RNA–Protein interactions for RNA: ENST00000635861.1

CLN3-241, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,404 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-241ENST00000635861 ZIC4Q8N9L1 334 aa16.12■□□□□ 0.17
CLN3-241ENST00000635861 PNPT1Q8TCS8 783 aaKnown RBP16.12■□□□□ 0.17
CLN3-241ENST00000635861 FAM168AQ92567 244 aa16.12■□□□□ 0.17
CLN3-241ENST00000635861 WDR55Q9H6Y2 383 aaPredicted RBP16.12■□□□□ 0.17
CLN3-241ENST00000635861 ZNF232Q9UNY5 417 aa16.12■□□□□ 0.17
CLN3-241ENST00000635861 IFT52Q9Y366 437 aa16.12■□□□□ 0.17
CLN3-241ENST00000635861 A0A0G2JPF8 293 aa16.11■□□□□ 0.17
CLN3-241ENST00000635861 HNRNPCL2B2RXH8 293 aa16.11■□□□□ 0.17
CLN3-241ENST00000635861 HNRNPCL3B7ZW38 293 aa16.11■□□□□ 0.17
CLN3-241ENST00000635861 HNRNPCL1O60812 293 aaKnown RBP16.11■□□□□ 0.17
CLN3-241ENST00000635861 AKR7A3O95154 331 aa16.11■□□□□ 0.17
CLN3-241ENST00000635861 TFPTP0C1Z6 253 aa16.11■□□□□ 0.17
CLN3-241ENST00000635861 HNRNPCL4P0DMR1 293 aa16.11■□□□□ 0.17
CLN3-241ENST00000635861 PTNP21246 168 aa16.11■□□□□ 0.17
CLN3-241ENST00000635861 MDH1P40925 334 aaKnown RBP16.11■□□□□ 0.17
CLN3-241ENST00000635861 CRATP43155 626 aa16.11■□□□□ 0.17
CLN3-241ENST00000635861 EFNA4P52798 201 aa16.11■□□□□ 0.17
CLN3-241ENST00000635861 TMEM249Q2WGJ8 235 aa16.11■□□□□ 0.17
CLN3-241ENST00000635861 C3orf36Q3SXR2 165 aa16.11■□□□□ 0.17
CLN3-241ENST00000635861 C6orf52Q5T4I8 152 aa16.11■□□□□ 0.17
CLN3-241ENST00000635861 PRAMEF8Q5VWM4 474 aa16.11■□□□□ 0.17
CLN3-241ENST00000635861 PRAMEF7Q5VXH5 474 aa16.11■□□□□ 0.17
CLN3-241ENST00000635861 STK35Q8TDR2 534 aa16.11■□□□□ 0.17
CLN3-241ENST00000635861 ITCHQ96J02 903 aa16.11■□□□□ 0.17
CLN3-241ENST00000635861 TPT1P8Q9HAU6 139 aa16.11■□□□□ 0.17
CLN3-241ENST00000635861 SDR39U1Q9NRG7 319 aaPredicted RBP16.11■□□□□ 0.17
CLN3-241ENST00000635861 RLIMQ9NVW2 624 aa16.11■□□□□ 0.17
CLN3-241ENST00000635861 TMEM45AQ9NWC5 275 aa16.11■□□□□ 0.17
CLN3-241ENST00000635861 CDC42EP3Q9UKI2 254 aa16.11■□□□□ 0.17
CLN3-241ENST00000635861 RASD1Q9Y272 281 aa16.11■□□□□ 0.17
CLN3-241ENST00000635861 ZNF443Q9Y2A4 671 aaPredicted RBP16.11■□□□□ 0.17
CLN3-241ENST00000635861 FRS3O43559 492 aa16.11■□□□□ 0.17
CLN3-241ENST00000635861 FAM107AO95990 144 aa16.11■□□□□ 0.17
CLN3-241ENST00000635861 BCHEP06276 602 aa16.11■□□□□ 0.17
CLN3-241ENST00000635861 SLC25A3Q00325 362 aa16.11■□□□□ 0.17
CLN3-241ENST00000635861 C9orf135Q5VTT2 229 aa16.11■□□□□ 0.17
CLN3-241ENST00000635861 GPAT4Q86UL3 456 aa16.11■□□□□ 0.17
CLN3-241ENST00000635861 VRK2Q86Y07 508 aa16.11■□□□□ 0.17
CLN3-241ENST00000635861 CADM2Q8N3J6 435 aa16.11■□□□□ 0.17
CLN3-241ENST00000635861 SLC38A5Q8WUX1 472 aa16.11■□□□□ 0.17
CLN3-241ENST00000635861 ZNF385AQ96PM9 386 aaKnown RBP16.11■□□□□ 0.17
CLN3-241ENST00000635861 SPATA9Q9BWV2 254 aa16.11■□□□□ 0.17
CLN3-241ENST00000635861 C1QTNF6Q9BXI9 259 aa16.11■□□□□ 0.17
CLN3-241ENST00000635861 RAD21L1Q9H4I0 556 aa16.11■□□□□ 0.17
CLN3-241ENST00000635861 FBXO9Q9UK97 447 aaPredicted RBP16.11■□□□□ 0.17
CLN3-241ENST00000635861 ZNF587BE7ETH6 402 aa16.1■□□□□ 0.17
CLN3-241ENST00000635861 NPIPB7O75200 414 aa16.1■□□□□ 0.17
CLN3-241ENST00000635861 KRT33AO76009 404 aa16.1■□□□□ 0.17
CLN3-241ENST00000635861 GKN3PP0CG01 181 aa16.1■□□□□ 0.17
CLN3-241ENST00000635861 ETFAP13804 333 aa16.1■□□□□ 0.17
CLN3-241ENST00000635861 HOXB1P14653 301 aaPredicted RBP16.1■□□□□ 0.17
CLN3-241ENST00000635861 P2RY4P51582 365 aa16.1■□□□□ 0.17
CLN3-241ENST00000635861 SH3BGRP55822 239 aaPredicted RBP16.1■□□□□ 0.17
CLN3-241ENST00000635861 C1orf140Q5VVS0 124 aa16.1■□□□□ 0.17
CLN3-241ENST00000635861 NXNQ6DKJ4 435 aa16.1■□□□□ 0.17
CLN3-241ENST00000635861 CREB3L2Q70SY1 520 aa16.1■□□□□ 0.17
CLN3-241ENST00000635861 ZNF525Q8N782 197 aa16.1■□□□□ 0.17
CLN3-241ENST00000635861 ANKK1Q8NFD2 765 aa16.1■□□□□ 0.17
CLN3-241ENST00000635861 MFSD8Q8NHS3 518 aa16.1■□□□□ 0.17
CLN3-241ENST00000635861 MAGEE2Q8TD90 523 aaPredicted RBP16.1■□□□□ 0.17
CLN3-241ENST00000635861 MGARPQ8TDB4 240 aa16.1■□□□□ 0.17
CLN3-241ENST00000635861 C10orf105Q8TEF2 133 aa16.1■□□□□ 0.17
CLN3-241ENST00000635861 AURKBQ96GD4 344 aaPredicted RBP16.1■□□□□ 0.17
CLN3-241ENST00000635861 LINC00470Q9BZP3 86 aa16.1■□□□□ 0.17
CLN3-241ENST00000635861 LPAR3Q9UBY5 353 aa16.1■□□□□ 0.17
CLN3-241ENST00000635861 FKBP7Q9Y680 259 aa16.1■□□□□ 0.17
CLN3-241ENST00000635861 ARPC4-TTLL3A0A0A6YYG9 625 aa16.09■□□□□ 0.17
CLN3-241ENST00000635861 TMEM229AB2RXF0 380 aa16.09■□□□□ 0.17
CLN3-241ENST00000635861 NDUFS8O00217 210 aa16.09■□□□□ 0.17
CLN3-241ENST00000635861 PDE5AO76074 875 aa16.09■□□□□ 0.17
CLN3-241ENST00000635861 F12P00748 615 aaPredicted RBP16.09■□□□□ 0.17
CLN3-241ENST00000635861 FAM157CP0CG43 387 aa16.09■□□□□ 0.17
CLN3-241ENST00000635861 KITP10721 976 aa16.09■□□□□ 0.17
CLN3-241ENST00000635861 NCF2P19878 526 aaPredicted RBP16.09■□□□□ 0.17
CLN3-241ENST00000635861 LSP1P33241 339 aa16.09■□□□□ 0.17
CLN3-241ENST00000635861 FADDQ13158 208 aa16.09■□□□□ 0.17
CLN3-241ENST00000635861 SWI5Q1ZZU3 235 aa16.09■□□□□ 0.17
CLN3-241ENST00000635861 TBRG1Q3YBR2 411 aa16.09■□□□□ 0.17
CLN3-241ENST00000635861 C5orf46Q6UWT4 87 aa16.09■□□□□ 0.17
CLN3-241ENST00000635861 FAM169BQ8N8A8 192 aa16.09■□□□□ 0.17
CLN3-241ENST00000635861 OR1K1Q8NGR3 316 aa16.09■□□□□ 0.17
CLN3-241ENST00000635861 C3orf49Q96BT1 292 aa16.09■□□□□ 0.17
CLN3-241ENST00000635861 TMEM19Q96HH6 336 aa16.09■□□□□ 0.17
CLN3-241ENST00000635861 KCNS3Q9BQ31 491 aa16.09■□□□□ 0.17
CLN3-241ENST00000635861 KATNB1Q9BVA0 655 aa16.09■□□□□ 0.17
CLN3-241ENST00000635861 C12orf10Q9HB07 376 aa16.09■□□□□ 0.17
CLN3-241ENST00000635861 BCL2L10Q9HD36 194 aa16.09■□□□□ 0.17
CLN3-241ENST00000635861 MYOZ1Q9NP98 299 aaPredicted RBP16.09■□□□□ 0.17
CLN3-241ENST00000635861 SLC6A13Q9NSD5 602 aa16.09■□□□□ 0.17
CLN3-241ENST00000635861 INTS9Q9NV88 658 aaKnown RBP16.09■□□□□ 0.17
CLN3-241ENST00000635861 ADPRHL2Q9NX46 363 aa16.09■□□□□ 0.17
CLN3-241ENST00000635861 ATP6V1G2-DDX39BF2Z307 99 aa16.08■□□□□ 0.16
CLN3-241ENST00000635861 GPRIN2O60269 458 aa16.08■□□□□ 0.16
CLN3-241ENST00000635861 FZD7O75084 574 aa16.08■□□□□ 0.16
CLN3-241ENST00000635861 AHSA1O95433 338 aa16.08■□□□□ 0.16
CLN3-241ENST00000635861 SLC38A2Q96QD8 506 aa16.08■□□□□ 0.16
CLN3-241ENST00000635861 MANSC1Q9H8J5 431 aa16.08■□□□□ 0.16
CLN3-241ENST00000635861 CRNNQ9UBG3 495 aaPredicted RBP16.08■□□□□ 0.16
CLN3-241ENST00000635861 RCE1Q9Y256 329 aa16.08■□□□□ 0.16
CLN3-241ENST00000635861 KLF11O14901 512 aa16.07■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 45.2 ms