RNA–Protein interactions for RNA: ENST00000637050.1

CLN3-254, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,684 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-254ENST00000637050 ARHGAP11AQ6P4F7 1023 aa16.6■□□□□ 0.25
CLN3-254ENST00000637050 IGFL2Q6UWQ7 119 aa16.6■□□□□ 0.25
CLN3-254ENST00000637050 ERMAPQ96PL5 475 aaPredicted RBP16.6■□□□□ 0.25
CLN3-254ENST00000637050 SIGLEC11Q96RL6 698 aa16.6■□□□□ 0.25
CLN3-254ENST00000637050 MRPL39Q9NYK5 338 aaKnown RBP16.6■□□□□ 0.25
CLN3-254ENST00000637050 TAS2R5Q9NYW4 299 aa16.6■□□□□ 0.25
CLN3-254ENST00000637050 KLF13Q9Y2Y9 288 aaPredicted RBP16.6■□□□□ 0.25
CLN3-254ENST00000637050 CORINQ9Y5Q5 1042 aa16.6■□□□□ 0.25
CLN3-254ENST00000637050 IER3IP1Q9Y5U9 82 aa16.6■□□□□ 0.25
CLN3-254ENST00000637050 OR2M5A3KFT3 312 aa16.59■□□□□ 0.25
CLN3-254ENST00000637050 LIPT2A6NK58 231 aa16.59■□□□□ 0.25
CLN3-254ENST00000637050 IDH3BO43837 385 aa16.59■□□□□ 0.25
CLN3-254ENST00000637050 MRPS14O60783 128 aaKnown RBP16.59■□□□□ 0.25
CLN3-254ENST00000637050 CD14P08571 375 aa16.59■□□□□ 0.25
CLN3-254ENST00000637050 APEHP13798 732 aaKnown RBP16.59■□□□□ 0.25
CLN3-254ENST00000637050 SLC15A1P46059 708 aa16.59■□□□□ 0.25
CLN3-254ENST00000637050 NR1H2P55055 460 aa16.59■□□□□ 0.25
CLN3-254ENST00000637050 B3GALT5-AS1P59052 145 aa16.59■□□□□ 0.25
CLN3-254ENST00000637050 PIGFQ07326 219 aa16.59■□□□□ 0.25
CLN3-254ENST00000637050 AADACL4Q5VUY2 407 aa16.59■□□□□ 0.25
CLN3-254ENST00000637050 RAET1LQ5VY80 246 aa16.59■□□□□ 0.25
CLN3-254ENST00000637050 AHSA2Q719I0 299 aa16.59■□□□□ 0.25
CLN3-254ENST00000637050 ANKK1Q8NFD2 765 aa16.59■□□□□ 0.25
CLN3-254ENST00000637050 DTNBP1Q96EV8 351 aa16.59■□□□□ 0.25
CLN3-254ENST00000637050 PIGQQ9BRB3 760 aa16.59■□□□□ 0.25
CLN3-254ENST00000637050 KATNB1Q9BVA0 655 aa16.59■□□□□ 0.25
CLN3-254ENST00000637050 ASPNQ9BXN1 380 aa16.59■□□□□ 0.25
CLN3-254ENST00000637050 OR2B2Q9GZK3 357 aa16.59■□□□□ 0.25
CLN3-254ENST00000637050 NDEL1Q9GZM8 345 aa16.59■□□□□ 0.25
CLN3-254ENST00000637050 HINT3Q9NQE9 182 aaKnown RBP16.59■□□□□ 0.25
CLN3-254ENST00000637050 CNOT2Q9NZN8 540 aaKnown RBP16.59■□□□□ 0.25
CLN3-254ENST00000637050 ERVK-18Q9QC07 812 aa16.59■□□□□ 0.25
CLN3-254ENST00000637050 SEC14L4Q9UDX3 406 aa16.59■□□□□ 0.25
CLN3-254ENST00000637050 SLC6A5Q9Y345 797 aa16.59■□□□□ 0.25
CLN3-254ENST00000637050 ADAM18Q9Y3Q7 739 aa16.59■□□□□ 0.25
CLN3-254ENST00000637050 DCHS1Q96JQ0 3298 aa16.59■□□□□ 0.25
CLN3-254ENST00000637050 RIIAD1A6NNX1 92 aa16.59■□□□□ 0.25
CLN3-254ENST00000637050 M0R082 166 aa16.59■□□□□ 0.25
CLN3-254ENST00000637050 PRODHO43272 600 aa16.59■□□□□ 0.25
CLN3-254ENST00000637050 CD46P15529 392 aa16.59■□□□□ 0.25
CLN3-254ENST00000637050 NOS3P29474 1203 aa16.59■□□□□ 0.25
CLN3-254ENST00000637050 RPL5P46777 297 aaKnown RBP16.59■□□□□ 0.25
CLN3-254ENST00000637050 ARG2P78540 354 aa16.59■□□□□ 0.25
CLN3-254ENST00000637050 MYBPHQ13203 477 aa16.59■□□□□ 0.25
CLN3-254ENST00000637050 OR7A5Q15622 319 aa16.59■□□□□ 0.25
CLN3-254ENST00000637050 FAM122BQ7Z309 247 aa16.59■□□□□ 0.25
CLN3-254ENST00000637050 SPARTQ8N0X7 666 aa16.59■□□□□ 0.25
CLN3-254ENST00000637050 SCAIQ8N9R8 606 aa16.59■□□□□ 0.25
CLN3-254ENST00000637050 ZNF417Q8TAU3 575 aa16.59■□□□□ 0.25
CLN3-254ENST00000637050 RELTQ969Z4 430 aa16.59■□□□□ 0.25
CLN3-254ENST00000637050 SCMH1Q96GD3 660 aa16.59■□□□□ 0.25
CLN3-254ENST00000637050 ZNF587Q96SQ5 575 aaPredicted RBP16.59■□□□□ 0.25
CLN3-254ENST00000637050 COPS4Q9BT78 406 aa16.59■□□□□ 0.25
CLN3-254ENST00000637050 TMEM185BQ9H7F4 350 aa16.59■□□□□ 0.25
CLN3-254ENST00000637050 KLHL1Q9NR64 748 aa16.59■□□□□ 0.25
CLN3-254ENST00000637050 DKK4Q9UBT3 224 aa16.59■□□□□ 0.25
CLN3-254ENST00000637050 RPL36Q9Y3U8 105 aaKnown RBP16.59■□□□□ 0.25
CLN3-254ENST00000637050 EFCAB10A6NFE3 127 aa16.58■□□□□ 0.24
CLN3-254ENST00000637050 PLPP3O14495 311 aa16.58■□□□□ 0.24
CLN3-254ENST00000637050 RGS10O43665 173 aa16.58■□□□□ 0.24
CLN3-254ENST00000637050 IFNGP01579 166 aa16.58■□□□□ 0.24
CLN3-254ENST00000637050 PIPP12273 146 aaPredicted RBP16.58■□□□□ 0.24
CLN3-254ENST00000637050 SHC1P29353 583 aa16.58■□□□□ 0.24
CLN3-254ENST00000637050 CTXN1P60606 82 aa16.58■□□□□ 0.24
CLN3-254ENST00000637050 ERVK-25P63136 954 aa16.58■□□□□ 0.24
CLN3-254ENST00000637050 ZNF91Q05481 1191 aa16.58■□□□□ 0.24
CLN3-254ENST00000637050 PMS2P3Q13401 168 aa16.58■□□□□ 0.24
CLN3-254ENST00000637050 TOMM20Q15388 145 aa16.58■□□□□ 0.24
CLN3-254ENST00000637050 NXNL2Q5VZ03 156 aa16.58■□□□□ 0.24
CLN3-254ENST00000637050 CXXC5Q7LFL8 322 aaKnown RBP16.58■□□□□ 0.24
CLN3-254ENST00000637050 PRSS48Q7RTY5 328 aa16.58■□□□□ 0.24
CLN3-254ENST00000637050 CPOQ8IVL8 374 aa16.58■□□□□ 0.24
CLN3-254ENST00000637050 FAM83FQ8NEG4 500 aaPredicted RBP16.58■□□□□ 0.24
CLN3-254ENST00000637050 SLC39A7Q92504 469 aa16.58■□□□□ 0.24
CLN3-254ENST00000637050 MYDGFQ969H8 173 aa16.58■□□□□ 0.24
CLN3-254ENST00000637050 C5orf34Q96MH7 638 aa16.58■□□□□ 0.24
CLN3-254ENST00000637050 TAPBPLQ9BX59 468 aa16.58■□□□□ 0.24
CLN3-254ENST00000637050 KLHL21Q9UJP4 597 aa16.58■□□□□ 0.24
CLN3-254ENST00000637050 HDGFL3Q9Y3E1 203 aa16.58■□□□□ 0.24
CLN3-254ENST00000637050 AKAP13Q12802 2813 aa16.58■□□□□ 0.24
CLN3-254ENST00000637050 DPPA5A6NC42 116 aa16.57■□□□□ 0.24
CLN3-254ENST00000637050 A6NHS1 94 aa16.57■□□□□ 0.24
CLN3-254ENST00000637050 KLRC4-KLRK1H3BQV0 150 aa16.57■□□□□ 0.24
CLN3-254ENST00000637050 IMPA2O14732 288 aa16.57■□□□□ 0.24
CLN3-254ENST00000637050 TXNDC12O95881 172 aa16.57■□□□□ 0.24
CLN3-254ENST00000637050 F13BP05160 661 aa16.57■□□□□ 0.24
CLN3-254ENST00000637050 ADORA3P0DMS8 318 aa16.57■□□□□ 0.24
CLN3-254ENST00000637050 DBTP11182 482 aaKnown RBP16.57■□□□□ 0.24
CLN3-254ENST00000637050 HIST1H1CP16403 213 aaKnown RBP16.57■□□□□ 0.24
CLN3-254ENST00000637050 ZNF3P17036 446 aa16.57■□□□□ 0.24
CLN3-254ENST00000637050 GDF1P27539 372 aa16.57■□□□□ 0.24
CLN3-254ENST00000637050 TNFSF10P50591 281 aa16.57■□□□□ 0.24
CLN3-254ENST00000637050 C19orf57Q0VDD7 668 aa16.57■□□□□ 0.24
CLN3-254ENST00000637050 ITGADQ13349 1161 aa16.57■□□□□ 0.24
CLN3-254ENST00000637050 TMEM176BQ3YBM2 270 aaPredicted RBP16.57■□□□□ 0.24
CLN3-254ENST00000637050 GALNTL5Q7Z4T8 443 aa16.57■□□□□ 0.24
CLN3-254ENST00000637050 YRDCQ86U90 279 aaKnown RBP16.57■□□□□ 0.24
CLN3-254ENST00000637050 OR14L1PQ8NHC6 308 aa16.57■□□□□ 0.24
CLN3-254ENST00000637050 OR5B2Q96R09 309 aa16.57■□□□□ 0.24
CLN3-254ENST00000637050 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP16.57■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 34 ms