aa11.34□□□□□ -0.59
NUP88-201ENST00000225696 ODF4Q2M2E3 257 aa11.34□□□□□ -0.59
NUP88-201ENST00000225696 C1orf53Q5VUE5 145 aa11.34□□□□□ -0.59
NUP88-201ENST00000225696 FCRL6Q6DN72 434 aa11.34□□□□□ -0.59
NUP88-201ENST00000225696 PSRC1Q6PGN9 363 aaPredicted RBP11.34□□□□□ -0.59
NUP88-201ENST00000225696 VITQ6UXI7 678 aa11.34□□□□□ -0.59
NUP88-201ENST00000225696 RD3Q7Z3Z2 195 aa11.34□□□□□ -0.59
NUP88-201ENST00000225696 POMGNT2Q8NAT1 580 aa11.34□□□□□ -0.59
NUP88-201ENST00000225696 OR8K3Q8NH51 312 aa11.34□□□□□ -0.59
NUP88-201ENST00000225696 ZDHHC1Q8WTX9 485 aa11.34□□□□□ -0.59
NUP88-201ENST00000225696 TM4SF19Q96DZ7 209 aa11.34□□□□□ -0.59
NUP88-201ENST00000225696 S100A16Q96FQ6 103 aaKnown RBP11.34□□□□□ -0.59
NUP88-201ENST00000225696 SERINC2Q96SA4 455 aa11.34□□□□□ -0.59
NUP88-201ENST00000225696 GINS4Q9BRT9 223 aa11.34□□□□□ -0.59
NUP88-201ENST00000225696 CHST6Q9GZX3 395 aa11.34□□□□□ -0.59
NUP88-201ENST00000225696 CRISPLD2Q9H0B8 497 aa11.34□□□□□ -0.59
NUP88-201ENST00000225696 ARL6Q9H0F7 186 aa11.34□□□□□ -0.59
NUP88-201ENST00000225696 FXYD6Q9H0Q3 95 aa11.34□□□□□ -0.59
NUP88-201ENST00000225696 STARD5Q9NSY2 213 aa11.34□□□□□ -0.59
NUP88-201ENST00000225696 THAP10Q9P2Z0 257 aaPredicted RBP11.34□□□□□ -0.59
NUP88-201ENST00000225696 OPN4Q9UHM6 478 aa11.34□□□□□ -0.59
NUP88-201ENST00000225696 GPR160Q9UJ42 338 aa11.34□□□□□ -0.59
NUP88-201ENST00000225696 PILRAQ9UKJ1 303 aa11.34□□□□□ -0.59
NUP88-201ENST00000225696 DTX4Q9Y2E6 619 aa11.34□□□□□ -0.59
NUP88-201ENST00000225696 LAMA1P25391 3075 aa11.34□□□□□ -0.59
NUP88-201ENST00000225696 ARHGEF17Q96PE2 2063 aaPredicted RBP11.33□□□□□ -0.6
NUP88-201ENST00000225696 TRAV8-7A0A075B6U6 113 aa11.33□□□□□ -0.6
NUP88-201ENST00000225696 TMEM272A0A1B0GTI8 110 aa11.33□□□□□ -0.6
NUP88-201ENST00000225696 GRXCR1A8MXD5 290 aa11.33□□□□□ -0.6
NUP88-201ENST00000225696 SLC31A1O15431 190 aa11.33□□□□□ -0.6
NUP88-201ENST00000225696 PRKNO60260 465 aaPredicted RBP11.33□□□□□ -0.6
NUP88-201ENST00000225696 HIST1H2ABP04908 130 aa11.33□□□□□ -0.6
NUP88-201ENST00000225696 RAP2BP61225 183 aa11.33□□□□□ -0.6
NUP88-201ENST00000225696 RPS15AP62244 130 aaKnown RBP11.33□□□□□ -0.6
NUP88-201ENST00000225696 STX4Q12846 297 aa11.33□□□□□ -0.6
NUP88-201ENST00000225696 ZNF273Q14593 569 aa11.33□□□□□ -0.6
NUP88-201ENST00000225696 NNATQ16517 81 aa11.33□□□□□ -0.6
NUP88-201ENST00000225696 ZNF684Q5T5D7 378 aa11.33□□□□□ -0.6
NUP88-201ENST00000225696 LINC01590Q5TEZ4 76 aa11.33□□□□□ -0.6
NUP88-201ENST00000225696 LINC00114Q6XXX2 140 aa11.33□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 39.8 ms