RNA–Protein interactions for RNA: ENST00000631023.2

CLN3-240, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,586 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-240ENST00000631023 MAST4O15021 2626 aa18.36■□□□□ 0.53
CLN3-240ENST00000631023 SPG11Q96JI7 2443 aa18.35■□□□□ 0.53
CLN3-240ENST00000631023 SERPINA1P01009 418 aa18.35■□□□□ 0.53
CLN3-240ENST00000631023 HSD17B1P14061 328 aa18.35■□□□□ 0.53
CLN3-240ENST00000631023 PPP3CBP16298 524 aa18.35■□□□□ 0.53
CLN3-240ENST00000631023 PSMB1P20618 241 aaKnown RBP18.35■□□□□ 0.53
CLN3-240ENST00000631023 SPATS1Q496A3 300 aa18.35■□□□□ 0.53
CLN3-240ENST00000631023 GLYATQ6IB77 296 aa18.35■□□□□ 0.53
CLN3-240ENST00000631023 FKBP9P1Q75LS8 142 aa18.35■□□□□ 0.53
CLN3-240ENST00000631023 DEFB107AQ8IZN7 70 aa18.35■□□□□ 0.53
CLN3-240ENST00000631023 GABRG1Q8N1C3 465 aa18.35■□□□□ 0.53
CLN3-240ENST00000631023 C10orf53Q8N6V4 93 aa18.35■□□□□ 0.53
CLN3-240ENST00000631023 GEMIN6Q8WXD5 167 aaKnown RBP18.35■□□□□ 0.53
CLN3-240ENST00000631023 WFIKKN1Q96NZ8 548 aa18.35■□□□□ 0.53
CLN3-240ENST00000631023 EGFL7Q9UHF1 273 aa18.35■□□□□ 0.53
CLN3-240ENST00000631023 TESMINQ9Y4I5 508 aa18.35■□□□□ 0.53
CLN3-240ENST00000631023 CORINQ9Y5Q5 1042 aa18.35■□□□□ 0.53
CLN3-240ENST00000631023 AKAP6Q13023 2319 aa18.35■□□□□ 0.53
CLN3-240ENST00000631023 TACC2O95359 2948 aa18.35■□□□□ 0.53
CLN3-240ENST00000631023 A6NNC1 897 aa18.34■□□□□ 0.53
CLN3-240ENST00000631023 B2RBV5 119 aa18.34■□□□□ 0.53
CLN3-240ENST00000631023 FZD7O75084 574 aa18.34■□□□□ 0.53
CLN3-240ENST00000631023 OR5F1O95221 314 aa18.34■□□□□ 0.53
CLN3-240ENST00000631023 GOSR1O95249 250 aa18.34■□□□□ 0.53
CLN3-240ENST00000631023 IFNW1P05000 195 aa18.34■□□□□ 0.53
CLN3-240ENST00000631023 THRBP10828 461 aa18.34■□□□□ 0.53
CLN3-240ENST00000631023 NCK1P16333 377 aa18.34■□□□□ 0.53
CLN3-240ENST00000631023 CALB2P22676 271 aa18.34■□□□□ 0.53
CLN3-240ENST00000631023 CASP12Q6UXS9 341 aa18.34■□□□□ 0.53
CLN3-240ENST00000631023 H1FNTQ75WM6 255 aaPredicted RBP18.34■□□□□ 0.53
CLN3-240ENST00000631023 UBE2J2Q8N2K1 259 aa18.34■□□□□ 0.53
CLN3-240ENST00000631023 ASPNQ9BXN1 380 aa18.34■□□□□ 0.53
CLN3-240ENST00000631023 SLC19A3Q9BZV2 496 aa18.34■□□□□ 0.53
CLN3-240ENST00000631023 OR10A4Q9H209 315 aa18.34■□□□□ 0.53
CLN3-240ENST00000631023 PRSS50Q9UI38 385 aa18.34■□□□□ 0.53
CLN3-240ENST00000631023 RIMS3Q9UJD0 308 aa18.34■□□□□ 0.53
CLN3-240ENST00000631023 ADAP00813 363 aa18.34■□□□□ 0.53
CLN3-240ENST00000631023 THY1P04216 161 aa18.34■□□□□ 0.53
CLN3-240ENST00000631023 TCN1P20061 433 aaPredicted RBP18.34■□□□□ 0.53
CLN3-240ENST00000631023 GRPRP30550 384 aa18.34■□□□□ 0.53
CLN3-240ENST00000631023 P2RY4P51582 365 aa18.34■□□□□ 0.53
CLN3-240ENST00000631023 ITGADQ13349 1161 aa18.34■□□□□ 0.53
CLN3-240ENST00000631023 PIN1Q13526 163 aaPredicted RBP18.34■□□□□ 0.53
CLN3-240ENST00000631023 IFI44LQ53G44 452 aa18.34■□□□□ 0.53
CLN3-240ENST00000631023 SFRP5Q5T4F7 317 aa18.34■□□□□ 0.53
CLN3-240ENST00000631023 FBXW9Q5XUX1 488 aa18.34■□□□□ 0.53
CLN3-240ENST00000631023 VTCN1Q7Z7D3 282 aa18.34■□□□□ 0.53
CLN3-240ENST00000631023 TSPYL5Q86VY4 417 aaPredicted RBP18.34■□□□□ 0.53
CLN3-240ENST00000631023 TMEM200AQ86VY9 491 aa18.34■□□□□ 0.53
CLN3-240ENST00000631023 CXorf67Q86X51 503 aaPredicted RBP18.34■□□□□ 0.53
CLN3-240ENST00000631023 STEAP2Q8NFT2 490 aa18.34■□□□□ 0.53
CLN3-240ENST00000631023 TMEM45BQ96B21 275 aa18.34■□□□□ 0.53
CLN3-240ENST00000631023 USB1Q9BQ65 265 aaKnown RBP18.34■□□□□ 0.53
CLN3-240ENST00000631023 M0R082 166 aa18.33■□□□□ 0.52
CLN3-240ENST00000631023 CTAG2O75638 210 aa18.33■□□□□ 0.52
CLN3-240ENST00000631023 LYPD3O95274 346 aa18.33■□□□□ 0.52
CLN3-240ENST00000631023 MT-ATP6P00846 226 aa18.33■□□□□ 0.52
CLN3-240ENST00000631023 NQO1P15559 274 aaKnown RBP18.33■□□□□ 0.52
CLN3-240ENST00000631023 ZNF43P17038 809 aa18.33■□□□□ 0.52
CLN3-240ENST00000631023 IL32P24001 234 aa18.33■□□□□ 0.52
CLN3-240ENST00000631023 CCKARP32238 428 aa18.33■□□□□ 0.52
CLN3-240ENST00000631023 POU4F3Q15319 338 aa18.33■□□□□ 0.52
CLN3-240ENST00000631023 FBXW10Q5XX13 1052 aa18.33■□□□□ 0.52
CLN3-240ENST00000631023 ANKRD34AQ69YU3 496 aa18.33■□□□□ 0.52
CLN3-240ENST00000631023 WDR88Q6ZMY6 472 aa18.33■□□□□ 0.52
CLN3-240ENST00000631023 SCAIQ8N9R8 606 aa18.33■□□□□ 0.52
CLN3-240ENST00000631023 ADPRHL1Q8NDY3 354 aa18.33■□□□□ 0.52
CLN3-240ENST00000631023 ZNF417Q8TAU3 575 aa18.33■□□□□ 0.52
CLN3-240ENST00000631023 KISS1RQ969F8 398 aaPredicted RBP18.33■□□□□ 0.52
CLN3-240ENST00000631023 HSH2DQ96JZ2 352 aa18.33■□□□□ 0.52
CLN3-240ENST00000631023 OXGR1Q96P68 337 aa18.33■□□□□ 0.52
CLN3-240ENST00000631023 ZNF587Q96SQ5 575 aaPredicted RBP18.33■□□□□ 0.52
CLN3-240ENST00000631023 GORASP2Q9H8Y8 452 aa18.33■□□□□ 0.52
CLN3-240ENST00000631023 CD300AQ9UGN4 299 aa18.33■□□□□ 0.52
CLN3-240ENST00000631023 MAGEL2Q9UJ55 1249 aa18.33■□□□□ 0.52
CLN3-240ENST00000631023 SAMD4AQ9UPU9 718 aaKnown RBP18.33■□□□□ 0.52
CLN3-240ENST00000631023 BGLAPP02818 100 aa18.32■□□□□ 0.52
CLN3-240ENST00000631023 PTNP21246 168 aa18.32■□□□□ 0.52
CLN3-240ENST00000631023 CBLP22681 906 aa18.32■□□□□ 0.52
CLN3-240ENST00000631023 NTF4P34130 210 aa18.32■□□□□ 0.52
CLN3-240ENST00000631023 RBM34P42696 430 aaKnown RBP18.32■□□□□ 0.52
CLN3-240ENST00000631023 ST3GAL3Q11203 375 aa18.32■□□□□ 0.52
CLN3-240ENST00000631023 CREB3L2Q70SY1 520 aa18.32■□□□□ 0.52
CLN3-240ENST00000631023 AAED1Q7RTV5 226 aa18.32■□□□□ 0.52
CLN3-240ENST00000631023 ZC3HAV1Q7Z2W4 902 aaKnown RBP18.32■□□□□ 0.52
CLN3-240ENST00000631023 FAM156AQ8NDB6 213 aa18.32■□□□□ 0.52
CLN3-240ENST00000631023 PRRC1Q96M27 445 aa18.32■□□□□ 0.52
CLN3-240ENST00000631023 HS6ST2Q96MM7 605 aa18.32■□□□□ 0.52
CLN3-240ENST00000631023 PRSS27Q9BQR3 290 aa18.32■□□□□ 0.52
CLN3-240ENST00000631023 ZNF426Q9BUY5 554 aa18.32■□□□□ 0.52
CLN3-240ENST00000631023 ACTR6Q9GZN1 396 aa18.32■□□□□ 0.52
CLN3-240ENST00000631023 DCAF13Q9NV06 445 aaKnown RBP18.32■□□□□ 0.52
CLN3-240ENST00000631023 ASB6Q9NWX5 421 aa18.32■□□□□ 0.52
CLN3-240ENST00000631023 UPB1Q9UBR1 384 aa18.32■□□□□ 0.52
CLN3-240ENST00000631023 ANKRD17O75179 2603 aaKnown RBP18.32■□□□□ 0.52
CLN3-240ENST00000631023 FBN2P35556 2912 aa18.31■□□□□ 0.52
CLN3-240ENST00000631023 LOC102725191A0A1B0GVB3 256 aa18.31■□□□□ 0.52
CLN3-240ENST00000631023 FAM221AA4D161 298 aa18.31■□□□□ 0.52
CLN3-240ENST00000631023 EDNRAP25101 427 aa18.31■□□□□ 0.52
CLN3-240ENST00000631023 IL1RL1Q01638 556 aa18.31■□□□□ 0.52
Retrieved 100 of 20,778 RNA–protein pairs in 34.5 ms