RNA–Protein interactions for RNA: ENST00000637968.1

SCN1A-216, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 4,614 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-216ENST00000637968 CCR8P51685 355 aa5.33□□□□□ -1.56
SCN1A-216ENST00000637968 POLR2HP52434 150 aaKnown RBP5.33□□□□□ -1.56
SCN1A-216ENST00000637968 TAS2R19P59542 299 aa5.33□□□□□ -1.56
SCN1A-216ENST00000637968 MRPS11P82912 194 aaKnown RBP5.33□□□□□ -1.56
SCN1A-216ENST00000637968 CDK5Q00535 292 aa5.33□□□□□ -1.56
SCN1A-216ENST00000637968 RASGEF1BQ0VAM2 473 aa5.33□□□□□ -1.56
SCN1A-216ENST00000637968 TAF9Q16594 264 aa5.33□□□□□ -1.56
SCN1A-216ENST00000637968 TTLL9Q3SXZ7 439 aa5.33□□□□□ -1.56
SCN1A-216ENST00000637968 RNF219Q5W0B1 726 aaPredicted RBP5.33□□□□□ -1.56
SCN1A-216ENST00000637968 NCBP2-AS2Q69YL0 99 aa5.33□□□□□ -1.56
SCN1A-216ENST00000637968 COX15Q7KZN9 410 aa5.33□□□□□ -1.56
SCN1A-216ENST00000637968 C6orf120Q7Z4R8 191 aa5.33□□□□□ -1.56
SCN1A-216ENST00000637968 CATSPERDQ86XM0 798 aa5.33□□□□□ -1.56
SCN1A-216ENST00000637968 ACBD7Q8N6N7 88 aa5.33□□□□□ -1.56
SCN1A-216ENST00000637968 SLC30A7Q8NEW0 376 aa5.33□□□□□ -1.56
SCN1A-216ENST00000637968 SAT2Q96F10 170 aaPredicted RBP5.33□□□□□ -1.56
SCN1A-216ENST00000637968 TAAR9Q96RI9 348 aa5.33□□□□□ -1.56
SCN1A-216ENST00000637968 OR11A1Q9GZK7 315 aa5.33□□□□□ -1.56
SCN1A-216ENST00000637968 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP5.33□□□□□ -1.56
SCN1A-216ENST00000637968 CD84Q9UIB8 345 aa5.33□□□□□ -1.56
SCN1A-216ENST00000637968 CBLCQ9ULV8 474 aa5.33□□□□□ -1.56
SCN1A-216ENST00000637968 SLIT2O94813 1529 aa5.33□□□□□ -1.56
SCN1A-216ENST00000637968 A0A0A6YYC8 382 aaPredicted RBP5.33□□□□□ -1.56
SCN1A-216ENST00000637968 SERTM2A0A1B0GWG4 89 aa5.33□□□□□ -1.56
SCN1A-216ENST00000637968 TMEM129A0AVI4 362 aa5.33□□□□□ -1.56
SCN1A-216ENST00000637968 AQP7P3A6NL99 342 aa5.33□□□□□ -1.56
SCN1A-216ENST00000637968 GJE1A6NN92 205 aa5.33□□□□□ -1.56
SCN1A-216ENST00000637968 FAM171A2A8MVW0 826 aa5.33□□□□□ -1.56
SCN1A-216ENST00000637968 I3L1I5 382 aaPredicted RBP5.33□□□□□ -1.56
SCN1A-216ENST00000637968 EIF1AYO14602 144 aaKnown RBP5.33□□□□□ -1.56
SCN1A-216ENST00000637968 INSIG1O15503 277 aa5.33□□□□□ -1.56
SCN1A-216ENST00000637968 RPP40O75818 363 aaKnown RBP5.33□□□□□ -1.56
SCN1A-216ENST00000637968 OR2A4O95047 310 aa5.33□□□□□ -1.56
SCN1A-216ENST00000637968 OPN1SWP03999 348 aa5.33□□□□□ -1.56
SCN1A-216ENST00000637968 ICAM1P05362 532 aa5.33□□□□□ -1.56
SCN1A-216ENST00000637968 PET100P0DJ07 73 aa5.33□□□□□ -1.56
SCN1A-216ENST00000637968 LAG3P18627 525 aa5.33□□□□□ -1.56
SCN1A-216ENST00000637968 TUBG1P23258 451 aa5.33□□□□□ -1.56
SCN1A-216ENST00000637968 EIF1AXP47813 144 aaKnown RBP5.33□□□□□ -1.56
SCN1A-216ENST00000637968 MTNR1AP48039 350 aa5.33□□□□□ -1.56
SCN1A-216ENST00000637968 DGKGP49619 791 aa5.33□□□□□ -1.56
SCN1A-216ENST00000637968 CYCSP99999 105 aaKnown RBP5.33□□□□□ -1.56
SCN1A-216ENST00000637968 AWAT2Q6E213 333 aa5.33□□□□□ -1.56
SCN1A-216ENST00000637968 GLB1LQ6UWU2 654 aa5.33□□□□□ -1.56
SCN1A-216ENST00000637968 TMEM91Q6ZNR0 172 aa5.33□□□□□ -1.56
SCN1A-216ENST00000637968 GLT6D1Q7Z4J2 308 aa5.33□□□□□ -1.56
SCN1A-216ENST00000637968 TOMM40LQ969M1 308 aa5.33□□□□□ -1.56
SCN1A-216ENST00000637968 PGLYRP2Q96PD5 576 aa5.33□□□□□ -1.56
SCN1A-216ENST00000637968 OR2A7Q96R45 310 aa5.33□□□□□ -1.56
SCN1A-216ENST00000637968 FIZ1Q96SL8 496 aa5.33□□□□□ -1.56
SCN1A-216ENST00000637968 SPATC1LQ9H0A9 340 aa5.33□□□□□ -1.56
SCN1A-216ENST00000637968 NMNAT1Q9HAN9 279 aaPredicted RBP5.33□□□□□ -1.56
SCN1A-216ENST00000637968 SLC25A19Q9HC21 320 aa5.33□□□□□ -1.56
SCN1A-216ENST00000637968 CAPN10Q9HC96 672 aa5.33□□□□□ -1.56
SCN1A-216ENST00000637968 GKN1Q9NS71 199 aa5.33□□□□□ -1.56
SCN1A-216ENST00000637968 GALPQ9UBC7 116 aa5.33□□□□□ -1.56
SCN1A-216ENST00000637968 CHRNA9Q9UGM1 479 aa5.33□□□□□ -1.56
SCN1A-216ENST00000637968 AFDNP55196 1824 aaKnown RBP5.33□□□□□ -1.56
SCN1A-216ENST00000637968 TBC1D3BA6NDS4 549 aa5.32□□□□□ -1.56
SCN1A-216ENST00000637968 EEF1E1-BLOC1S5C9J1V9 151 aa5.32□□□□□ -1.56
SCN1A-216ENST00000637968 GFYI3L273 518 aa5.32□□□□□ -1.56
SCN1A-216ENST00000637968 COCHO43405 550 aa5.32□□□□□ -1.56
SCN1A-216ENST00000637968 PSMD10O75832 226 aa5.32□□□□□ -1.56
SCN1A-216ENST00000637968 FGBP02675 491 aa5.32□□□□□ -1.56
SCN1A-216ENST00000637968 CSF1P09603 554 aa5.32□□□□□ -1.56
SCN1A-216ENST00000637968 ETFAP13804 333 aa5.32□□□□□ -1.56
SCN1A-216ENST00000637968 AKR1A1P14550 325 aa5.32□□□□□ -1.56
SCN1A-216ENST00000637968 CCKARP32238 428 aa5.32□□□□□ -1.56
SCN1A-216ENST00000637968 OAZ1P54368 228 aa5.32□□□□□ -1.56
SCN1A-216ENST00000637968 TAS2R43P59537 309 aa5.32□□□□□ -1.56
SCN1A-216ENST00000637968 WDR5P61964 334 aaKnown RBP5.32□□□□□ -1.56
SCN1A-216ENST00000637968 JOSD1Q15040 202 aaPredicted RBP5.32□□□□□ -1.56
SCN1A-216ENST00000637968 RPE65Q16518 533 aa5.32□□□□□ -1.56
SCN1A-216ENST00000637968 PTPRNQ16849 979 aa5.32□□□□□ -1.56
SCN1A-216ENST00000637968 TBC1D3GQ6DHY5 549 aa5.32□□□□□ -1.56
SCN1A-216ENST00000637968 OR8G2PQ6IF36 304 aa5.32□□□□□ -1.56
SCN1A-216ENST00000637968 PAQR6Q6TCH4 344 aa5.32□□□□□ -1.56
SCN1A-216ENST00000637968 SERPINA11Q86U17 422 aa5.32□□□□□ -1.56
SCN1A-216ENST00000637968 C1QL4Q86Z23 238 aa5.32□□□□□ -1.56
SCN1A-216ENST00000637968 OR52I1Q8NGK6 324 aa5.32□□□□□ -1.56
SCN1A-216ENST00000637968 MCHR2Q969V1 340 aa5.32□□□□□ -1.56
SCN1A-216ENST00000637968 CDKN2AIPNLQ96HQ2 116 aa5.32□□□□□ -1.56
SCN1A-216ENST00000637968 CASD1Q96PB1 797 aa5.32□□□□□ -1.56
SCN1A-216ENST00000637968 SARGQ9BW04 601 aa5.32□□□□□ -1.56
SCN1A-216ENST00000637968 ADAM19Q9H013 955 aa5.32□□□□□ -1.56
SCN1A-216ENST00000637968 ZNF552Q9H707 407 aaPredicted RBP5.32□□□□□ -1.56
SCN1A-216ENST00000637968 CHST11Q9NPF2 352 aa5.32□□□□□ -1.56
SCN1A-216ENST00000637968 CLEC5AQ9NY25 188 aa5.32□□□□□ -1.56
SCN1A-216ENST00000637968 ZFP30Q9Y2G7 519 aa5.32□□□□□ -1.56
SCN1A-216ENST00000637968 NAV1Q8NEY1 1877 aa5.32□□□□□ -1.56
SCN1A-216ENST00000637968 TBC1D3DA0A087WVF3 549 aa5.32□□□□□ -1.56
SCN1A-216ENST00000637968 TBC1D3IA0A087WXS9 549 aa5.32□□□□□ -1.56
SCN1A-216ENST00000637968 TBC1D3EA0A087X179 549 aa5.32□□□□□ -1.56
SCN1A-216ENST00000637968 LOC102724200A0A096LPH7 203 aaPredicted RBP5.32□□□□□ -1.56
SCN1A-216ENST00000637968 SERPINE3A8MV23 424 aa5.32□□□□□ -1.56
SCN1A-216ENST00000637968 TBC1D3LB9A6J9 549 aa5.32□□□□□ -1.56
SCN1A-216ENST00000637968 PRICKLE3O43900 615 aaPredicted RBP5.32□□□□□ -1.56
SCN1A-216ENST00000637968 ECI2O75521 394 aa5.32□□□□□ -1.56
SCN1A-216ENST00000637968 ATP1B1P05026 303 aa5.32□□□□□ -1.56
SCN1A-216ENST00000637968 SHC1P29353 583 aa5.32□□□□□ -1.56
Retrieved 100 of 20,778 RNA–protein pairs in 38.4 ms