RNA–Protein interactions for RNA: ENST00000619445.1

UPF3B-204, Transcript of UPF3B, regulator of nonsense mediated mRNA decay, humanhuman

TSL 5 BASIC

Gene UPF3B, Length 1,385 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3B-204ENST00000619445 MIER2Q8N344 545 aa10.43□□□□□ -0.74
UPF3B-204ENST00000619445 FAM169BQ8N8A8 192 aa10.43□□□□□ -0.74
UPF3B-204ENST00000619445 MAPK1IP1LQ8NDC0 245 aa10.43□□□□□ -0.74
UPF3B-204ENST00000619445 MFSD8Q8NHS3 518 aa10.43□□□□□ -0.74
UPF3B-204ENST00000619445 BBS10Q8TAM1 723 aa10.43□□□□□ -0.74
UPF3B-204ENST00000619445 MAGEE2Q8TD90 523 aaPredicted RBP10.43□□□□□ -0.74
UPF3B-204ENST00000619445 DNAJA3Q96EY1 480 aa10.43□□□□□ -0.74
UPF3B-204ENST00000619445 MDFIQ99750 246 aa10.43□□□□□ -0.74
UPF3B-204ENST00000619445 KATNB1Q9BVA0 655 aa10.43□□□□□ -0.74
UPF3B-204ENST00000619445 BCL2L10Q9HD36 194 aa10.43□□□□□ -0.74
UPF3B-204ENST00000619445 RLIMQ9NVW2 624 aa10.43□□□□□ -0.74
UPF3B-204ENST00000619445 ADPRHL2Q9NX46 363 aa10.43□□□□□ -0.74
UPF3B-204ENST00000619445 ADAM21Q9UKJ8 722 aa10.43□□□□□ -0.74
UPF3B-204ENST00000619445 RCE1Q9Y256 329 aa10.43□□□□□ -0.74
UPF3B-204ENST00000619445 YLPM1P49750 1951 aaKnown RBP10.43□□□□□ -0.74
UPF3B-204ENST00000619445 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP10.42□□□□□ -0.745e-7■■■■□ 24.2
UPF3B-204ENST00000619445 IGHV4-30-2A0A087WSY4 118 aa10.42□□□□□ -0.74
UPF3B-204ENST00000619445 ARPC4-TTLL3A0A0A6YYG9 625 aa10.42□□□□□ -0.74
UPF3B-204ENST00000619445 A0A1W2PR80 420 aa10.42□□□□□ -0.74
UPF3B-204ENST00000619445 C5orf58C9J3I9 102 aa10.42□□□□□ -0.74
UPF3B-204ENST00000619445 FRS3O43559 492 aa10.42□□□□□ -0.74
UPF3B-204ENST00000619445 ZNF500O60304 480 aaPredicted RBP10.42□□□□□ -0.74
UPF3B-204ENST00000619445 ERLIN1O75477 346 aa10.42□□□□□ -0.74
UPF3B-204ENST00000619445 F12P00748 615 aaPredicted RBP10.42□□□□□ -0.74
UPF3B-204ENST00000619445 KITP10721 976 aa10.42□□□□□ -0.74
UPF3B-204ENST00000619445 ETFAP13804 333 aa10.42□□□□□ -0.74
UPF3B-204ENST00000619445 ETS2P15036 469 aa10.42□□□□□ -0.74
UPF3B-204ENST00000619445 PPIBP23284 216 aaKnown RBP10.42□□□□□ -0.74
UPF3B-204ENST00000619445 POLR2JP52435 117 aaKnown RBP10.42□□□□□ -0.74
UPF3B-204ENST00000619445 MVDP53602 400 aa10.42□□□□□ -0.74
UPF3B-204ENST00000619445 WDR4P57081 412 aaKnown RBP10.42□□□□□ -0.74
UPF3B-204ENST00000619445 STX1BP61266 288 aa10.42□□□□□ -0.74
UPF3B-204ENST00000619445 SPOCK1Q08629 439 aa10.42□□□□□ -0.74
UPF3B-204ENST00000619445 MFSD13AQ14CX5 517 aa10.42□□□□□ -0.74
UPF3B-204ENST00000619445 ZNF311Q5JNZ3 666 aa10.42□□□□□ -0.74
UPF3B-204ENST00000619445 C9orf135Q5VTT2 229 aa10.42□□□□□ -0.74
UPF3B-204ENST00000619445 CREB3L2Q70SY1 520 aa10.42□□□□□ -0.74
UPF3B-204ENST00000619445 NET1Q7Z628 596 aaPredicted RBP10.42□□□□□ -0.74
UPF3B-204ENST00000619445 VRK2Q86Y07 508 aa10.42□□□□□ -0.74
UPF3B-204ENST00000619445 ZIC4Q8N9L1 334 aa10.42□□□□□ -0.74
UPF3B-204ENST00000619445 ZNF540Q8NDQ6 660 aa10.42□□□□□ -0.74
UPF3B-204ENST00000619445 OR4F15Q8NGB8 312 aa10.42□□□□□ -0.74
UPF3B-204ENST00000619445 AURKBQ96GD4 344 aaPredicted RBP10.42□□□□□ -0.74
UPF3B-204ENST00000619445 TMEM19Q96HH6 336 aa10.42□□□□□ -0.74
UPF3B-204ENST00000619445 SPATA5L1Q9BVQ7 753 aa10.42□□□□□ -0.74
UPF3B-204ENST00000619445 LINC00470Q9BZP3 86 aa10.42□□□□□ -0.74
UPF3B-204ENST00000619445 EVA1AQ9H8M9 152 aa10.42□□□□□ -0.74
UPF3B-204ENST00000619445 A4GALTQ9NPC4 353 aa10.42□□□□□ -0.74
UPF3B-204ENST00000619445 RPS6KB2Q9UBS0 482 aa10.42□□□□□ -0.74
UPF3B-204ENST00000619445 TMEM229AB2RXF0 380 aa10.41□□□□□ -0.74
UPF3B-204ENST00000619445 B9A039 149 aa10.41□□□□□ -0.74
UPF3B-204ENST00000619445 NPIPB7O75200 414 aa10.41□□□□□ -0.74
UPF3B-204ENST00000619445 TGDSO95455 350 aa10.41□□□□□ -0.74
UPF3B-204ENST00000619445 ERCC1P07992 297 aaPredicted RBP10.41□□□□□ -0.74
UPF3B-204ENST00000619445 GKN3PP0CG01 181 aa10.41□□□□□ -0.74
UPF3B-204ENST00000619445 FAM157CP0CG43 387 aa10.41□□□□□ -0.74
UPF3B-204ENST00000619445 PNMTP11086 282 aa10.41□□□□□ -0.74
UPF3B-204ENST00000619445 BMP2P12643 396 aa10.41□□□□□ -0.74
UPF3B-204ENST00000619445 ZNF43P17038 809 aa10.41□□□□□ -0.74
UPF3B-204ENST00000619445 MRPL19P49406 292 aaKnown RBP10.41□□□□□ -0.74
UPF3B-204ENST00000619445 GZMKP49863 264 aa10.41□□□□□ -0.74
UPF3B-204ENST00000619445 PDLIM4P50479 330 aa10.41□□□□□ -0.74
UPF3B-204ENST00000619445 FOXG1P55316 489 aaPredicted RBP10.41□□□□□ -0.74
UPF3B-204ENST00000619445 TBRG1Q3YBR2 411 aa10.41□□□□□ -0.74
UPF3B-204ENST00000619445 C6orf52Q5T4I8 152 aa10.41□□□□□ -0.74
UPF3B-204ENST00000619445 CYB5R2Q6BCY4 276 aa10.41□□□□□ -0.74
UPF3B-204ENST00000619445 ANKRD16Q6P6B7 361 aa10.41□□□□□ -0.74
UPF3B-204ENST00000619445 B3GLCTQ6Y288 498 aa10.41□□□□□ -0.74
UPF3B-204ENST00000619445 KRT73Q86Y46 540 aa10.41□□□□□ -0.74
UPF3B-204ENST00000619445 GOLGA6L1Q8N7Z2 621 aa10.41□□□□□ -0.74
UPF3B-204ENST00000619445 BHLHE22Q8NFJ8 381 aaPredicted RBP10.41□□□□□ -0.74
UPF3B-204ENST00000619445 IL17RDQ8NFM7 739 aa10.41□□□□□ -0.74
UPF3B-204ENST00000619445 OR1K1Q8NGR3 316 aa10.41□□□□□ -0.74
UPF3B-204ENST00000619445 C10orf105Q8TEF2 133 aa10.41□□□□□ -0.74
UPF3B-204ENST00000619445 DNAJA4Q8WW22 397 aaPredicted RBP10.41□□□□□ -0.74
UPF3B-204ENST00000619445 TMEM158Q8WZ71 300 aa10.41□□□□□ -0.74
UPF3B-204ENST00000619445 C3orf49Q96BT1 292 aa10.41□□□□□ -0.74
UPF3B-204ENST00000619445 ZNF385AQ96PM9 386 aaKnown RBP10.41□□□□□ -0.74
UPF3B-204ENST00000619445 SLC38A2Q96QD8 506 aa10.41□□□□□ -0.74
UPF3B-204ENST00000619445 C1QTNF6Q9BXI9 259 aa10.41□□□□□ -0.74
UPF3B-204ENST00000619445 CORO2BQ9UQ03 480 aa10.41□□□□□ -0.74
UPF3B-204ENST00000619445 DNHD1Q96M86 4753 aa10.41□□□□□ -0.74
UPF3B-204ENST00000619445 A0A096LNT2 108 aa10.4□□□□□ -0.74
UPF3B-204ENST00000619445 ATP6V1G2-DDX39BF2Z307 99 aa10.4□□□□□ -0.74
UPF3B-204ENST00000619445 RPL36A-HNRNPH2H7BZ11 118 aa10.4□□□□□ -0.74
UPF3B-204ENST00000619445 CLIC1O00299 241 aa10.4□□□□□ -0.74
UPF3B-204ENST00000619445 AIM2O14862 343 aa10.4□□□□□ -0.74
UPF3B-204ENST00000619445 SLC43A1O75387 559 aa10.4□□□□□ -0.74
UPF3B-204ENST00000619445 CDH2P19022 906 aaPredicted RBP10.4□□□□□ -0.74
UPF3B-204ENST00000619445 USF1P22415 310 aaPredicted RBP10.4□□□□□ -0.74
UPF3B-204ENST00000619445 PRKAR1BP31321 381 aa10.4□□□□□ -0.74
UPF3B-204ENST00000619445 THBS2P35442 1172 aa10.4□□□□□ -0.74
UPF3B-204ENST00000619445 SERPINF1P36955 418 aa10.4□□□□□ -0.74
UPF3B-204ENST00000619445 P2RY4P51582 365 aa10.4□□□□□ -0.74
UPF3B-204ENST00000619445 RGNQ15493 299 aa10.4□□□□□ -0.74
UPF3B-204ENST00000619445 MAPK11Q15759 364 aa10.4□□□□□ -0.74
UPF3B-204ENST00000619445 SWI5Q1ZZU3 235 aa10.4□□□□□ -0.74
UPF3B-204ENST00000619445 FAM69AQ5T7M9 428 aa10.4□□□□□ -0.74
UPF3B-204ENST00000619445 NIPAL3Q6P499 406 aa10.4□□□□□ -0.74
UPF3B-204ENST00000619445 C6orf89Q6UWU4 347 aa10.4□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 31.4 ms