RNA–Protein interactions for RNA: ENST00000637988.1

SCN1A-217, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS P3 TSL 5 BASIC

Gene SCN1A, Length 8,562 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-217ENST00000637988 GIMAP2Q9UG22 337 aa5.7□□□□□ -1.5
SCN1A-217ENST00000637988 MUTYHQ9UIF7 546 aa5.7□□□□□ -1.5
SCN1A-217ENST00000637988 MMP17Q9ULZ9 603 aa5.7□□□□□ -1.5
SCN1A-217ENST00000637988 AMMECR1Q9Y4X0 333 aaPredicted RBP5.7□□□□□ -1.5
SCN1A-217ENST00000637988 SLCO2B1O94956 709 aa5.7□□□□□ -1.5
SCN1A-217ENST00000637988 CSF1P09603 554 aa5.7□□□□□ -1.5
SCN1A-217ENST00000637988 PBX1P40424 430 aa5.7□□□□□ -1.5
SCN1A-217ENST00000637988 VEGFCP49767 419 aa5.7□□□□□ -1.5
SCN1A-217ENST00000637988 FAPQ12884 760 aa5.7□□□□□ -1.5
SCN1A-217ENST00000637988 IL34Q6ZMJ4 242 aa5.7□□□□□ -1.5
SCN1A-217ENST00000637988 ZBTB46Q86UZ6 589 aa5.7□□□□□ -1.5
SCN1A-217ENST00000637988 WDR5BQ86VZ2 330 aa5.7□□□□□ -1.5
SCN1A-217ENST00000637988 ADAMTS16Q8TE57 1224 aa5.7□□□□□ -1.5
SCN1A-217ENST00000637988 SLC35E1Q96K37 410 aa5.7□□□□□ -1.5
SCN1A-217ENST00000637988 NOX3Q9HBY0 568 aa5.7□□□□□ -1.5
SCN1A-217ENST00000637988 PLCXD1Q9NUJ7 323 aa5.7□□□□□ -1.5
SCN1A-217ENST00000637988 CNIH4Q9P003 139 aa5.7□□□□□ -1.5
SCN1A-217ENST00000637988 USP36Q9P275 1121 aaKnown RBP5.7□□□□□ -1.5
SCN1A-217ENST00000637988 M0R233 179 aa5.7□□□□□ -1.5
SCN1A-217ENST00000637988 RFXAPO00287 272 aa5.7□□□□□ -1.5
SCN1A-217ENST00000637988 DENRO43583 198 aaKnown RBP5.7□□□□□ -1.5
SCN1A-217ENST00000637988 EEDO75530 441 aaKnown RBP5.7□□□□□ -1.5
SCN1A-217ENST00000637988 UTS2O95399 124 aa5.7□□□□□ -1.5
SCN1A-217ENST00000637988 MPLP40238 635 aa5.7□□□□□ -1.5
SCN1A-217ENST00000637988 GPR18Q14330 331 aa5.7□□□□□ -1.5
SCN1A-217ENST00000637988 Q6ZRG5 221 aa5.7□□□□□ -1.5
SCN1A-217ENST00000637988 FAM83HQ6ZRV2 1179 aaPredicted RBP5.7□□□□□ -1.5
SCN1A-217ENST00000637988 WDR31Q8NA23 367 aa5.7□□□□□ -1.5
SCN1A-217ENST00000637988 DTWD2Q8NBA8 298 aa5.7□□□□□ -1.5
SCN1A-217ENST00000637988 TMEM19Q96HH6 336 aa5.7□□□□□ -1.5
SCN1A-217ENST00000637988 DHRS4Q9BTZ2 278 aa5.7□□□□□ -1.5
SCN1A-217ENST00000637988 ACOT13Q9NPJ3 140 aa5.7□□□□□ -1.5
SCN1A-217ENST00000637988 DMAC2Q9NW81 257 aa5.7□□□□□ -1.5
SCN1A-217ENST00000637988 SLC17A6Q9P2U8 582 aa5.7□□□□□ -1.5
SCN1A-217ENST00000637988 SNRNP200O75643 2136 aaKnown RBP5.7□□□□□ -1.5
SCN1A-217ENST00000637988 H3BMQ9 156 aa5.7□□□□□ -1.5
SCN1A-217ENST00000637988 LINC01387J3KSC0 135 aa5.7□□□□□ -1.5
SCN1A-217ENST00000637988 NARSO43776 548 aaKnown RBP5.7□□□□□ -1.5
SCN1A-217ENST00000637988 HOXD11P31277 338 aaPredicted RBP5.7□□□□□ -1.5
SCN1A-217ENST00000637988 ZNF252P-AS1Q0IIN9 211 aa5.7□□□□□ -1.5
SCN1A-217ENST00000637988 PSAPL1Q6NUJ1 521 aa5.7□□□□□ -1.5
SCN1A-217ENST00000637988 PARM1Q6UWI2 310 aa5.7□□□□□ -1.5
SCN1A-217ENST00000637988 KCTD20Q7Z5Y7 419 aa5.7□□□□□ -1.5
SCN1A-217ENST00000637988 CCDC28AQ8IWP9 274 aa5.7□□□□□ -1.5
SCN1A-217ENST00000637988 NAGSQ8N159 534 aa5.7□□□□□ -1.5
SCN1A-217ENST00000637988 UBAC2Q8NBM4 344 aa5.7□□□□□ -1.5
SCN1A-217ENST00000637988 FAM156AQ8NDB6 213 aa5.7□□□□□ -1.5
SCN1A-217ENST00000637988 OR10J5Q8NHC4 309 aa5.7□□□□□ -1.5
SCN1A-217ENST00000637988 DPH1Q9BZG8 443 aa5.7□□□□□ -1.5
SCN1A-217ENST00000637988 IKZF4Q9H2S9 585 aa5.7□□□□□ -1.5
SCN1A-217ENST00000637988 IL37Q9NZH6 218 aa5.7□□□□□ -1.5
SCN1A-217ENST00000637988 UBQLN2Q9UHD9 624 aa5.7□□□□□ -1.5
SCN1A-217ENST00000637988 IER3IP1Q9Y5U9 82 aa5.7□□□□□ -1.5
SCN1A-217ENST00000637988 KCNMB2Q9Y691 235 aa5.7□□□□□ -1.5
SCN1A-217ENST00000637988 TEX264Q9Y6I9 313 aa5.7□□□□□ -1.5
SCN1A-217ENST00000637988 DDX60LQ5H9U9 1706 aaKnown RBP5.7□□□□□ -1.5
SCN1A-217ENST00000637988 TMEM269A0A1B0GVZ9 245 aa5.7□□□□□ -1.5
SCN1A-217ENST00000637988 RNASEK-C17orf49H0YIS7 233 aa5.7□□□□□ -1.5
SCN1A-217ENST00000637988 SLC16A7O60669 478 aa5.7□□□□□ -1.5
SCN1A-217ENST00000637988 GLAP06280 429 aa5.7□□□□□ -1.5
SCN1A-217ENST00000637988 METTL15P1P0C7V9 234 aa5.7□□□□□ -1.5
SCN1A-217ENST00000637988 MYOGP15173 224 aa5.7□□□□□ -1.5
SCN1A-217ENST00000637988 HLA-FP30511 346 aa5.7□□□□□ -1.5
SCN1A-217ENST00000637988 ECI1P42126 302 aa5.7□□□□□ -1.5
SCN1A-217ENST00000637988 EXOSC7Q15024 291 aaKnown RBP5.7□□□□□ -1.5
SCN1A-217ENST00000637988 CYP1B1Q16678 543 aa5.7□□□□□ -1.5
SCN1A-217ENST00000637988 ZNF766Q5HY98 468 aa5.7□□□□□ -1.5
SCN1A-217ENST00000637988 PLXDC2Q6UX71 529 aa5.7□□□□□ -1.5
SCN1A-217ENST00000637988 OR5W2Q8NH69 310 aa5.7□□□□□ -1.5
SCN1A-217ENST00000637988 APOBEC4Q8WW27 367 aaKnown RBP5.7□□□□□ -1.5
SCN1A-217ENST00000637988 RNF38Q9H0F5 515 aa5.7□□□□□ -1.5
SCN1A-217ENST00000637988 CORINQ9Y5Q5 1042 aa5.7□□□□□ -1.5
SCN1A-217ENST00000637988 DCDC2BA2VCK2 349 aa5.69□□□□□ -1.5
SCN1A-217ENST00000637988 TULP2O00295 520 aa5.69□□□□□ -1.5
SCN1A-217ENST00000637988 ARHGAP33O14559 1287 aa5.69□□□□□ -1.5
SCN1A-217ENST00000637988 ELAVL4P26378 380 aaKnown RBP5.69□□□□□ -1.5
SCN1A-217ENST00000637988 CD82P27701 267 aa5.69□□□□□ -1.5
SCN1A-217ENST00000637988 HNF4GQ14541 408 aa5.69□□□□□ -1.5
SCN1A-217ENST00000637988 UBE2NLQ5JXB2 153 aa5.69□□□□□ -1.5
SCN1A-217ENST00000637988 C6orf136Q5SQH8 315 aa5.69□□□□□ -1.5
SCN1A-217ENST00000637988 RGS7BPQ6MZT1 257 aaPredicted RBP5.69□□□□□ -1.5
SCN1A-217ENST00000637988 ENTHD1Q8IYW4 607 aa5.69□□□□□ -1.5
SCN1A-217ENST00000637988 TMEM130Q8N3G9 435 aa5.69□□□□□ -1.5
SCN1A-217ENST00000637988 UBE2FQ969M7 185 aa5.69□□□□□ -1.5
SCN1A-217ENST00000637988 ZBP1Q9H171 429 aa5.69□□□□□ -1.5
SCN1A-217ENST00000637988 MTG2Q9H4K7 406 aa5.69□□□□□ -1.5
SCN1A-217ENST00000637988 DRGXA6NNA5 263 aa5.69□□□□□ -1.5
SCN1A-217ENST00000637988 HIDE1A8MVS5 230 aa5.69□□□□□ -1.5
SCN1A-217ENST00000637988 DOK2O60496 412 aa5.69□□□□□ -1.5
SCN1A-217ENST00000637988 APOBEC1P41238 236 aaKnown RBP5.69□□□□□ -1.5
SCN1A-217ENST00000637988 ALDH3B1P43353 468 aa5.69□□□□□ -1.5
SCN1A-217ENST00000637988 KIAA1024LP59773 190 aa5.69□□□□□ -1.5
SCN1A-217ENST00000637988 TLE4Q04727 773 aa5.69□□□□□ -1.5
SCN1A-217ENST00000637988 TRA2AQ13595 282 aaKnown RBP eCLIP5.69□□□□□ -1.5
SCN1A-217ENST00000637988 SLC5A12Q1EHB4 618 aa5.69□□□□□ -1.5
SCN1A-217ENST00000637988 HMGN2P46Q86SG4 172 aa5.69□□□□□ -1.5
SCN1A-217ENST00000637988 AGAP11Q8TF27 550 aa5.69□□□□□ -1.5
SCN1A-217ENST00000637988 WBP2Q969T9 261 aa5.69□□□□□ -1.5
SCN1A-217ENST00000637988 BIRC7Q96CA5 298 aa5.69□□□□□ -1.5
SCN1A-217ENST00000637988 SLC35A4Q96G79 324 aa5.69□□□□□ -1.5
Retrieved 100 of 20,778 RNA–protein pairs in 41 ms